Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47120 * 180.02562 * 7 6 5 9 9 C 1.36932 * 120.00302 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99762 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00497 * 179.97438 * 9 8 7 12 12 N 1.31622 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00402 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46675 * 89.99720 * 13 11 9 15 15 H 1.48494 * 109.47198 * 209.99579 * 13 11 9 16 16 H 1.48497 * 109.47038 * 330.00110 * 13 11 9 17 17 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 2 1 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 2 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 2 21 21 H 1.08998 * 115.54754 * 325.67275 * 20 18 17 22 22 C 1.52996 * 117.49800 * 111.37914 * 20 18 17 23 23 C 1.52992 * 117.50304 * 180.02562 * 20 18 17 24 24 C 1.53001 * 117.49613 * 359.97438 * 23 20 18 25 25 C 1.52997 * 117.49991 * 145.02001 * 23 20 18 26 26 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 28 28 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 29 29 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 30 30 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 31 31 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 32 32 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 33 33 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 34 34 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 35 35 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 36 36 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 37 37 H 0.97005 * 120.00133 * 359.97438 * 8 7 6 38 38 H 0.96996 * 120.00098 * 179.97438 * 12 11 9 39 39 H 0.97001 * 120.00384 * 265.00562 * 17 2 1 40 40 H 1.09004 * 117.49857 * 214.98141 * 22 20 18 41 41 H 1.08998 * 117.49975 * 0.02562 * 22 20 18 42 42 H 1.09004 * 109.47293 * 60.00832 * 24 23 20 43 43 H 1.09003 * 109.47405 * 179.97438 * 24 23 20 44 44 H 1.08994 * 109.47468 * 299.99811 * 24 23 20 45 45 H 1.08997 * 109.46981 * 60.00185 * 25 23 20 46 46 H 1.09006 * 109.47286 * 179.97438 * 25 23 20 47 47 H 1.09001 * 109.47367 * 299.99883 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0880 -1.9162 3.8240 9 6 7.4299 -1.9518 4.0943 10 1 8.1283 -1.4710 3.4253 11 6 7.8926 -2.6057 5.2279 12 7 7.0414 -3.1912 6.0434 13 14 9.7233 -2.6548 5.5961 14 1 10.0929 -1.4799 6.4259 15 1 10.0467 -3.9027 6.3331 16 1 10.4855 -2.6204 4.3222 17 7 2.0184 -0.6906 -1.1962 18 6 2.1417 -0.0196 -2.3585 19 8 1.8533 1.1572 -2.4129 20 6 2.6382 -0.7314 -3.5905 21 1 3.3831 -1.5078 -3.4167 22 6 1.6407 -0.9511 -4.7296 23 6 2.7568 0.0853 -4.8788 24 6 2.3618 1.5622 -4.8178 25 6 3.9113 -0.2511 -5.8247 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4259 32 1 3.8532 0.4369 1.3573 33 1 3.6402 -0.8742 3.4508 34 1 3.7865 -2.3844 2.5200 35 1 6.0345 -1.6853 1.7404 36 1 5.8876 -0.1753 2.6713 37 1 5.4606 -2.3478 4.4251 38 1 7.3647 -3.6484 6.8354 39 1 2.2490 -1.6318 -1.1527 40 1 1.7291 -1.8723 -5.3055 41 1 0.6255 -0.5803 -4.5881 42 1 2.9910 2.0769 -4.0916 43 1 2.4963 2.0152 -5.8000 44 1 1.3172 1.6469 -4.5183 45 1 3.8255 -1.2884 -6.1482 46 1 3.8714 0.4049 -6.6944 47 1 4.8593 -0.1096 -5.3057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170218892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -33.041459 kcal Electronic energy + Delta-G solvation = -21916.322613 eV Core-core repulsion = 18713.055713 eV Total energy + Delta-G solvation = -3203.266900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50301 -38.09814 -36.53489 -35.20148 -33.24321 -31.64352 -30.36147 -29.46710 -27.67542 -27.43675 -24.80393 -23.99962 -22.12597 -21.00602 -20.70207 -20.54658 -19.28576 -17.38711 -16.99866 -16.27498 -15.40472 -15.00321 -14.79674 -14.56040 -14.42640 -13.88592 -13.84924 -13.58885 -13.39221 -13.13728 -12.93619 -12.85215 -12.76874 -12.38902 -12.19149 -12.06816 -11.75643 -11.49129 -11.44786 -11.23932 -10.98673 -10.80237 -10.69581 -10.50113 -10.40636 -10.29160 -10.13869 -9.97857 -9.65461 -9.61236 -9.16252 -8.84684 -6.89172 -5.74426 -3.02766 2.35436 2.96859 3.44900 3.48090 3.49650 3.51621 4.33013 4.37668 4.48448 4.54452 4.66048 4.81438 4.89370 4.92330 5.00407 5.26758 5.27839 5.36365 5.40417 5.42770 5.46463 5.56158 5.60722 5.63015 5.66606 5.71744 5.75226 5.79727 5.80433 5.91723 5.95032 5.96784 6.11775 6.23503 6.30559 6.32036 6.39798 6.45331 6.48188 6.91063 6.95005 7.38635 7.71968 8.12816 8.45104 9.55714 10.15097 10.49699 11.48782 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002641 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.513804 B =10600.840980 C =11602.948087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.719 5.719 18 C 0.544 3.456 19 O -0.537 6.537 20 C -0.190 4.190 21 H 0.122 0.878 22 C -0.148 4.148 23 C -0.094 4.094 24 C -0.102 4.102 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.400 0.600 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.741 4.626 -22.121 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.371 5.371 18 C 0.330 3.670 19 O -0.415 6.415 20 C -0.212 4.212 21 H 0.140 0.860 22 C -0.185 4.185 23 C -0.094 4.094 24 C -0.159 4.159 25 C -0.175 4.175 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.235 0.765 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.765 5.505 -22.151 27.185 hybrid contribution 0.971 -0.868 0.679 1.469 sum -13.794 4.638 -21.472 25.939 Atomic orbital electron populations 1.22168 0.95495 1.02004 1.02379 1.21031 0.93647 0.97712 0.83935 0.89413 1.21937 0.96876 1.00917 0.96739 1.21513 0.93964 1.01071 0.98613 1.21729 0.97245 1.00264 0.97115 1.20646 0.91018 0.95306 0.90535 1.42394 1.05347 1.64960 1.25209 1.19258 0.83943 1.28322 1.05430 0.91235 1.24753 0.97750 1.00989 0.97714 1.69663 1.32787 1.40840 1.15137 0.86174 0.85067 0.77027 0.77866 1.21712 1.21753 1.20760 1.46092 1.67332 1.14132 1.09503 1.19647 0.76954 0.86711 0.83647 1.90693 1.50168 1.15751 1.84843 1.22397 1.04938 1.04544 0.89277 0.85962 1.23208 0.95231 1.01018 0.99058 1.21585 0.98121 0.94444 0.95260 1.21349 1.02493 0.91570 1.00523 1.21410 0.96515 1.01445 0.98110 0.92544 0.91579 0.92377 0.90258 0.91377 0.92143 0.92029 0.92062 0.92140 0.96650 0.96583 0.78353 0.93544 0.76532 0.87915 0.88397 0.91324 0.93362 0.91787 0.92282 0.91649 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.26 4.75 -26.73 -0.13 -1.39 16 5 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 6 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 7 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 8 N -0.74 -19.37 5.60 -59.91 -0.34 -19.71 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.94 -28.87 13.06 55.49 0.72 -28.14 16 13 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.72 -6.76 4.53 -53.81 -0.24 -7.01 16 18 C 0.54 5.95 7.56 -10.98 -0.08 5.87 16 19 O -0.54 -7.49 12.77 5.55 0.07 -7.42 16 20 C -0.19 -1.64 5.91 -91.78 -0.54 -2.19 16 21 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.15 -1.09 9.53 -26.71 -0.25 -1.34 16 23 C -0.09 -0.79 2.70 -154.49 -0.42 -1.21 16 24 C -0.10 -1.00 8.09 37.16 0.30 -0.70 16 25 C -0.12 -0.80 9.85 37.16 0.37 -0.43 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 7.75 -51.94 -0.40 0.34 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.40 3.03 8.60 -40.82 -0.35 2.68 16 40 H 0.10 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 42 H 0.07 0.80 7.26 -51.93 -0.38 0.42 16 43 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 44 H 0.06 0.70 7.01 -51.93 -0.36 0.33 16 45 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 46 H 0.06 0.40 7.93 -51.93 -0.41 -0.01 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -32.86 379.02 -9.12 -41.98 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.89 Total: 6.29 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.13 Total: -9.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.15 Total: -54.86 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.86 -9.12 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170218892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.939 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds