Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.47140 * 119.99601 * 2 1 3 5 5 C 1.52997 * 109.47452 * 185.00013 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47299 * 119.99957 * 13 11 9 16 16 H 1.48495 * 109.47075 * 240.00117 * 13 11 9 17 17 N 1.46502 * 109.47263 * 239.99805 * 2 1 3 18 18 C 1.34777 * 119.99990 * 85.00176 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 H 1.09002 * 115.55002 * 34.32438 * 20 18 17 22 22 C 1.53002 * 117.49697 * 248.62134 * 20 18 17 23 23 C 1.52998 * 117.49965 * 179.97438 * 20 18 17 24 24 C 1.52999 * 117.50127 * 214.98041 * 23 20 18 25 25 C 1.52999 * 117.49551 * 0.02562 * 23 20 18 26 26 H 1.08990 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46677 * 300.00619 * 1 2 3 28 28 H 1.08996 * 109.46657 * 60.00174 * 1 2 3 29 29 H 1.09002 * 109.46935 * 64.99887 * 4 2 1 30 30 H 1.09001 * 109.46812 * 305.00229 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 5 4 2 32 32 H 1.09001 * 109.46832 * 300.00199 * 5 4 2 33 33 H 1.09002 * 109.47103 * 59.99753 * 6 5 4 34 34 H 1.08998 * 109.46862 * 300.00565 * 6 5 4 35 35 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 37 37 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 38 38 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 39 39 H 0.96997 * 119.99511 * 264.99962 * 17 2 1 40 40 H 1.08996 * 117.50133 * 0.02562 * 22 20 18 41 41 H 1.09005 * 117.49768 * 145.02235 * 22 20 18 42 42 H 1.08993 * 109.47281 * 59.99469 * 24 23 20 43 43 H 1.08996 * 109.47030 * 179.97438 * 24 23 20 44 44 H 1.08999 * 109.46895 * 299.99714 * 24 23 20 45 45 H 1.08998 * 109.47530 * 59.99990 * 25 23 20 46 46 H 1.09008 * 109.47162 * 179.97438 * 25 23 20 47 47 H 1.08996 * 109.47137 * 299.99641 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0749 -1.3349 2.5627 7 6 5.5997 -1.2276 2.6269 8 7 6.0880 -1.9181 3.8232 9 6 7.4302 -1.9554 4.0923 10 1 8.1287 -1.4753 3.4229 11 6 7.8928 -2.6101 5.2254 12 7 7.0416 -3.1955 6.0409 13 14 9.7237 -2.6603 5.5930 14 1 10.4621 -1.9322 4.5301 15 1 9.9829 -2.0157 6.9054 16 1 10.1813 -4.0723 5.6361 17 7 2.0184 -0.6907 -1.1962 18 6 2.1472 -0.0183 -2.3571 19 8 1.8592 1.1585 -2.4115 20 6 2.6490 -0.7289 -3.5877 21 1 2.3512 -1.7733 -3.6818 22 6 4.0308 -0.3377 -4.1152 23 6 2.7725 0.0889 -4.8748 24 6 2.4694 -0.6218 -6.1953 25 6 2.3776 1.5658 -4.8139 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.7516 -1.7715 1.2057 30 1 1.6054 -0.2616 2.1370 31 1 3.8532 0.4370 1.3574 32 1 3.9994 -1.0728 0.4261 33 1 3.7865 -2.3852 2.5187 34 1 3.6402 -0.8758 3.4506 35 1 5.8885 -0.1774 2.6707 36 1 6.0340 -1.6870 1.7390 37 1 5.4607 -2.3495 4.4241 38 1 7.3649 -3.6534 6.8326 39 1 2.2491 -1.6318 -1.1525 40 1 4.5772 0.4334 -3.5720 41 1 4.6425 -1.1247 -4.5565 42 1 1.4427 -0.9875 -6.1838 43 1 2.5965 0.0773 -7.0217 44 1 3.1528 -1.4616 -6.3211 45 1 3.0041 2.0797 -4.0849 46 1 2.5158 2.0197 -5.7953 47 1 1.3320 1.6504 -4.5181 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170218894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = -33.119238 kcal Electronic energy + Delta-G solvation = -21946.451307 eV Core-core repulsion = 18743.181034 eV Total energy + Delta-G solvation = -3203.270273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.49500 -38.08956 -36.53281 -35.20175 -33.24428 -31.64406 -30.36585 -29.45409 -27.68392 -27.43643 -24.81687 -23.98540 -22.11212 -20.96968 -20.71209 -20.55613 -19.28085 -17.36908 -16.99768 -16.31313 -15.32449 -15.06946 -14.70649 -14.69242 -14.29537 -14.03663 -13.82387 -13.50402 -13.35889 -13.14317 -12.94385 -12.88576 -12.75656 -12.43018 -12.16293 -12.05271 -11.75900 -11.48489 -11.44759 -11.23526 -10.99209 -10.81456 -10.69940 -10.47507 -10.39432 -10.29334 -10.13983 -9.95762 -9.66408 -9.58856 -9.16774 -8.85407 -6.89244 -5.74662 -3.03029 2.36376 2.96539 3.44318 3.49738 3.50372 3.52236 4.34878 4.38851 4.50068 4.55980 4.66242 4.80822 4.84157 4.96166 5.00375 5.26158 5.27820 5.36692 5.42489 5.45133 5.46996 5.56144 5.62598 5.63113 5.66455 5.72072 5.75152 5.79954 5.81497 5.92003 5.93527 5.96969 6.11917 6.23655 6.30891 6.31968 6.39686 6.45450 6.48095 6.90956 6.94890 7.38809 7.72243 8.13012 8.44783 9.55516 10.14869 10.49474 11.48567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.002665 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.355538 B =10504.492086 C =11507.674705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.719 5.719 18 C 0.544 3.456 19 O -0.537 6.537 20 C -0.191 4.191 21 H 0.121 0.879 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.102 4.102 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 4.780 -22.037 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.371 5.371 18 C 0.330 3.670 19 O -0.415 6.415 20 C -0.212 4.212 21 H 0.139 0.861 22 C -0.183 4.183 23 C -0.096 4.096 24 C -0.174 4.174 25 C -0.159 4.159 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.235 0.765 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.350 5.672 -22.072 26.931 hybrid contribution 0.916 -0.906 0.673 1.453 sum -13.435 4.766 -21.399 25.712 Atomic orbital electron populations 1.22169 0.95483 1.02008 1.02408 1.21032 0.93653 0.97695 0.83937 0.89440 1.21937 0.96881 1.00915 0.96737 1.21511 0.93964 1.01041 0.98639 1.21726 0.97243 1.00259 0.97121 1.20646 0.91016 0.95308 0.90527 1.42404 1.05346 1.64974 1.25201 1.19300 0.83921 1.28222 1.05402 0.91182 1.24752 0.97750 1.01019 0.97730 1.69672 1.32683 1.40874 1.15174 0.86107 0.85072 0.77215 0.77778 1.20551 1.21856 1.21861 1.46094 1.67255 1.14192 1.09538 1.19653 0.77012 0.86698 0.83600 1.90692 1.50157 1.15847 1.84767 1.22381 1.03752 1.00709 0.94340 0.86150 1.23237 0.89236 1.03452 1.02373 1.21590 1.00598 0.96373 0.91053 1.21397 1.01672 0.99838 0.94454 1.21346 1.02789 0.91269 1.00515 0.92553 0.91580 0.92329 0.91383 0.90266 0.92053 0.92110 0.92148 0.92069 0.96590 0.96635 0.78356 0.93595 0.76540 0.88130 0.87800 0.92079 0.91645 0.92245 0.91637 0.93374 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.40 2.58 -67.93 -0.17 1.23 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.26 4.75 -26.73 -0.13 -1.39 16 5 C -0.11 -1.42 5.10 -26.74 -0.14 -1.55 16 6 C -0.13 -2.02 5.33 -26.74 -0.14 -2.16 16 7 C 0.15 3.17 6.26 -4.04 -0.03 3.15 16 8 N -0.74 -19.35 5.60 -59.91 -0.34 -19.68 16 9 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 13 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 17 N -0.72 -6.77 4.53 -53.80 -0.24 -7.01 16 18 C 0.54 5.95 7.56 -10.99 -0.08 5.87 16 19 O -0.54 -7.49 12.77 5.56 0.07 -7.42 16 20 C -0.19 -1.65 5.91 -91.77 -0.54 -2.19 16 21 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -1.20 9.53 -26.70 -0.25 -1.46 16 23 C -0.10 -0.81 2.70 -154.48 -0.42 -1.23 16 24 C -0.12 -0.75 9.85 37.16 0.37 -0.38 16 25 C -0.10 -1.00 8.09 37.16 0.30 -0.70 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 38 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.40 3.04 8.60 -40.82 -0.35 2.68 16 40 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 41 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 44 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 45 H 0.06 0.74 7.02 -51.93 -0.36 0.38 16 46 H 0.05 0.39 7.93 -51.92 -0.41 -0.02 16 47 H 0.07 0.74 7.26 -51.93 -0.38 0.36 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -32.83 379.02 -9.12 -41.95 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.89 Total: 6.34 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.13 Total: -9.53 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.15 Total: -54.81 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.83 -9.12 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170218894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.829 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds