Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47199 * 2 1 4 4 C 1.53002 * 109.46991 * 239.99722 * 2 1 3 5 5 C 1.53001 * 109.46775 * 174.99799 * 4 2 1 6 6 C 1.53002 * 109.46775 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47024 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47009 * 180.02562 * 7 6 5 9 9 C 1.36938 * 119.99828 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99916 * 359.97438 * 9 8 7 11 11 C 1.38811 * 119.99763 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00167 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99673 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47417 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47172 * 120.00191 * 13 11 9 16 16 H 1.48507 * 109.46955 * 239.99906 * 13 11 9 17 17 N 1.46502 * 109.46960 * 119.99936 * 2 1 3 18 18 C 1.34778 * 120.00062 * 274.99458 * 17 2 1 19 19 O 1.21280 * 119.99720 * 0.02562 * 18 17 2 20 20 C 1.50694 * 120.00156 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.47478 * 185.47977 * 20 18 17 22 22 C 1.53002 * 115.55777 * 279.22865 * 21 20 18 23 23 C 1.52993 * 117.49943 * 133.53288 * 21 20 18 24 24 C 1.52998 * 60.00225 * 252.51185 * 23 21 20 25 25 H 1.08994 * 109.46765 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46545 * 299.99906 * 1 2 3 27 27 H 1.08998 * 109.46952 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.47194 * 294.99768 * 4 2 1 29 29 H 1.08994 * 109.46851 * 55.00333 * 4 2 1 30 30 H 1.08998 * 109.47234 * 299.99945 * 5 4 2 31 31 H 1.09003 * 109.46846 * 60.00495 * 5 4 2 32 32 H 1.08998 * 109.47194 * 299.99969 * 6 5 4 33 33 H 1.09005 * 109.46992 * 60.00059 * 6 5 4 34 34 H 1.08998 * 109.46916 * 299.99902 * 7 6 5 35 35 H 1.09003 * 109.46915 * 60.00300 * 7 6 5 36 36 H 0.97006 * 119.99790 * 359.97438 * 8 7 6 37 37 H 0.96999 * 119.99704 * 180.02562 * 12 11 9 38 38 H 0.97005 * 120.00075 * 95.00089 * 17 2 1 39 39 H 1.08999 * 109.46873 * 65.47870 * 20 18 17 40 40 H 1.09004 * 109.47501 * 305.48119 * 20 18 17 41 41 H 1.09007 * 109.46399 * 200.53497 * 22 21 20 42 42 H 1.08994 * 109.47252 * 320.53203 * 22 21 20 43 43 H 1.08996 * 109.47378 * 80.53732 * 22 21 20 44 44 H 1.09000 * 117.50441 * 0.02562 * 23 21 20 45 45 H 1.09011 * 117.49485 * 145.02085 * 23 21 20 46 46 H 1.08998 * 117.50062 * 252.51539 * 24 23 21 47 47 H 1.08997 * 117.49816 * 107.48736 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0749 -1.3352 -2.5626 7 6 5.5998 -1.2277 -2.6267 8 7 6.0881 -1.9184 -3.8229 9 6 7.4303 -1.9556 -4.0920 10 1 8.1288 -1.4755 -3.4227 11 6 7.8930 -2.6105 -5.2251 12 7 7.0418 -3.1961 -6.0405 13 14 9.7238 -2.6607 -5.5926 14 1 10.4622 -1.9325 -4.5298 15 1 10.1816 -4.0727 -5.6355 16 1 9.9830 -2.0162 -6.9052 17 7 2.0184 -0.6906 1.1962 18 6 2.1472 -0.0182 2.3572 19 8 1.8584 1.1584 2.4116 20 6 2.6500 -0.7284 3.5875 21 6 2.5727 0.2158 4.7889 22 6 3.7199 1.2203 4.9139 23 6 1.9725 -0.3360 6.0835 24 6 1.1837 0.6696 5.2425 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 3.8532 0.4370 -1.3574 31 1 3.9995 -1.0728 -0.4259 32 1 3.7866 -2.3854 -2.5184 33 1 3.6402 -0.8761 -3.4505 34 1 5.8885 -0.1776 -2.6707 35 1 6.0341 -1.6871 -1.7387 36 1 5.4607 -2.3500 -4.4238 37 1 7.3652 -3.6540 -6.8321 38 1 2.2491 -1.6318 1.1527 39 1 3.6844 -1.0353 3.4325 40 1 2.0345 -1.6080 3.7764 41 1 3.7791 1.5781 5.9419 42 1 4.6581 0.7360 4.6431 43 1 3.5398 2.0626 4.2459 44 1 1.6331 -1.3718 6.0796 45 1 2.3951 0.0167 7.0245 46 1 1.0873 1.6838 5.6300 47 1 0.3251 0.2955 4.6850 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171842737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -34.827805 kcal Electronic energy + Delta-G solvation = -21851.452121 eV Core-core repulsion = 18648.107759 eV Total energy + Delta-G solvation = -3203.344362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24331 -38.14941 -36.69327 -35.20458 -33.24264 -31.78724 -30.46115 -29.47001 -28.14059 -27.43745 -24.23460 -22.71784 -22.39427 -21.35480 -20.74089 -20.57515 -19.19583 -17.16705 -16.99351 -16.43515 -15.78045 -15.33482 -14.97931 -14.70716 -14.32270 -14.05749 -13.89573 -13.52368 -13.21689 -13.09774 -12.95411 -12.90417 -12.57141 -12.38365 -12.15500 -11.77950 -11.74055 -11.46801 -11.43262 -11.23638 -10.98756 -10.81727 -10.69902 -10.53781 -10.39568 -10.29699 -10.14142 -9.95791 -9.67601 -9.65475 -9.15895 -8.85573 -6.89469 -5.74920 -3.03232 2.56127 2.96254 3.44176 3.49637 3.52117 3.61029 4.32947 4.47101 4.51611 4.60253 4.67117 4.72603 4.87207 4.97918 5.00615 5.18032 5.27004 5.32832 5.38401 5.42982 5.46614 5.55935 5.59739 5.63114 5.66445 5.71174 5.72307 5.77821 5.81752 5.89256 5.93096 5.97051 6.07703 6.12022 6.25569 6.31624 6.39369 6.44283 6.47744 6.90595 6.94572 7.39326 7.72100 8.14691 8.44578 9.55303 10.14644 10.49194 11.48312 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.002545 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.966359 B =10998.377669 C =11937.990432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.726 5.726 18 C 0.514 3.486 19 O -0.533 6.533 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.179 4.179 24 C -0.157 4.157 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.399 0.601 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 4.814 21.899 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.213 4.213 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.379 5.379 18 C 0.300 3.700 19 O -0.409 6.409 20 C -0.147 4.147 21 C -0.110 4.110 22 C -0.171 4.171 23 C -0.216 4.216 24 C -0.194 4.194 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.216 0.784 37 H 0.064 0.936 38 H 0.234 0.766 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.882 5.714 21.947 27.126 hybrid contribution 0.901 -0.791 -0.577 1.331 sum -13.981 4.923 21.371 26.008 Atomic orbital electron populations 1.22168 0.95563 1.01941 1.02374 1.21012 0.93601 0.97706 0.84009 0.89462 1.21936 0.96859 1.00892 0.96791 1.21512 0.93977 1.01050 0.98598 1.21732 0.97238 1.00255 0.97141 1.20649 0.91018 0.95314 0.90527 1.42407 1.05348 1.64964 1.25214 1.19302 0.83920 1.28223 1.05411 0.91177 1.24757 0.97758 1.01019 0.97732 1.69675 1.32678 1.40858 1.15177 0.86106 0.85061 0.77214 0.77777 1.20555 1.21860 1.21856 1.46171 1.67773 1.14110 1.09818 1.20602 0.77497 0.87514 0.84399 1.90688 1.49423 1.15873 1.84919 1.21272 1.03523 0.98206 0.91735 1.21030 0.96167 0.99953 0.93807 1.21322 0.95898 0.98238 1.01605 1.23219 1.04507 0.99191 0.94700 1.22854 0.94448 0.99360 1.02723 0.92601 0.92367 0.91627 0.91410 0.90314 0.92033 0.92148 0.92149 0.92069 0.96581 0.96641 0.78354 0.93597 0.76643 0.88190 0.89113 0.92667 0.92355 0.91398 0.88955 0.88753 0.88865 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.38 2.57 -67.92 -0.17 1.20 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.25 4.75 -26.73 -0.13 -1.37 16 5 C -0.11 -1.40 5.10 -26.73 -0.14 -1.53 16 6 C -0.13 -2.00 5.33 -26.73 -0.14 -2.14 16 7 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 8 N -0.74 -19.29 5.60 -59.90 -0.34 -19.62 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 N -0.73 -6.48 4.53 -53.80 -0.24 -6.73 16 18 C 0.51 5.33 7.65 -10.99 -0.08 5.24 16 19 O -0.53 -7.39 14.82 5.56 0.08 -7.31 16 20 C -0.11 -0.83 5.64 -27.88 -0.16 -0.99 16 21 C -0.11 -0.93 1.59 -154.51 -0.25 -1.18 16 22 C -0.11 -1.00 9.69 37.16 0.36 -0.64 16 23 C -0.18 -1.26 9.82 -26.74 -0.26 -1.53 16 24 C -0.16 -1.36 9.16 -26.73 -0.24 -1.60 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.40 2.76 8.60 -40.82 -0.35 2.41 16 39 H 0.10 0.68 8.06 -51.93 -0.42 0.26 16 40 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 41 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 42 H 0.06 0.47 8.06 -51.93 -0.42 0.06 16 43 H 0.07 0.71 7.87 -51.93 -0.41 0.31 16 44 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 45 H 0.09 0.60 8.08 -51.92 -0.42 0.18 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -33.14 382.91 -9.15 -42.29 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.99 Total: 6.04 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.13 Total: -10.10 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.15 Total: -54.41 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.08 Total: -7.31 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.14 -9.15 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171842737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.458 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds