Wall clock time and date at job start Tue Mar 31 2020 05:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46772 * 2 1 4 4 C 1.53000 * 109.46990 * 239.99673 * 2 1 3 5 5 C 1.53001 * 109.46886 * 174.99691 * 4 2 1 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47060 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47473 * 180.02562 * 7 6 5 9 9 C 1.36939 * 120.00037 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00126 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99653 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99966 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99758 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46700 * 60.00563 * 13 11 9 15 15 H 1.48496 * 109.46956 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47581 * 300.00489 * 13 11 9 17 17 N 1.46497 * 109.46892 * 120.00257 * 2 1 3 18 18 C 1.34782 * 119.99457 * 275.00095 * 17 2 1 19 19 O 1.21279 * 120.00076 * 359.97438 * 18 17 2 20 20 C 1.50707 * 119.99822 * 180.02562 * 18 17 2 21 21 H 1.08992 * 115.54857 * 325.67069 * 20 18 17 22 22 C 1.53002 * 117.49831 * 111.37357 * 20 18 17 23 23 C 1.52996 * 117.49574 * 179.97438 * 20 18 17 24 24 C 1.52997 * 117.50417 * 359.97438 * 23 20 18 25 25 C 1.53001 * 117.49709 * 145.02603 * 23 20 18 26 26 H 1.09000 * 109.46772 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46870 * 300.00190 * 1 2 3 28 28 H 1.09004 * 109.46888 * 60.00447 * 1 2 3 29 29 H 1.09001 * 109.46741 * 55.00086 * 4 2 1 30 30 H 1.09002 * 109.47398 * 295.00188 * 4 2 1 31 31 H 1.09001 * 109.46652 * 60.00345 * 5 4 2 32 32 H 1.08992 * 109.47514 * 300.00434 * 5 4 2 33 33 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 35 35 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 36 36 H 1.08998 * 109.47533 * 59.99948 * 7 6 5 37 37 H 0.97004 * 119.99396 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99359 * 179.97438 * 12 11 9 39 39 H 0.96995 * 120.00683 * 94.99827 * 17 2 1 40 40 H 1.08992 * 117.49954 * 214.98154 * 22 20 18 41 41 H 1.09007 * 117.49678 * 0.02562 * 22 20 18 42 42 H 1.09003 * 109.46887 * 59.99838 * 24 23 20 43 43 H 1.08996 * 109.47389 * 179.97438 * 24 23 20 44 44 H 1.09001 * 109.47519 * 300.00606 * 24 23 20 45 45 H 1.09005 * 109.47512 * 59.99250 * 25 23 20 46 46 H 1.09001 * 109.47279 * 180.02562 * 25 23 20 47 47 H 1.09005 * 109.46487 * 299.99612 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0748 -1.3341 -2.5632 7 6 5.5997 -1.2266 -2.6274 8 7 6.0880 -1.9162 -3.8242 9 6 7.4300 -1.9523 -4.0939 10 1 8.1285 -1.4728 -3.4243 11 6 7.8927 -2.6062 -5.2277 12 7 7.0414 -3.1911 -6.0435 13 14 9.7233 -2.6549 -5.5961 14 1 10.4353 -3.3262 -4.4791 15 1 9.9551 -3.4088 -6.8543 16 1 10.2349 -1.2690 -5.7474 17 7 2.0184 -0.6907 1.1961 18 6 2.1470 -0.0182 2.3571 19 8 1.8590 1.1586 2.4114 20 6 2.6499 -0.7285 3.5875 21 1 2.3528 -1.7729 3.6818 22 6 4.0316 -0.3362 4.1146 23 6 2.7742 0.0898 4.8743 24 6 2.3792 1.5666 4.8134 25 6 2.4723 -0.6207 6.1952 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6054 -0.2618 -2.1369 30 1 1.7517 -1.7716 -1.2056 31 1 3.9995 -1.0728 -0.4259 32 1 3.8533 0.4369 -1.3573 33 1 3.7864 -2.3844 -2.5200 34 1 3.6402 -0.8742 -3.4508 35 1 5.8884 -0.1764 -2.6704 36 1 6.0341 -1.6867 -1.7399 37 1 5.4605 -2.3466 -4.4258 38 1 7.3647 -3.6477 -6.8359 39 1 2.2490 -1.6318 1.1527 40 1 4.6439 -1.1227 4.5556 41 1 4.5768 0.4359 3.5716 42 1 1.3333 1.6511 4.5183 43 1 2.5173 2.0205 5.7947 44 1 3.0051 2.0804 4.0837 45 1 3.1559 -1.4605 6.3207 46 1 2.5999 0.0787 7.0215 47 1 1.4455 -0.9864 6.1846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170218896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:51 Heat of formation + Delta-G solvation = -32.970053 kcal Electronic energy + Delta-G solvation = -21946.417451 eV Core-core repulsion = 18743.153647 eV Total energy + Delta-G solvation = -3203.263804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49604 -38.09236 -36.53255 -35.19837 -33.24058 -31.64173 -30.36352 -29.45238 -27.68342 -27.43359 -24.81617 -23.98144 -22.10769 -20.96790 -20.71002 -20.55506 -19.28017 -17.36874 -16.99369 -16.31269 -15.32435 -15.06734 -14.70563 -14.68954 -14.29508 -14.03620 -13.82274 -13.50426 -13.35712 -13.13662 -12.94167 -12.88541 -12.75658 -12.43029 -12.16209 -12.05147 -11.75444 -11.48409 -11.44623 -11.23179 -10.98724 -10.78371 -10.69588 -10.47431 -10.42404 -10.28921 -10.14122 -9.99696 -9.65354 -9.58790 -9.16653 -8.84096 -6.89078 -5.74137 -3.02497 2.36440 2.96594 3.45540 3.49369 3.50611 3.50856 4.34888 4.39023 4.50220 4.56181 4.66456 4.80882 4.84225 4.96232 5.00513 5.26257 5.27919 5.36690 5.42596 5.45197 5.47077 5.56316 5.62664 5.63240 5.66496 5.72163 5.75218 5.80116 5.81492 5.92112 5.93606 5.97085 6.12040 6.23791 6.30972 6.32197 6.40024 6.45577 6.48321 6.91210 6.95167 7.38879 7.71633 8.13092 8.45397 9.55908 10.15314 10.49955 11.48973 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.002665 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.304911 B =10504.692175 C =11507.944126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.719 5.719 18 C 0.544 3.456 19 O -0.537 6.537 20 C -0.191 4.191 21 H 0.121 0.879 22 C -0.146 4.146 23 C -0.096 4.096 24 C -0.102 4.102 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.400 0.600 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 4.734 21.976 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.371 5.371 18 C 0.330 3.670 19 O -0.415 6.415 20 C -0.212 4.212 21 H 0.139 0.861 22 C -0.183 4.183 23 C -0.096 4.096 24 C -0.159 4.159 25 C -0.174 4.174 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.235 0.765 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.342 5.614 21.996 26.852 hybrid contribution 0.926 -0.889 -0.652 1.440 sum -13.416 4.725 21.344 25.649 Atomic orbital electron populations 1.22174 0.95485 1.02006 1.02405 1.21032 0.93652 0.97694 0.83937 0.89439 1.21937 0.96882 1.00913 0.96737 1.21511 0.93963 1.01046 0.98633 1.21727 0.97246 1.00262 0.97111 1.20644 0.91015 0.95305 0.90530 1.42387 1.05320 1.65078 1.25115 1.19212 0.83930 1.28450 1.05435 0.91289 1.24753 0.97744 1.00976 0.97713 1.69655 1.32859 1.40813 1.15097 0.86249 0.85100 0.77483 0.77266 1.21279 1.21663 1.21262 1.46093 1.67262 1.14191 1.09532 1.19657 0.77014 0.86696 0.83599 1.90692 1.50163 1.15844 1.84762 1.22380 1.03753 1.00704 0.94352 0.86146 1.23224 0.89249 1.03444 1.02372 1.21576 1.00611 0.96373 0.91054 1.21346 1.02792 0.91269 1.00513 1.21401 1.01675 0.99839 0.94450 0.92556 0.92335 0.91576 0.90267 0.91382 0.92106 0.92058 0.92148 0.92070 0.96609 0.96643 0.78352 0.93494 0.76539 0.87797 0.88132 0.91514 0.93373 0.91631 0.92244 0.91646 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.27 4.75 -26.73 -0.13 -1.39 16 5 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 6 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 7 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 8 N -0.74 -19.36 5.60 -59.91 -0.34 -19.70 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.94 -28.85 13.06 55.49 0.72 -28.12 16 13 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 N -0.72 -6.77 4.53 -53.80 -0.24 -7.02 16 18 C 0.54 5.95 7.56 -10.98 -0.08 5.87 16 19 O -0.54 -7.49 12.77 5.56 0.07 -7.42 16 20 C -0.19 -1.65 5.91 -91.77 -0.54 -2.19 16 21 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.15 -1.20 9.52 -26.75 -0.25 -1.46 16 23 C -0.10 -0.81 2.70 -154.53 -0.42 -1.23 16 24 C -0.10 -1.00 8.09 37.16 0.30 -0.70 16 25 C -0.12 -0.75 9.85 37.16 0.37 -0.38 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.75 7.75 -51.93 -0.40 0.34 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.40 3.04 8.60 -40.82 -0.35 2.69 16 40 H 0.10 0.69 8.05 -51.93 -0.42 0.28 16 41 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 42 H 0.07 0.74 7.26 -51.93 -0.38 0.36 16 43 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 44 H 0.06 0.75 7.01 -51.93 -0.36 0.38 16 45 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 46 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -32.80 379.01 -9.12 -41.91 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.89 Total: 6.44 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.13 Total: -9.57 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.15 Total: -54.84 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.80 -9.12 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170218896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.945 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds