Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53003 * 109.46992 * 185.00330 * 4 2 1 6 6 C 1.50701 * 109.47006 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99729 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99506 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00082 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47295 * 89.99847 * 10 8 6 12 12 H 1.48501 * 109.46881 * 209.99852 * 10 8 6 13 13 H 1.48498 * 109.47228 * 329.99385 * 10 8 6 14 14 N 1.46898 * 109.47006 * 240.00218 * 2 1 3 15 15 C 1.46906 * 110.99961 * 84.99970 * 14 2 1 16 16 C 1.52993 * 109.47228 * 179.97438 * 15 14 2 17 17 C 1.50700 * 109.47687 * 179.97438 * 16 15 14 18 18 O 1.21287 * 119.99516 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00724 * 179.97438 * 17 16 15 20 20 C 1.46935 * 120.62884 * 359.71937 * 19 17 16 21 21 C 1.53621 * 108.54014 * 126.36717 * 20 19 17 22 22 C 1.53042 * 109.24360 * 54.86154 * 21 20 19 23 23 C 1.53046 * 109.53352 * 298.50903 * 22 21 20 24 24 C 1.46921 * 120.63430 * 180.02562 * 19 17 16 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 28 28 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 29 29 H 1.09002 * 109.47223 * 64.99920 * 4 2 1 30 30 H 1.08998 * 109.46717 * 299.99642 * 5 4 2 31 31 H 1.09000 * 109.46966 * 59.99762 * 5 4 2 32 32 H 0.97006 * 119.99175 * 180.02562 * 9 8 6 33 33 H 1.00895 * 110.99835 * 208.94971 * 14 2 1 34 34 H 1.08996 * 109.46971 * 299.99790 * 15 14 2 35 35 H 1.08994 * 109.47376 * 59.99710 * 15 14 2 36 36 H 1.09009 * 109.47286 * 300.00086 * 16 15 14 37 37 H 1.09003 * 109.47627 * 59.99632 * 16 15 14 38 38 H 1.08993 * 109.58683 * 246.20102 * 20 19 17 39 39 H 1.08997 * 109.58318 * 6.62777 * 20 19 17 40 40 H 1.09003 * 109.63617 * 294.86588 * 21 20 19 41 41 H 1.09000 * 109.45785 * 174.73967 * 21 20 19 42 42 H 1.09004 * 109.46069 * 178.49000 * 22 21 20 43 43 H 1.08993 * 109.46251 * 58.52495 * 22 21 20 44 44 H 1.09002 * 109.49613 * 301.41046 * 23 22 21 45 45 H 1.08995 * 109.49411 * 181.32045 * 23 22 21 46 46 H 1.09000 * 109.58828 * 353.36983 * 24 19 17 47 47 H 1.09003 * 109.58796 * 113.79592 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3242 2.5437 7 1 3.3689 -1.8047 3.2128 8 6 5.4187 -1.3613 2.8149 9 7 5.8570 -1.9814 3.8887 10 14 6.6266 -0.5296 1.6580 11 1 6.8320 0.8778 2.0849 12 1 7.9235 -1.2521 1.6936 13 1 6.0846 -0.5535 0.2756 14 7 2.0197 -0.6924 -1.1995 15 6 2.0825 0.2227 -2.3469 16 6 2.5962 -0.5326 -3.5742 17 6 2.6600 0.4059 -4.7515 18 8 2.3269 1.5649 -4.6218 19 7 3.0872 -0.0424 -5.9485 20 6 3.5000 -1.4421 -6.1198 21 6 2.7114 -2.0439 -7.2927 22 6 2.9125 -1.1733 -8.5352 23 6 2.3756 0.2344 -8.2660 24 6 3.1555 0.8608 -7.1053 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6055 -0.2618 2.1369 29 1 1.7517 -1.7716 1.2055 30 1 3.9995 -1.0727 0.4259 31 1 3.8532 0.4370 1.3573 32 1 6.8077 -2.0071 4.0796 33 1 2.9173 -1.1204 -1.0288 34 1 1.0871 0.6164 -2.5525 35 1 2.7588 1.0463 -2.1183 36 1 3.5917 -0.9261 -3.3683 37 1 1.9202 -1.3565 -3.8031 38 1 4.5678 -1.4846 -6.3337 39 1 3.2853 -2.0004 -5.2086 40 1 1.6513 -2.0799 -7.0413 41 1 3.0721 -3.0527 -7.4933 42 1 2.3760 -1.6118 -9.3767 43 1 3.9750 -1.1176 -8.7715 44 1 1.3187 0.1770 -8.0055 45 1 2.4978 0.8472 -9.1591 46 1 2.7134 1.8224 -6.8447 47 1 4.1960 1.0019 -7.3979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172480725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -64.021748 kcal Electronic energy + Delta-G solvation = -22488.780158 eV Core-core repulsion = 19284.169852 eV Total energy + Delta-G solvation = -3204.610306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39935 -37.84266 -37.14649 -33.77992 -33.20997 -32.38632 -31.45057 -29.99822 -28.54910 -25.76821 -25.21946 -23.74843 -22.57559 -21.07958 -20.92560 -19.69422 -18.98924 -17.40122 -16.83339 -16.10576 -16.06723 -15.24966 -14.91828 -14.81655 -14.47383 -14.29168 -14.22463 -13.82008 -13.49998 -13.19865 -12.86500 -12.74984 -12.59645 -12.43374 -12.17529 -11.69922 -11.61589 -11.50692 -11.42661 -11.34192 -11.13452 -11.03557 -10.96442 -10.88589 -10.47793 -9.94261 -9.89086 -9.74962 -9.43141 -9.17552 -8.90741 -8.54705 -8.10234 -6.04765 -4.02386 2.50296 2.73007 3.29071 3.36566 3.38398 4.16503 4.36058 4.43740 4.46740 4.48951 4.68123 4.78625 4.90066 4.96535 5.08432 5.13868 5.18122 5.28972 5.36907 5.40859 5.45324 5.45938 5.54007 5.57277 5.63984 5.67880 5.73088 5.85976 5.91285 5.97867 6.01903 6.17546 6.27155 6.29497 6.43111 6.46046 6.75891 6.86993 7.14951 7.28105 7.29670 7.51747 7.75638 7.80361 8.02537 8.54398 9.01090 9.57865 11.08832 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003420 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.147430 B = 8184.623395 C = 9003.869473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.039 0.961 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.517 4.517 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.689 5.689 15 C 0.074 3.926 16 C -0.139 4.139 17 C 0.519 3.481 18 O -0.541 6.541 19 N -0.617 5.617 20 C 0.104 3.896 21 C -0.136 4.136 22 C -0.121 4.121 23 C -0.134 4.134 24 C 0.109 3.891 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.013 0.987 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.347 0.653 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 1.251 -25.762 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.053 4.053 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.192 1.192 14 N -0.323 5.323 15 C -0.056 4.056 16 C -0.179 4.179 17 C 0.308 3.692 18 O -0.418 6.418 19 N -0.351 5.351 20 C -0.019 4.019 21 C -0.174 4.174 22 C -0.158 4.158 23 C -0.173 4.173 24 C -0.013 4.013 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.110 0.890 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.228 1.583 -25.738 26.781 hybrid contribution 1.660 0.826 -0.384 1.894 sum -5.568 2.409 -26.122 26.818 Atomic orbital electron populations 1.21777 0.95398 1.01822 1.00402 1.21636 0.94938 0.96107 0.90203 0.94304 1.21662 0.97974 1.00095 0.94631 1.19615 0.92058 0.96212 0.97385 1.21135 0.92894 1.34171 1.07348 0.90969 1.25046 0.98429 0.95002 0.95067 1.69923 1.14580 1.43550 1.26218 0.86774 0.80628 0.79762 0.82025 1.20398 1.21389 1.19238 1.60597 1.34233 1.32820 1.04660 1.21654 1.01159 0.93520 0.89241 1.21667 1.03965 0.99037 0.93212 1.20799 0.75858 0.88787 0.83782 1.90691 1.48423 1.18788 1.83891 1.48142 1.66064 1.11153 1.09787 1.21895 0.98902 0.81283 0.99836 1.21998 1.01175 0.99210 0.95029 1.21523 1.01408 0.95252 0.97634 1.21920 1.00450 0.96713 0.98180 1.21576 1.00270 0.94340 0.85117 0.93664 0.92258 0.92853 0.92071 0.91811 0.96882 0.97396 0.92770 0.83181 0.90635 0.94716 0.88886 0.87990 0.91171 0.89064 0.91298 0.90538 0.91662 0.91738 0.91501 0.90810 0.89003 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.42 37.16 0.35 -1.64 16 2 C 0.08 1.36 2.65 -67.71 -0.18 1.18 16 3 H 0.04 0.69 7.80 -51.93 -0.40 0.28 16 4 C -0.11 -2.10 4.74 -26.73 -0.13 -2.23 16 5 C -0.02 -0.36 3.87 -27.88 -0.11 -0.47 16 6 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 10 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 N -0.69 -10.90 6.31 -106.73 -0.67 -11.57 16 15 C 0.07 1.08 4.77 -3.82 -0.02 1.06 16 16 C -0.14 -1.62 4.31 -27.89 -0.12 -1.74 16 17 C 0.52 6.67 7.70 -10.99 -0.08 6.58 16 18 O -0.54 -8.93 15.40 5.55 0.09 -8.85 16 19 N -0.62 -6.14 2.97 -172.48 -0.51 -6.65 16 20 C 0.10 0.74 6.37 -3.48 -0.02 0.72 16 21 C -0.14 -0.81 6.10 -26.39 -0.16 -0.97 16 22 C -0.12 -0.68 5.88 -26.69 -0.16 -0.84 16 23 C -0.13 -0.90 6.08 -26.59 -0.16 -1.07 16 24 C 0.11 0.97 6.43 -3.69 -0.02 0.95 16 25 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.01 0.30 5.48 -51.93 -0.28 0.02 16 31 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.35 5.83 6.47 -39.29 -0.25 5.58 16 34 H 0.08 1.13 7.39 -51.93 -0.38 0.75 16 35 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 36 H 0.09 1.00 7.93 -51.92 -0.41 0.59 16 37 H 0.10 1.03 7.70 -51.93 -0.40 0.63 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.61 5.93 -51.93 -0.31 0.30 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.97 7.01 -51.93 -0.36 0.61 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.62 363.05 -9.43 -42.05 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.67 Total: 1.35 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.24 Total: -11.75 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.41 Total: -45.44 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.62 -9.43 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172480725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.969 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds