Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 C 1.52996 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47201 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47560 * 180.02562 * 7 6 5 9 9 C 1.36939 * 120.00465 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99572 * 359.97438 * 9 8 7 11 11 C 1.38805 * 120.00315 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00178 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00283 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47382 * 89.99190 * 13 11 9 15 15 H 1.48498 * 109.47432 * 209.99814 * 13 11 9 16 16 H 1.48508 * 109.46871 * 329.99565 * 13 11 9 17 17 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 18 18 C 1.34768 * 120.00056 * 275.00296 * 17 2 1 19 19 O 1.21278 * 120.00079 * 359.97438 * 18 17 2 20 20 C 1.50705 * 120.00177 * 179.97438 * 18 17 2 21 21 H 1.09000 * 109.46519 * 60.00292 * 20 18 17 22 22 C 1.52998 * 109.47239 * 300.00289 * 20 18 17 23 23 C 1.52997 * 109.47273 * 179.97438 * 20 18 17 24 24 C 1.53004 * 117.50142 * 248.62315 * 23 20 18 25 25 C 1.53005 * 60.00058 * 252.51232 * 24 23 20 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 30 30 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 31 31 H 1.08994 * 109.47518 * 299.99758 * 5 4 2 32 32 H 1.09001 * 109.47018 * 59.99856 * 5 4 2 33 33 H 1.08998 * 109.47611 * 299.99769 * 6 5 4 34 34 H 1.09001 * 109.47165 * 60.00270 * 6 5 4 35 35 H 1.09007 * 109.47221 * 300.00499 * 7 6 5 36 36 H 1.08997 * 109.47219 * 59.99756 * 7 6 5 37 37 H 0.97001 * 119.99753 * 0.02562 * 8 7 6 38 38 H 0.97000 * 120.00258 * 180.02562 * 12 11 9 39 39 H 0.97001 * 119.99547 * 95.00125 * 17 2 1 40 40 H 1.08998 * 109.46853 * 299.99540 * 22 20 18 41 41 H 1.08997 * 109.47149 * 59.99263 * 22 20 18 42 42 H 1.09000 * 109.46684 * 179.97438 * 22 20 18 43 43 H 1.08993 * 115.54917 * 34.33601 * 23 20 18 44 44 H 1.08996 * 117.49881 * 0.02562 * 24 23 20 45 45 H 1.09001 * 117.49900 * 145.02328 * 24 23 20 46 46 H 1.08999 * 117.49624 * 252.51201 * 25 24 23 47 47 H 1.08994 * 117.51479 * 107.47768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3348 -2.5627 7 6 5.5997 -1.2274 -2.6269 8 7 6.0881 -1.9179 -3.8231 9 6 7.4302 -1.9552 -4.0923 10 1 8.1287 -1.4751 -3.4229 11 6 7.8928 -2.6089 -5.2260 12 7 7.0416 -3.1936 -6.0421 13 14 9.7237 -2.6604 -5.5928 14 1 10.3222 -3.8623 -4.9584 15 1 9.9328 -2.7200 -7.0618 16 1 10.3718 -1.4395 -5.0498 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0184 2.3570 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5877 21 1 3.6481 -1.1213 3.3984 22 6 1.7046 -1.8825 3.9313 23 6 2.7011 0.2543 4.7587 24 6 4.0812 0.6529 5.2856 25 6 3.1883 -0.2788 6.1076 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.7517 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1371 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 3.7865 -2.3851 -2.5188 34 1 3.6402 -0.8756 -3.4506 35 1 5.8885 -0.1772 -2.6707 36 1 6.0340 -1.6869 -1.7390 37 1 5.4607 -2.3487 -4.4245 38 1 7.3649 -3.6508 -6.8341 39 1 2.2491 -1.6318 1.1525 40 1 0.7055 -1.4901 4.1205 41 1 1.6678 -2.5829 3.0969 42 1 2.0679 -2.3967 4.8211 43 1 1.9191 1.0134 4.7703 44 1 4.9519 0.2150 4.7977 45 1 4.2072 1.6746 5.6439 46 1 2.7270 0.1300 7.0066 47 1 3.4713 -1.3300 6.1607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170020099.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -56.814695 kcal Electronic energy + Delta-G solvation = -21914.855816 eV Core-core repulsion = 18710.558031 eV Total energy + Delta-G solvation = -3204.297785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14557 -38.63032 -37.74734 -36.76336 -34.80933 -33.66090 -32.51707 -31.16176 -28.82215 -26.12279 -25.85779 -23.90183 -23.14474 -22.72334 -22.03056 -21.54576 -20.56127 -19.13264 -18.32138 -17.43841 -16.69391 -16.37132 -16.31148 -15.81223 -15.47126 -15.35368 -15.21027 -14.67346 -14.52167 -14.29123 -14.11315 -13.76322 -13.25876 -13.13923 -13.02546 -12.88889 -12.87305 -12.86530 -12.46243 -12.29977 -12.26124 -12.16390 -11.90295 -11.85970 -11.80174 -11.49107 -11.39176 -11.27363 -10.94626 -10.92617 -10.64024 -10.02805 -9.02441 -7.97391 -5.26809 1.46272 1.48417 1.57067 1.69712 2.23107 2.54785 2.93842 3.35948 3.58759 3.66901 3.74695 4.00555 4.04017 4.05444 4.13598 4.15323 4.34959 4.35547 4.42150 4.49817 4.53221 4.60830 4.64480 4.78103 4.79219 4.87150 4.88190 4.93384 4.98407 4.99103 5.02045 5.05709 5.14532 5.25880 5.26308 5.30411 5.32155 5.37098 5.45224 5.45605 5.52441 5.63474 6.25685 6.62169 7.31257 7.32114 8.07813 8.31306 9.26320 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002702 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.657748 B =10360.688749 C =11402.517437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.270 1.270 17 N -0.713 5.713 18 C 0.516 3.484 19 O -0.585 6.585 20 C -0.077 4.077 21 H 0.110 0.890 22 C -0.136 4.136 23 C -0.150 4.150 24 C -0.189 4.189 25 C -0.159 4.159 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.011 0.989 36 H 0.019 0.981 37 H 0.374 0.626 38 H 0.253 0.747 39 H 0.412 0.588 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.424 2.586 22.695 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.195 1.195 17 N -0.365 5.365 18 C 0.304 3.696 19 O -0.465 6.465 20 C -0.098 4.098 21 H 0.128 0.872 22 C -0.194 4.194 23 C -0.169 4.169 24 C -0.226 4.226 25 C -0.196 4.196 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.206 0.794 38 H 0.061 0.939 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.457 3.471 22.755 27.182 hybrid contribution 0.936 -0.297 -0.828 1.285 sum -13.521 3.175 21.927 25.955 Atomic orbital electron populations 1.22101 0.94457 1.02835 1.02015 1.20934 0.94408 0.96594 0.84255 0.91843 1.21836 0.94685 1.01996 0.96852 1.21417 0.95845 1.00032 0.96966 1.21600 0.93727 1.00981 0.98702 1.20853 0.94258 0.94199 0.88487 1.42635 1.04531 1.65419 1.26621 1.19656 0.85318 1.27810 1.05432 0.90888 1.25616 1.02320 1.01191 0.97753 1.69816 1.34727 1.41938 1.15574 0.85106 0.79748 0.78061 0.76646 1.21083 1.21939 1.19539 1.46076 1.66695 1.14622 1.09101 1.21033 0.76440 0.86750 0.85402 1.90661 1.51997 1.18099 1.85728 1.20898 1.02191 0.96143 0.90579 0.87231 1.21749 0.98331 0.95783 1.03522 1.21971 0.98793 1.01460 0.94656 1.23092 0.93988 1.00740 1.04783 1.23056 1.02544 1.00217 0.93759 0.94013 0.91016 0.90745 0.89666 0.89721 0.92851 0.91499 0.91744 0.92496 0.97065 0.96345 0.79407 0.93863 0.75075 0.92818 0.90643 0.89812 0.89119 0.88421 0.89200 0.88056 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.48 71.98 0.68 -1.89 16 2 C 0.14 2.66 2.57 44.99 0.12 2.77 16 3 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 4 C -0.12 -2.03 4.75 30.60 0.15 -1.89 16 5 C -0.10 -2.42 5.10 30.59 0.16 -2.26 16 6 C -0.11 -3.43 5.33 30.59 0.16 -3.27 16 7 C 0.15 6.05 6.26 86.38 0.54 6.59 16 8 N -0.75 -39.34 5.60 -343.45 -1.92 -41.27 16 9 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 13 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 N -0.71 -12.02 4.42 -442.54 -1.96 -13.98 16 18 C 0.52 10.93 7.12 87.66 0.62 11.56 16 19 O -0.58 -17.63 15.31 -3.02 -0.05 -17.68 16 20 C -0.08 -1.16 2.88 -11.54 -0.03 -1.19 16 21 H 0.11 1.39 7.90 -2.39 -0.02 1.37 16 22 C -0.14 -1.38 8.93 71.98 0.64 -0.74 16 23 C -0.15 -2.58 4.76 -10.79 -0.05 -2.63 16 24 C -0.19 -2.99 10.18 30.60 0.31 -2.68 16 25 C -0.16 -1.94 9.74 30.60 0.30 -1.64 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.46 7.75 -2.39 -0.02 1.45 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.37 20.62 7.67 -92.71 -0.71 19.91 16 38 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 39 H 0.41 4.87 8.02 -92.71 -0.74 4.12 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.55 7.56 -2.39 -0.02 0.54 16 42 H 0.08 0.62 7.29 -2.39 -0.02 0.60 16 43 H 0.09 2.00 7.47 -2.39 -0.02 1.98 16 44 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.11 1.00 7.61 -2.39 -0.02 0.98 16 Total: -1.00 -71.95 380.73 2.76 -69.19 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.53 Total: 29.75 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 4.90 Total: -14.84 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.60 Total: -115.02 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.05 Total: -17.68 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -71.95 2.76 -69.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170020099.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.379 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds