Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.53002 * 109.46965 * 119.99885 * 2 1 3 5 5 C 1.52998 * 109.46837 * 185.00004 * 4 2 1 6 6 C 1.50700 * 109.47265 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99602 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00347 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00005 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47106 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46692 * 119.99652 * 10 8 6 13 13 H 1.48498 * 109.47099 * 239.99766 * 10 8 6 14 14 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 15 15 C 1.46906 * 110.99888 * 84.99977 * 14 2 1 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 2 17 17 C 1.50706 * 109.46953 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99692 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00146 * 180.02562 * 17 16 15 20 20 C 1.46496 * 119.99875 * 180.02562 * 19 17 16 21 21 C 1.54268 * 110.02962 * 272.90505 * 20 19 17 22 22 C 1.54965 * 104.15786 * 217.13842 * 21 20 19 23 23 C 1.54894 * 102.78034 * 37.88724 * 22 21 20 24 24 C 1.53880 * 110.03242 * 155.68723 * 20 19 17 25 25 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 26 26 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 27 27 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47075 * 304.99534 * 4 2 1 29 29 H 1.08997 * 109.47201 * 65.00055 * 4 2 1 30 30 H 1.08999 * 109.47427 * 299.99661 * 5 4 2 31 31 H 1.09002 * 109.47632 * 60.00151 * 5 4 2 32 32 H 0.97000 * 120.00090 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00533 * 321.04383 * 14 2 1 34 34 H 1.09000 * 109.47033 * 300.00113 * 15 14 2 35 35 H 1.09001 * 109.46544 * 60.00058 * 15 14 2 36 36 H 1.09000 * 109.47486 * 299.99976 * 16 15 14 37 37 H 1.09001 * 109.47362 * 60.00699 * 16 15 14 38 38 H 0.96999 * 120.00043 * 359.97438 * 19 17 16 39 39 H 1.08999 * 110.02234 * 34.29432 * 20 19 17 40 40 H 1.09001 * 110.48703 * 335.77920 * 21 20 19 41 41 H 1.09000 * 110.48963 * 98.43270 * 21 20 19 42 42 H 1.09004 * 110.72159 * 279.56953 * 22 21 20 43 43 H 1.09002 * 110.92420 * 156.29698 * 22 21 20 44 44 H 1.08996 * 110.48475 * 203.40619 * 23 22 21 45 45 H 1.09000 * 110.59473 * 80.81801 * 23 22 21 46 46 H 1.08997 * 110.03289 * 238.56365 * 24 20 19 47 47 H 1.09000 * 110.02812 * 359.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3604 2.8156 9 7 6.2689 -0.7750 2.0010 10 14 6.0411 -2.2410 4.3409 11 1 4.8911 -2.8124 5.0867 12 1 6.9636 -3.3335 3.9397 13 1 6.7636 -1.2768 5.2089 14 7 2.0197 -0.6926 -1.1994 15 6 2.0824 0.2225 -2.3469 16 6 2.5962 -0.5331 -3.5741 17 6 2.6612 0.4058 -4.7512 18 8 2.3297 1.5651 -4.6211 19 7 3.0877 -0.0429 -5.9484 20 6 3.1514 0.8699 -7.0924 21 6 1.7897 0.9053 -7.8166 22 6 2.1612 1.0132 -9.3172 23 6 3.4106 0.1043 -9.4270 24 6 4.1818 0.3613 -8.1159 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -0.2617 2.1370 29 1 1.7516 -1.7715 1.2057 30 1 3.9994 -1.0728 0.4260 31 1 3.8532 0.4370 1.3574 32 1 7.2196 -0.8008 2.1920 33 1 1.4496 -1.4981 -1.4100 34 1 1.0870 0.6162 -2.5525 35 1 2.7589 1.0461 -2.1182 36 1 3.5917 -0.9264 -3.3682 37 1 1.9201 -1.3569 -3.8030 38 1 3.3532 -0.9700 -6.0523 39 1 3.4217 1.8710 -6.7565 40 1 1.2327 -0.0121 -7.6267 41 1 1.2129 1.7751 -7.5021 42 1 2.4073 2.0418 -9.5806 43 1 1.3539 0.6377 -9.9460 44 1 4.0155 0.3899 -10.2876 45 1 3.1177 -0.9432 -9.4984 46 1 4.9516 1.1158 -8.2773 47 1 4.6347 -0.5645 -7.7611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = -73.843029 kcal Electronic energy + Delta-G solvation = -21902.986398 eV Core-core repulsion = 18697.950209 eV Total energy + Delta-G solvation = -3205.036189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10421 -38.07293 -37.07223 -33.80921 -33.54142 -32.27326 -29.78372 -29.08821 -28.57389 -27.25544 -25.01865 -22.91028 -21.24797 -21.09554 -20.57914 -20.47887 -19.62406 -17.22920 -16.55042 -16.06654 -15.77290 -15.65972 -14.97025 -14.63626 -14.56287 -14.26487 -13.75297 -13.61071 -13.55666 -12.79756 -12.56998 -12.37389 -12.30751 -11.90377 -11.82605 -11.68669 -11.53097 -11.42399 -11.25936 -11.10266 -11.06315 -11.00795 -11.00050 -10.81503 -10.39475 -10.14744 -9.81203 -9.58416 -9.20153 -9.16040 -8.84734 -8.20263 -7.83237 -5.85240 -3.86160 2.62853 3.04218 3.38130 3.45258 3.49547 4.17309 4.27604 4.47469 4.56737 4.57277 4.89739 5.03833 5.10785 5.13179 5.18262 5.20837 5.27874 5.32917 5.44350 5.46219 5.50156 5.53830 5.60216 5.67380 5.68803 5.75533 5.84608 5.87566 5.95469 6.01864 6.19578 6.23817 6.34401 6.40894 6.48218 6.73550 6.94430 7.35183 7.38127 7.54406 7.86130 7.89651 8.12804 8.18453 8.27484 8.61696 9.23337 9.76230 11.25860 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.002682 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.355122 B =10436.829936 C =11418.869980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.516 4.516 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.673 5.673 15 C 0.077 3.923 16 C -0.139 4.139 17 C 0.517 3.483 18 O -0.540 6.540 19 N -0.730 5.730 20 C 0.139 3.861 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.257 0.743 33 H 0.332 0.668 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 0.384 -23.216 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.009 4.009 6 C -0.555 4.555 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.303 5.303 15 C -0.053 4.053 16 C -0.180 4.180 17 C 0.304 3.696 18 O -0.416 6.416 19 N -0.383 5.383 20 C 0.034 3.966 21 C -0.173 4.173 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.170 4.170 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.235 0.765 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.273 1.354 -22.956 24.438 hybrid contribution -0.341 -0.865 0.556 1.083 sum -8.614 0.489 -22.400 24.004 Atomic orbital electron populations 1.22533 0.98624 1.01435 1.01349 1.21718 0.90926 0.98466 0.91364 0.90927 1.21631 1.00588 0.98325 0.93074 1.19005 0.88341 0.96519 0.96987 1.21402 0.91835 1.33802 1.08445 0.93062 1.25008 0.97173 0.95847 0.96511 1.69993 1.02076 1.44491 1.36934 0.86630 0.78798 0.79511 0.83582 1.19895 1.21159 1.21206 1.60512 1.57597 1.09065 1.03121 1.21631 0.99589 0.95335 0.88748 1.21643 1.05057 0.98356 0.92919 1.20835 0.75895 0.88994 0.83912 1.90696 1.47849 1.18737 1.84367 1.46239 1.68446 1.13876 1.09715 1.21620 0.94879 0.94695 0.85414 1.22806 0.97190 1.02561 0.94775 1.22496 0.97643 1.00048 0.96093 1.22354 0.96678 0.99990 0.97149 1.22448 0.97813 1.01908 0.94869 0.92252 0.93672 0.92844 0.93529 0.93501 0.94937 0.97467 0.93343 0.85047 0.95244 0.90290 0.87563 0.89273 0.76540 0.89188 0.91226 0.91123 0.91287 0.91410 0.91433 0.91481 0.90698 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.16 37.16 0.34 -2.23 16 2 C 0.08 1.49 2.59 -67.71 -0.18 1.31 16 3 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 4 C -0.10 -2.08 4.83 -26.73 -0.13 -2.21 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 8 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 N -0.67 -10.98 5.70 -106.72 -0.61 -11.59 16 15 C 0.08 1.15 4.77 -3.82 -0.02 1.13 16 16 C -0.14 -1.65 5.96 -27.88 -0.17 -1.82 16 17 C 0.52 6.54 7.82 -10.98 -0.09 6.46 16 18 O -0.54 -8.97 15.65 5.56 0.09 -8.89 16 19 N -0.73 -6.82 5.04 -52.72 -0.27 -7.08 16 20 C 0.14 1.24 3.23 -66.81 -0.22 1.03 16 21 C -0.13 -1.11 6.54 -25.03 -0.16 -1.28 16 22 C -0.12 -0.79 6.91 -24.69 -0.17 -0.96 16 23 C -0.12 -0.70 6.83 -25.07 -0.17 -0.88 16 24 C -0.13 -0.87 6.57 -25.61 -0.17 -1.04 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 27 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.33 4.73 8.47 -39.29 -0.33 4.40 16 34 H 0.03 0.44 7.39 -51.93 -0.38 0.05 16 35 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 36 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 2.69 8.31 -40.82 -0.34 2.35 16 39 H 0.09 1.00 7.59 -51.93 -0.39 0.61 16 40 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.43 7.61 -51.93 -0.40 0.04 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.71 375.50 -9.99 -43.71 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.91 Total: 1.74 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.67 Total: -13.75 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.14 Total: -45.69 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.71 -9.99 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.135 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds