Wall clock time and date at job start Tue Mar 31 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 5 5 C 1.53006 * 109.46726 * 175.00307 * 4 2 1 6 6 C 1.50703 * 109.46644 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00525 * 359.97438 * 6 5 4 8 8 C 1.37884 * 119.99602 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99986 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99843 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47173 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47018 * 119.99912 * 10 8 6 13 13 H 1.48497 * 109.46891 * 239.99992 * 10 8 6 14 14 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 15 15 C 1.46901 * 110.99870 * 274.99984 * 14 2 1 16 16 C 1.53004 * 109.46916 * 180.02562 * 15 14 2 17 17 C 1.50703 * 109.46807 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99851 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99756 * 179.97438 * 17 16 15 20 20 C 1.46926 * 120.63273 * 359.72034 * 19 17 16 21 21 C 1.53626 * 108.54278 * 126.36500 * 20 19 17 22 22 C 1.53039 * 109.24275 * 54.86072 * 21 20 19 23 23 C 1.53038 * 109.53613 * 298.51199 * 22 21 20 24 24 C 1.46930 * 120.63401 * 179.97438 * 19 17 16 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08994 * 109.47174 * 295.00027 * 4 2 1 29 29 H 1.08993 * 109.47332 * 55.00709 * 4 2 1 30 30 H 1.09003 * 109.47097 * 299.99468 * 5 4 2 31 31 H 1.08997 * 109.47291 * 60.00410 * 5 4 2 32 32 H 0.96998 * 119.99555 * 179.97438 * 9 8 6 33 33 H 1.00901 * 110.99869 * 151.04696 * 14 2 1 34 34 H 1.09004 * 109.47031 * 299.99620 * 15 14 2 35 35 H 1.08995 * 109.47111 * 59.99900 * 15 14 2 36 36 H 1.08995 * 109.46615 * 299.99641 * 16 15 14 37 37 H 1.08996 * 109.46939 * 60.00272 * 16 15 14 38 38 H 1.08993 * 109.59091 * 246.19867 * 20 19 17 39 39 H 1.09001 * 109.58638 * 6.62863 * 20 19 17 40 40 H 1.08996 * 109.63668 * 294.86780 * 21 20 19 41 41 H 1.09002 * 109.45705 * 174.73932 * 21 20 19 42 42 H 1.08994 * 109.46459 * 178.48618 * 22 21 20 43 43 H 1.09002 * 109.45755 * 58.52785 * 22 21 20 44 44 H 1.09005 * 109.49333 * 301.40953 * 23 22 21 45 45 H 1.09000 * 109.49748 * 181.31475 * 23 22 21 46 46 H 1.09004 * 109.58327 * 353.37585 * 24 19 17 47 47 H 1.08998 * 109.58707 * 113.79429 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 6 4.0670 -1.3234 -2.5444 7 1 3.3686 -1.8038 -3.2135 8 6 5.4183 -1.3595 -2.8163 9 7 6.2688 -0.7740 -2.0017 10 14 6.0408 -2.2389 -4.3422 11 1 4.8908 -2.8106 -5.0879 12 1 6.7632 -1.2740 -5.2095 13 1 6.9632 -3.3317 -3.9421 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2227 2.3469 16 6 2.5962 -0.5328 3.5742 17 6 2.6612 0.4062 4.7512 18 8 2.3297 1.5656 4.6210 19 7 3.0877 -0.0424 5.9483 20 6 3.4868 -1.4456 6.1231 21 6 4.9006 -1.4803 6.7232 22 6 4.9216 -0.6560 8.0126 23 6 4.5688 0.7990 7.6956 24 6 3.1571 0.8610 7.1050 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7516 -1.7715 -1.2055 29 1 1.6054 -0.2618 -2.1369 30 1 3.8532 0.4369 -1.3574 31 1 3.9994 -1.0730 -0.4259 32 1 7.2194 -0.7997 -2.1928 33 1 2.9173 -1.1205 1.0288 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6164 2.5525 36 1 1.9201 -1.3565 3.8030 37 1 3.5917 -0.9261 3.3683 38 1 2.7888 -1.9429 6.7965 39 1 3.4864 -1.9488 5.1562 40 1 5.6111 -1.0602 6.0114 41 1 5.1752 -2.5113 6.9461 42 1 5.9164 -0.7003 8.4557 43 1 4.1931 -1.0616 8.7147 44 1 5.2825 1.1975 6.9745 45 1 4.6067 1.3902 8.6106 46 1 2.9391 1.8803 6.7860 47 1 2.4326 0.5484 7.8568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:33 Heat of formation + Delta-G solvation = -67.840242 kcal Electronic energy + Delta-G solvation = -22423.196121 eV Core-core repulsion = 19218.420232 eV Total energy + Delta-G solvation = -3204.775889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.30343 -37.73032 -37.00349 -33.68901 -33.14150 -32.34416 -31.34579 -29.55390 -28.40303 -25.64738 -25.03294 -23.65823 -22.50859 -21.31335 -20.82197 -19.59036 -18.88545 -17.30117 -16.43974 -15.99792 -15.88592 -15.11774 -14.93811 -14.73605 -14.50429 -14.18352 -14.06518 -13.74299 -13.50660 -13.01382 -12.74170 -12.64664 -12.48377 -12.15848 -11.98582 -11.60733 -11.44860 -11.33494 -11.26854 -11.23544 -11.01596 -10.94876 -10.88044 -10.79488 -10.45517 -10.19632 -9.78907 -9.71534 -9.25595 -9.00405 -8.81927 -8.35824 -7.95442 -6.00462 -4.02344 2.60195 2.82517 3.30876 3.38484 3.42958 4.27497 4.45668 4.46120 4.56222 4.59342 4.77462 4.90621 4.98365 5.09488 5.17005 5.21621 5.31557 5.35852 5.43946 5.50185 5.54059 5.57960 5.64446 5.68677 5.75146 5.79065 5.84497 5.97787 6.01313 6.10712 6.15004 6.27631 6.36778 6.42085 6.56041 6.59170 6.94896 7.10837 7.24355 7.52321 7.63633 7.81796 7.92558 8.00404 8.12538 8.43184 9.04776 9.61830 11.10751 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.003287 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.783959 B = 8515.731775 C = 9702.379336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.689 5.689 15 C 0.075 3.925 16 C -0.138 4.138 17 C 0.520 3.480 18 O -0.541 6.541 19 N -0.617 5.617 20 C 0.105 3.895 21 C -0.138 4.138 22 C -0.120 4.120 23 C -0.136 4.136 24 C 0.110 3.890 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.350 0.650 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 -1.096 20.822 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.323 5.323 15 C -0.055 4.055 16 C -0.178 4.178 17 C 0.308 3.692 18 O -0.418 6.418 19 N -0.352 5.352 20 C -0.018 4.018 21 C -0.176 4.176 22 C -0.157 4.157 23 C -0.174 4.174 24 C -0.012 4.012 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.171 0.829 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.131 -0.685 20.920 21.810 hybrid contribution 1.401 -0.010 -0.919 1.675 sum -4.730 -0.695 20.001 20.564 Atomic orbital electron populations 1.21787 0.95757 1.01606 1.00255 1.21587 0.94519 0.96210 0.90338 0.94332 1.21828 0.99616 0.99409 0.94345 1.19138 0.88842 0.96893 0.96868 1.21286 0.91940 1.34075 1.08273 0.92610 1.25034 0.97112 0.95652 0.96713 1.69974 1.02294 1.44202 1.37071 0.86547 0.78844 0.79446 0.83242 1.19727 1.21078 1.21035 1.60612 1.34471 1.32672 1.04577 1.21637 1.00960 0.93627 0.89269 1.21657 1.03984 0.98944 0.93191 1.20820 0.75886 0.88788 0.83676 1.90686 1.48483 1.18769 1.83857 1.48146 1.66186 1.10954 1.09917 1.21878 0.95686 0.81818 1.02402 1.22012 0.96952 1.00884 0.97756 1.21513 1.01775 0.95136 0.97303 1.21915 0.97125 0.97169 1.01182 1.21545 0.96549 0.95746 0.87379 0.92431 0.93740 0.93036 0.92463 0.92724 0.96944 0.96682 0.93122 0.82869 0.94619 0.90880 0.88164 0.88747 0.91274 0.89057 0.91147 0.90550 0.91673 0.91829 0.91406 0.90843 0.89034 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.41 37.16 0.35 -1.75 16 2 C 0.08 1.49 2.65 -67.71 -0.18 1.32 16 3 H 0.04 0.74 7.80 -51.93 -0.40 0.34 16 4 C -0.11 -2.38 4.74 -26.73 -0.13 -2.50 16 5 C 0.02 0.50 4.80 -27.88 -0.13 0.37 16 6 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.69 -11.66 6.31 -106.72 -0.67 -12.33 16 15 C 0.08 1.17 4.77 -3.82 -0.02 1.16 16 16 C -0.14 -1.74 4.31 -27.88 -0.12 -1.86 16 17 C 0.52 7.10 7.70 -10.99 -0.08 7.02 16 18 O -0.54 -9.39 15.40 5.56 0.09 -9.30 16 19 N -0.62 -6.58 2.97 -172.53 -0.51 -7.09 16 20 C 0.11 0.82 6.37 -3.48 -0.02 0.80 16 21 C -0.14 -0.98 6.10 -26.39 -0.16 -1.14 16 22 C -0.12 -0.79 5.88 -26.69 -0.16 -0.95 16 23 C -0.14 -1.05 6.08 -26.64 -0.16 -1.21 16 24 C 0.11 1.04 6.43 -3.73 -0.02 1.02 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.35 6.40 6.47 -39.29 -0.25 6.15 16 34 H 0.04 0.63 8.01 -51.93 -0.42 0.22 16 35 H 0.07 1.17 7.39 -51.93 -0.38 0.78 16 36 H 0.10 1.10 7.93 -51.93 -0.41 0.68 16 37 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -31.99 366.65 -9.81 -41.80 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.70 Total: 2.01 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.25 Total: -11.19 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.45 Total: -45.50 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.99 -9.81 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.042 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds