Wall clock time and date at job start Tue Mar 31 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47293 * 89.99746 * 10 8 6 12 12 H 1.48504 * 109.47104 * 209.99992 * 10 8 6 13 13 H 1.48495 * 109.47249 * 329.99739 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 C 1.50705 * 109.47172 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99627 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00031 * 179.97438 * 17 16 15 20 20 C 1.46493 * 120.00006 * 179.97438 * 19 17 16 21 21 C 1.54272 * 110.03351 * 272.90916 * 20 19 17 22 22 C 1.54968 * 104.15973 * 217.13418 * 21 20 19 23 23 C 1.54893 * 102.77346 * 37.89028 * 22 21 20 24 24 C 1.53875 * 110.03158 * 155.69184 * 20 19 17 25 25 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 27 27 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 28 28 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 29 29 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 33 33 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 34 34 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 35 35 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 36 36 H 1.09007 * 109.47032 * 299.99580 * 16 15 14 37 37 H 1.08991 * 109.47451 * 59.99736 * 16 15 14 38 38 H 0.97000 * 119.99855 * 359.97438 * 19 17 16 39 39 H 1.09004 * 110.01918 * 34.30273 * 20 19 17 40 40 H 1.08994 * 110.48420 * 335.78566 * 21 20 19 41 41 H 1.09000 * 110.48241 * 98.42544 * 21 20 19 42 42 H 1.08996 * 110.71995 * 279.57433 * 22 21 20 43 43 H 1.08994 * 110.92014 * 156.29371 * 22 21 20 44 44 H 1.09004 * 110.47928 * 203.40532 * 23 22 21 45 45 H 1.08994 * 110.60053 * 80.81591 * 23 22 21 46 46 H 1.09004 * 110.03027 * 238.56712 * 24 20 19 47 47 H 1.08997 * 110.03389 * 359.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 6.2692 -0.7764 -1.9999 10 14 6.0413 -2.2416 -4.3403 11 1 6.0918 -1.2873 -5.4769 12 1 7.4024 -2.7764 -4.0821 13 1 5.1248 -3.3612 -4.6744 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 6 2.6600 0.4058 4.7515 18 8 2.3277 1.5649 4.6215 19 7 3.0864 -0.0429 5.9487 20 6 3.1489 0.8696 7.0930 21 6 4.5059 1.6032 7.1105 22 6 4.8614 1.7071 8.6153 23 6 4.3684 0.3508 9.1780 24 6 3.0612 0.0739 8.4071 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.6054 -0.2617 -2.1370 29 1 1.7518 -1.7715 -1.2056 30 1 3.9995 -1.0726 -0.4260 31 1 3.8532 0.4372 -1.3573 32 1 7.2198 -0.8022 -2.1910 33 1 2.9174 -1.1204 1.0287 34 1 2.7588 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 1.9202 -1.3567 3.8030 37 1 3.5917 -0.9261 3.3683 38 1 3.3518 -0.9701 6.0527 39 1 2.3345 1.5922 7.0390 40 1 5.2602 1.0226 6.5796 41 1 4.4085 2.5960 6.6713 42 1 4.3279 2.5355 9.0812 43 1 5.9370 1.8151 8.7545 44 1 4.1713 0.4305 10.2471 45 1 5.0996 -0.4337 8.9832 46 1 2.2048 0.4109 8.9912 47 1 2.9717 -0.9911 8.1935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:38 Heat of formation + Delta-G solvation = -76.291465 kcal Electronic energy + Delta-G solvation = -21946.823476 eV Core-core repulsion = 18741.681115 eV Total energy + Delta-G solvation = -3205.142361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09148 -38.05112 -37.06477 -33.79715 -33.57653 -32.32522 -29.71279 -29.06358 -28.75704 -27.31694 -25.09841 -22.86308 -21.30956 -21.05845 -20.54338 -20.39840 -19.45207 -17.18371 -16.58381 -16.36562 -15.82584 -15.59677 -14.95295 -14.77389 -14.54565 -14.40885 -13.72982 -13.62875 -13.34493 -12.88745 -12.48921 -12.43911 -12.14010 -11.96874 -11.81971 -11.51716 -11.43904 -11.38927 -11.34328 -11.23997 -11.07194 -10.96779 -10.96095 -10.82737 -10.46746 -10.21395 -9.81576 -9.71905 -9.25610 -9.18562 -9.01311 -8.35315 -7.95384 -6.00179 -4.02173 2.63687 3.05258 3.32066 3.38271 3.41910 4.19190 4.29879 4.46181 4.50704 4.60094 4.91537 5.06077 5.13494 5.16383 5.20706 5.22667 5.30780 5.34912 5.37054 5.45264 5.56464 5.58124 5.69695 5.72096 5.81562 5.86237 5.92940 5.97636 6.00422 6.11320 6.15417 6.28158 6.41385 6.42158 6.55898 6.59146 6.94826 7.10897 7.37955 7.52947 7.63528 7.81826 7.92733 8.00585 8.19337 8.43271 9.04679 9.61954 11.11016 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.002810 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.147974 B = 9962.945936 C =11066.514051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.689 5.689 15 C 0.075 3.925 16 C -0.140 4.140 17 C 0.517 3.483 18 O -0.540 6.540 19 N -0.730 5.730 20 C 0.139 3.861 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.350 0.650 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 0.890 22.137 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.057 0.943 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.324 5.324 15 C -0.055 4.055 16 C -0.180 4.180 17 C 0.304 3.696 18 O -0.416 6.416 19 N -0.383 5.383 20 C 0.034 3.966 21 C -0.175 4.175 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.169 4.169 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.172 0.828 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.660 1.513 22.217 23.243 hybrid contribution 1.454 -0.381 -0.973 1.791 sum -5.205 1.133 21.244 21.901 Atomic orbital electron populations 1.21790 0.95768 1.01610 1.00256 1.21584 0.94513 0.96205 0.90346 0.94334 1.21832 0.99629 0.99419 0.94355 1.19131 0.88830 0.96876 0.96869 1.21247 0.91929 1.34150 1.08318 0.92659 1.25029 0.97101 0.95664 0.96702 1.69968 1.02346 1.44250 1.36995 0.86599 0.78104 0.79961 0.83371 1.20717 1.21264 1.19861 1.60606 1.34502 1.32692 1.04593 1.21621 1.00950 0.93626 0.89273 1.21640 1.04196 0.98913 0.93241 1.20832 0.75783 0.88960 0.84058 1.90696 1.48048 1.18722 1.84155 1.46241 1.68354 1.13893 1.09804 1.21617 0.98458 0.91851 0.84637 1.22821 0.96848 1.01274 0.96559 1.22491 1.01073 0.97367 0.95329 1.22357 0.96706 0.97675 0.99462 1.22440 0.98708 1.00400 0.95390 0.92433 0.93736 0.93030 0.92718 0.92459 0.96679 0.96948 0.93061 0.82841 0.94616 0.90899 0.88165 0.88718 0.76545 0.89267 0.91026 0.91036 0.91338 0.91322 0.91473 0.91414 0.90816 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.42 37.16 0.35 -1.75 16 2 C 0.08 1.50 2.65 -67.71 -0.18 1.32 16 3 H 0.04 0.74 7.80 -51.93 -0.40 0.34 16 4 C -0.11 -2.39 4.74 -26.73 -0.13 -2.52 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.69 -11.68 6.31 -106.73 -0.67 -12.35 16 15 C 0.08 1.17 4.77 -3.83 -0.02 1.15 16 16 C -0.14 -1.70 5.96 -27.88 -0.17 -1.87 16 17 C 0.52 6.66 7.82 -10.98 -0.09 6.57 16 18 O -0.54 -9.09 15.65 5.56 0.09 -9.00 16 19 N -0.73 -6.92 5.04 -52.72 -0.27 -7.19 16 20 C 0.14 1.26 3.23 -66.81 -0.22 1.05 16 21 C -0.14 -1.24 6.54 -25.03 -0.16 -1.41 16 22 C -0.12 -0.86 6.91 -24.69 -0.17 -1.03 16 23 C -0.12 -0.74 6.83 -25.07 -0.17 -0.91 16 24 C -0.13 -0.84 6.57 -25.61 -0.17 -1.01 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.64 7.45 -51.93 -0.39 0.26 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.40 6.43 -51.93 -0.33 0.06 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.35 6.42 6.47 -39.29 -0.25 6.16 16 34 H 0.04 0.63 8.01 -51.93 -0.42 0.21 16 35 H 0.07 1.15 7.39 -51.93 -0.38 0.77 16 36 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.40 2.74 8.31 -40.82 -0.34 2.40 16 39 H 0.09 0.97 7.59 -51.93 -0.39 0.58 16 40 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.40 7.61 -51.93 -0.40 0.01 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -32.01 372.96 -9.94 -41.95 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.76 Total: 3.92 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.66 Total: -13.52 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.20 Total: -45.68 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.01 -9.94 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.338 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds