Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47527 * 2 1 4 4 C 1.53006 * 109.47097 * 119.99884 * 2 1 3 5 5 C 1.53002 * 109.46985 * 185.00264 * 4 2 1 6 6 C 1.50704 * 109.46901 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99747 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99841 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00051 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99857 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47192 * 60.00333 * 10 8 6 12 12 H 1.48502 * 109.47137 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47296 * 300.00159 * 10 8 6 14 14 N 1.46897 * 109.47362 * 239.99986 * 2 1 3 15 15 C 1.46904 * 111.00305 * 116.77984 * 14 2 1 16 16 C 1.50699 * 108.87131 * 304.42515 * 15 14 2 17 17 N 1.34775 * 120.00321 * 313.33304 * 16 15 14 18 18 O 1.21279 * 119.99915 * 133.33313 * 16 15 14 19 19 C 1.54238 * 108.89807 * 185.81888 * 15 14 2 20 20 C 1.50551 * 108.48342 * 159.18034 * 19 15 14 21 21 C 1.54062 * 112.41927 * 94.26624 * 20 19 15 22 22 C 1.54068 * 112.81514 * 318.27983 * 21 20 19 23 23 C 1.50477 * 112.49498 * 318.28563 * 22 21 20 24 24 C 1.45543 * 108.89214 * 63.02827 * 15 14 2 25 25 H 1.08998 * 109.46776 * 177.67256 * 1 2 3 26 26 H 1.09000 * 109.46970 * 297.67315 * 1 2 3 27 27 H 1.08994 * 109.46928 * 57.67122 * 1 2 3 28 28 H 1.08998 * 109.47206 * 65.00286 * 4 2 1 29 29 H 1.09000 * 109.47137 * 305.00052 * 4 2 1 30 30 H 1.09000 * 109.47011 * 299.99866 * 5 4 2 31 31 H 1.08998 * 109.47130 * 59.99976 * 5 4 2 32 32 H 0.97001 * 119.99862 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00351 * 352.82896 * 14 2 1 34 34 H 0.97003 * 119.99134 * 5.12167 * 17 16 15 35 35 H 0.96996 * 120.00337 * 185.12508 * 17 16 15 36 36 H 1.09005 * 109.62617 * 278.97557 * 19 15 14 37 37 H 1.09004 * 109.62770 * 39.55248 * 19 15 14 38 38 H 1.09002 * 108.92126 * 333.51033 * 20 19 15 39 39 H 1.09000 * 108.91536 * 215.02142 * 20 19 15 40 40 H 1.08997 * 108.81956 * 197.42158 * 21 20 19 41 41 H 1.09000 * 108.81347 * 79.13706 * 21 20 19 42 42 H 1.08999 * 108.87792 * 197.50553 * 22 21 20 43 43 H 1.09004 * 108.87559 * 79.05806 * 22 21 20 44 44 H 1.08997 * 109.62570 * 334.43980 * 23 22 21 45 45 H 1.09001 * 109.62493 * 213.86081 * 23 22 21 46 46 H 1.09005 * 108.89369 * 303.44063 * 24 15 14 47 47 H 1.08997 * 108.89809 * 62.03511 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3242 2.5439 7 1 3.3687 -1.8046 3.2130 8 6 5.4185 -1.3613 2.8152 9 7 6.2690 -0.7758 2.0006 10 14 6.0412 -2.2419 4.3404 11 1 5.6478 -3.6726 4.2812 12 1 7.5212 -2.1371 4.4029 13 1 5.4496 -1.6154 5.5499 14 7 2.0197 -0.6925 -1.1994 15 6 2.7778 0.2226 -2.0631 16 6 1.9112 1.4101 -2.3947 17 7 0.6367 1.2243 -2.7918 18 8 2.3606 2.5329 -2.3042 19 6 3.1419 -0.5107 -3.3702 20 6 3.4415 0.5185 -4.4273 21 6 4.9453 0.8384 -4.5264 22 6 5.6229 0.9571 -3.1478 23 6 4.7777 1.7061 -2.1534 24 6 3.9546 0.6847 -1.3421 25 1 -0.3633 -1.0268 -0.0417 26 1 -0.3633 0.4773 0.9101 27 1 -0.3633 0.5495 -0.8683 28 1 1.7517 -1.7715 1.2057 29 1 1.6054 -0.2617 2.1370 30 1 3.9995 -1.0727 0.4261 31 1 3.8531 0.4370 1.3574 32 1 7.2197 -0.8016 2.1916 33 1 1.2591 -1.1206 -1.7057 34 1 0.2542 0.3329 -2.7931 35 1 0.1021 1.9819 -3.0764 36 1 4.0194 -1.1364 -3.2068 37 1 2.3025 -1.1285 -3.6894 38 1 2.9008 1.4351 -4.1916 39 1 3.0960 0.1456 -5.3915 40 1 5.0700 1.7798 -5.0614 41 1 5.4365 0.0471 -5.0925 42 1 6.5734 1.4774 -3.2656 43 1 5.8165 -0.0441 -2.7627 44 1 4.1049 2.3824 -2.6807 45 1 5.4205 2.2748 -1.4814 46 1 3.6369 1.1492 -0.4086 47 1 4.5869 -0.1728 -1.1119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = -45.148373 kcal Electronic energy + Delta-G solvation = -24878.335626 eV Core-core repulsion = 21674.543730 eV Total energy + Delta-G solvation = -3203.791895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29101 -37.23799 -36.58387 -34.00702 -33.03092 -32.19859 -31.63753 -29.80280 -28.01850 -25.11356 -24.69381 -23.87705 -22.59759 -21.35271 -20.14543 -19.03542 -18.76849 -17.23882 -16.78306 -16.12992 -16.03288 -15.21018 -14.78146 -14.41008 -14.31743 -13.94854 -13.76159 -13.18589 -12.81368 -12.73533 -12.47300 -12.37767 -12.29546 -12.08389 -11.80404 -11.43068 -11.29353 -11.05735 -10.82956 -10.66118 -10.48133 -10.42716 -10.29420 -10.20157 -9.97087 -9.90200 -9.73141 -9.42901 -9.28562 -9.06230 -8.75982 -8.18532 -7.95498 -5.85188 -3.85716 2.72095 3.40490 3.44875 3.47313 3.53166 4.29384 4.56807 4.79179 4.83195 5.03028 5.17577 5.28307 5.35136 5.47109 5.50542 5.52660 5.58324 5.63513 5.67073 5.79869 5.95547 5.99037 6.09329 6.16838 6.22218 6.32304 6.36161 6.40424 6.44772 6.54395 6.69487 6.71477 6.74382 6.82014 6.92458 6.99283 7.19292 7.25159 7.34642 7.46649 7.68287 7.87552 8.11024 8.23793 8.34989 8.61285 9.21825 9.76351 11.25318 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.005957 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.178027 B = 4699.356595 C = 5753.604964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 H 0.065 0.935 4 C -0.097 4.097 5 C 0.026 3.974 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.892 5.892 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.657 5.657 15 C 0.121 3.879 16 C 0.497 3.503 17 N -0.862 5.862 18 O -0.532 6.532 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.107 4.107 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.330 0.670 34 H 0.396 0.604 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 1.954 -14.290 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.035 4.035 3 H 0.083 0.917 4 C -0.135 4.135 5 C -0.011 4.011 6 C -0.557 4.557 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.713 3.287 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.205 1.205 14 N -0.289 5.289 15 C 0.027 3.973 16 C 0.282 3.718 17 N -0.427 5.427 18 O -0.408 6.408 19 C -0.139 4.139 20 C -0.165 4.165 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.171 4.171 24 C -0.145 4.145 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.004 2.382 -13.871 16.708 hybrid contribution -0.797 -0.120 0.467 0.931 sum -9.801 2.262 -13.404 16.759 Atomic orbital electron populations 1.22476 0.97178 1.01799 1.01990 1.21896 0.92038 0.97639 0.91912 0.91683 1.21653 1.00658 0.98618 0.92603 1.19217 0.88341 0.96334 0.97176 1.21300 0.91794 1.34090 1.08553 0.93303 1.24965 0.97137 0.95766 0.96387 1.69953 1.02144 1.44167 1.36845 0.86781 0.77564 0.80286 0.84024 1.20443 1.21450 1.20527 1.60768 1.28870 1.32111 1.07174 1.20270 0.94654 0.88165 0.94198 1.22169 0.82448 0.92725 0.74488 1.44165 1.14791 1.13035 1.70679 1.90615 1.72122 1.26085 1.51934 1.21405 1.02773 0.97589 0.92153 1.21475 0.97388 0.99269 0.98358 1.21871 0.94647 1.00666 0.97724 1.21404 0.98374 1.01321 0.94667 1.21731 0.99000 0.98540 0.97801 1.20651 0.95079 1.00233 0.98539 0.92219 0.92002 0.93114 0.93040 0.93838 0.94524 0.97319 0.93244 0.85152 0.77502 0.77492 0.89355 0.91707 0.91707 0.92418 0.92833 0.92681 0.92924 0.91823 0.88480 0.92319 0.90585 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.96 37.16 0.33 -1.87 16 2 C 0.07 1.21 1.76 -67.71 -0.12 1.09 16 3 H 0.07 1.22 5.36 -51.93 -0.28 0.94 16 4 C -0.10 -2.00 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.67 3.51 -27.88 -0.10 0.57 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.66 -9.65 5.39 -97.14 -0.52 -10.17 16 15 C 0.12 1.79 0.59 -135.62 -0.08 1.71 16 16 C 0.50 7.00 2.90 -10.99 -0.03 6.96 16 17 N -0.86 -8.31 7.19 31.22 0.22 -8.09 16 18 O -0.53 -9.40 13.54 5.56 0.08 -9.33 16 19 C -0.10 -1.25 4.95 -27.31 -0.14 -1.39 16 20 C -0.13 -1.51 5.18 -27.40 -0.14 -1.65 16 21 C -0.11 -1.39 5.85 -25.62 -0.15 -1.54 16 22 C -0.12 -1.80 5.31 -27.43 -0.15 -1.95 16 23 C -0.13 -2.31 5.23 -27.34 -0.14 -2.45 16 24 C -0.11 -1.99 2.50 -29.60 -0.07 -2.07 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.53 5.67 -51.93 -0.29 0.23 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.98 5.77 -51.93 -0.30 0.68 16 31 H 0.01 0.24 6.91 -51.93 -0.36 -0.12 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.33 3.79 6.74 -39.29 -0.26 3.53 16 34 H 0.40 2.92 6.99 -40.82 -0.29 2.64 16 35 H 0.39 3.29 8.93 -40.82 -0.36 2.93 16 36 H 0.09 1.20 6.97 -51.93 -0.36 0.84 16 37 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 38 H 0.06 0.86 4.64 -51.93 -0.24 0.62 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.02 6.62 -51.93 -0.34 0.67 16 44 H 0.10 1.72 4.08 -52.03 -0.21 1.50 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.08 1.64 4.33 -51.93 -0.22 1.41 16 47 H 0.09 1.98 5.99 -51.93 -0.31 1.67 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -32.00 332.54 -8.41 -40.42 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.59 Total: 9.48 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.33 Total: -18.29 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.44 Total: -44.33 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.00 -8.41 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.733 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds