Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46881 * 2 1 4 4 C 1.53005 * 109.46857 * 240.00765 * 2 1 3 5 5 C 1.53008 * 109.46672 * 174.99785 * 4 2 1 6 6 C 1.50701 * 109.46654 * 179.97438 * 5 4 2 7 7 H 1.08002 * 120.00302 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99487 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00210 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99679 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47229 * 60.00065 * 10 8 6 12 12 H 1.48502 * 109.47199 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47130 * 300.00092 * 10 8 6 14 14 N 1.46894 * 109.47359 * 120.00547 * 2 1 3 15 15 C 1.46900 * 111.00209 * 258.39743 * 14 2 1 16 16 C 1.50695 * 109.63066 * 182.65581 * 15 14 2 17 17 N 1.34779 * 119.99905 * 275.03264 * 16 15 14 18 18 O 1.21281 * 120.00083 * 95.02508 * 16 15 14 19 19 C 1.50471 * 109.78825 * 303.14637 * 15 14 2 20 20 C 1.54063 * 112.49762 * 213.95278 * 19 15 14 21 21 C 1.54075 * 112.81842 * 318.28281 * 20 19 15 22 22 C 1.50477 * 112.49713 * 318.28636 * 21 20 19 23 23 C 1.54232 * 108.52257 * 94.14658 * 22 21 20 24 24 C 1.45543 * 112.40573 * 280.01167 * 23 22 21 25 25 H 1.09001 * 109.46849 * 186.13601 * 1 2 3 26 26 H 1.08996 * 109.47354 * 306.13132 * 1 2 3 27 27 H 1.09003 * 109.47598 * 66.13649 * 1 2 3 28 28 H 1.09001 * 109.46898 * 294.99546 * 4 2 1 29 29 H 1.08994 * 109.47175 * 54.99850 * 4 2 1 30 30 H 1.08992 * 109.46985 * 299.99473 * 5 4 2 31 31 H 1.09000 * 109.47003 * 59.99774 * 5 4 2 32 32 H 0.97004 * 119.99694 * 180.02562 * 9 8 6 33 33 H 1.00899 * 111.00241 * 134.44648 * 14 2 1 34 34 H 0.96992 * 120.00569 * 354.97023 * 17 16 15 35 35 H 0.97008 * 119.99485 * 174.70470 * 17 16 15 36 36 H 1.08999 * 108.87958 * 334.72919 * 19 15 14 37 37 H 1.09007 * 108.87812 * 93.18011 * 19 15 14 38 38 H 1.08996 * 108.81625 * 197.42665 * 20 19 15 39 39 H 1.09001 * 108.72752 * 79.08252 * 20 19 15 40 40 H 1.09000 * 108.87856 * 197.50560 * 21 20 19 41 41 H 1.09000 * 108.79372 * 79.00941 * 21 20 19 42 42 H 1.09000 * 109.62376 * 334.43669 * 22 21 20 43 43 H 1.08995 * 109.62713 * 213.85944 * 22 21 20 44 44 H 1.09001 * 108.89464 * 159.26386 * 23 22 21 45 45 H 1.08995 * 108.90085 * 40.77052 * 23 22 21 46 46 H 1.08999 * 108.89864 * 301.18326 * 24 23 22 47 47 H 1.09008 * 108.81959 * 182.64289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3239 -2.5441 7 1 3.3687 -1.8042 -3.2133 8 6 5.4184 -1.3600 -2.8158 9 7 6.2689 -0.7747 -2.0012 10 14 6.0411 -2.2405 -4.3412 11 1 5.4485 -1.6147 -5.5505 12 1 7.5211 -2.1357 -4.4037 13 1 5.6487 -3.6715 -4.2816 14 7 2.0197 -0.6926 1.1993 15 6 2.4553 0.2685 2.2213 16 6 3.0110 -0.4731 3.4096 17 7 2.1812 -0.9220 4.3721 18 8 4.2050 -0.6662 3.4997 19 6 3.5128 1.1744 1.6510 20 6 4.5640 1.5864 2.6993 21 6 3.9421 1.9266 4.0673 22 6 2.6777 2.7326 3.9406 23 6 1.4765 1.7654 3.9563 24 6 1.2568 1.1327 2.6641 25 1 -0.3633 -1.0218 0.1098 26 1 -0.3634 0.6059 0.8300 27 1 -0.3634 0.4157 -0.9398 28 1 1.7516 -1.7714 -1.2058 29 1 1.6053 -0.2615 -2.1370 30 1 3.8531 0.4371 -1.3574 31 1 3.9995 -1.0726 -0.4261 32 1 7.2195 -0.7998 -2.1927 33 1 2.7621 -1.3354 0.9678 34 1 1.2364 -0.7053 4.3379 35 1 2.5283 -1.4651 5.0971 36 1 4.0146 0.6588 0.8322 37 1 3.0344 2.0722 1.2595 38 1 5.1036 2.4592 2.3317 39 1 5.2698 0.7659 2.8283 40 1 4.6655 2.4948 4.6520 41 1 3.7173 0.9978 4.5915 42 1 2.6894 3.2868 3.0021 43 1 2.6003 3.4262 4.7778 44 1 0.5803 2.3200 4.2345 45 1 1.6561 0.9914 4.7024 46 1 1.0846 1.9070 1.9166 47 1 0.3707 0.5011 2.7280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = -42.243329 kcal Electronic energy + Delta-G solvation = -24758.045877 eV Core-core repulsion = 21554.379954 eV Total energy + Delta-G solvation = -3203.665923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32482 -37.53325 -36.28325 -34.16151 -33.30391 -32.03107 -31.60956 -29.44469 -28.51655 -25.23717 -24.40174 -24.37776 -22.26321 -21.44998 -19.88841 -19.78553 -18.61583 -17.01256 -16.64209 -16.42510 -15.98291 -15.06688 -14.79324 -14.51983 -14.32516 -14.29146 -13.54267 -13.19375 -13.00069 -12.82721 -12.62060 -12.50766 -12.39134 -11.74816 -11.72171 -11.63301 -11.24173 -11.21873 -10.92080 -10.78598 -10.60177 -10.46388 -10.38763 -10.26680 -10.13513 -10.03950 -9.76728 -9.37227 -9.26372 -9.05999 -8.99089 -8.33097 -8.05394 -5.97028 -4.00025 2.82005 3.35037 3.39809 3.41874 3.69070 4.45986 4.48032 4.67970 4.78503 4.92860 5.15633 5.27007 5.37896 5.38292 5.45260 5.49918 5.52819 5.62426 5.77417 5.82840 5.87388 5.95940 6.05215 6.12092 6.15115 6.21196 6.24030 6.29461 6.34419 6.38615 6.49608 6.55142 6.60179 6.74200 6.81111 6.86606 7.03341 7.07466 7.38646 7.46245 7.62570 7.77681 7.81307 8.00687 8.44167 8.49706 9.06114 9.64182 11.13587 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.005188 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.228034 B = 5396.253008 C = 5977.400865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.055 0.945 4 C -0.123 4.123 5 C 0.021 3.979 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.059 3.941 9 N -0.891 5.891 10 Si 0.890 3.110 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.669 5.669 15 C 0.109 3.891 16 C 0.545 3.455 17 N -0.855 5.855 18 O -0.531 6.531 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.139 4.139 24 C -0.110 4.110 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.357 0.643 34 H 0.401 0.599 35 H 0.394 0.606 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 5.253 13.807 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.073 0.927 4 C -0.161 4.161 5 C -0.016 4.016 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.530 5.530 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.304 5.304 15 C 0.015 3.985 16 C 0.331 3.669 17 N -0.421 5.421 18 O -0.406 6.406 19 C -0.179 4.179 20 C -0.154 4.154 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.178 4.178 24 C -0.148 4.148 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.232 0.768 35 H 0.225 0.775 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.573 5.158 13.973 18.862 hybrid contribution 0.949 -0.208 -1.010 1.401 sum -10.624 4.950 12.963 17.476 Atomic orbital electron populations 1.21913 0.95657 1.01680 1.00352 1.21675 0.94470 0.97338 0.89476 0.92668 1.21991 0.99949 0.99362 0.94802 1.19159 0.88528 0.96937 0.96961 1.21171 0.91929 1.34619 1.08408 0.92816 1.25014 0.97102 0.95578 0.96604 1.69951 1.02426 1.43769 1.36850 0.86688 0.77621 0.80274 0.83585 1.20322 1.21327 1.20273 1.60815 1.41382 1.17494 1.10750 1.20754 0.94590 0.92004 0.91188 1.20194 0.86114 0.77373 0.83243 1.44172 1.12583 1.56690 1.28631 1.90727 1.15314 1.56269 1.78303 1.22041 0.96651 0.99387 0.99829 1.22017 0.98718 1.01518 0.93151 1.21671 0.96701 1.00259 0.98338 1.21370 0.94704 0.97721 1.01754 1.20885 0.98827 0.99756 0.98287 1.20659 0.97461 0.98839 0.97859 0.92514 0.93334 0.93133 0.92633 0.92583 0.96775 0.96591 0.92950 0.82082 0.76830 0.77539 0.89259 0.92095 0.93373 0.89076 0.92971 0.91260 0.91627 0.92438 0.91985 0.90816 0.91158 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.29 37.16 0.35 -1.50 16 2 C 0.08 1.29 1.77 -67.71 -0.12 1.17 16 3 H 0.06 0.93 5.61 -51.93 -0.29 0.64 16 4 C -0.12 -2.45 4.60 -26.72 -0.12 -2.58 16 5 C 0.02 0.53 3.71 -27.88 -0.10 0.43 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.67 -10.67 5.86 -94.83 -0.56 -11.22 16 15 C 0.11 1.58 0.68 -133.37 -0.09 1.49 16 16 C 0.55 8.03 3.81 -10.99 -0.04 7.99 16 17 N -0.86 -8.82 7.22 31.22 0.23 -8.60 16 18 O -0.53 -9.91 13.19 5.56 0.07 -9.84 16 19 C -0.14 -2.36 3.41 -27.44 -0.09 -2.45 16 20 C -0.12 -1.92 5.07 -25.61 -0.13 -2.05 16 21 C -0.13 -1.80 5.15 -27.43 -0.14 -1.94 16 22 C -0.12 -1.32 5.61 -27.35 -0.15 -1.48 16 23 C -0.14 -1.37 5.03 -29.60 -0.15 -1.52 16 24 C -0.11 -1.24 2.27 -29.60 -0.07 -1.31 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.56 5.99 -51.93 -0.31 0.25 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.01 0.38 7.81 -51.93 -0.41 -0.03 16 31 H 0.02 0.43 6.10 -51.93 -0.32 0.11 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.36 6.80 6.50 -39.29 -0.26 6.55 16 34 H 0.40 3.25 6.65 -40.82 -0.27 2.97 16 35 H 0.39 3.52 8.93 -40.82 -0.36 3.16 16 36 H 0.09 1.86 5.56 -51.93 -0.29 1.57 16 37 H 0.06 0.96 5.97 -51.92 -0.31 0.65 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.77 6.05 -51.93 -0.31 1.45 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.98 4.17 -51.93 -0.22 0.76 16 42 H 0.07 0.78 6.98 -51.93 -0.36 0.41 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.68 4.36 -51.93 -0.23 0.46 16 46 H 0.07 0.82 6.75 -51.93 -0.35 0.47 16 47 H 0.07 0.76 6.93 -51.92 -0.36 0.40 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -31.21 330.93 -8.40 -39.62 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.57 Total: 11.62 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.28 Total: -17.22 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.41 Total: -46.06 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.21 -8.40 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.628 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds