Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.52760 * 109.00543 * 233.58109 * 5 4 2 7 7 C 1.53039 * 109.38459 * 305.58756 * 6 5 4 8 8 C 1.53007 * 109.46049 * 181.26411 * 7 6 5 9 9 N 1.46892 * 109.47060 * 64.92838 * 8 7 6 10 10 C 1.46902 * 110.99962 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46757 * 34.99843 * 10 9 8 12 12 C 1.53007 * 109.47348 * 275.00203 * 10 9 8 13 13 C 1.52994 * 109.47260 * 155.00002 * 10 9 8 14 14 C 1.52998 * 109.47455 * 294.99900 * 13 10 9 15 15 C 1.50694 * 109.47313 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00191 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99940 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99955 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00015 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47389 * 89.99639 * 19 17 15 21 21 H 1.48500 * 109.47058 * 209.99945 * 19 17 15 22 22 H 1.48502 * 109.47099 * 329.99677 * 19 17 15 23 23 C 1.53042 * 109.54031 * 61.24177 * 7 6 5 24 24 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 25 25 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 27 27 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 28 28 H 1.08997 * 109.58191 * 353.41302 * 5 4 2 29 29 H 1.09000 * 109.58404 * 113.84014 * 5 4 2 30 30 H 1.09004 * 109.56227 * 185.55021 * 6 5 4 31 31 H 1.09000 * 109.38786 * 65.51167 * 6 5 4 32 32 H 1.09001 * 109.44620 * 301.22706 * 7 6 5 33 33 H 1.08999 * 109.46781 * 184.93065 * 8 7 6 34 34 H 1.09002 * 109.46610 * 304.93054 * 8 7 6 35 35 H 1.00899 * 111.00426 * 303.95360 * 9 8 7 36 36 H 1.09007 * 109.46990 * 59.99281 * 12 10 9 37 37 H 1.08996 * 109.47200 * 179.97438 * 12 10 9 38 38 H 1.09003 * 109.47022 * 300.00304 * 12 10 9 39 39 H 1.09005 * 109.47136 * 55.00549 * 13 10 9 40 40 H 1.09004 * 109.47294 * 175.00208 * 13 10 9 41 41 H 1.08994 * 109.46970 * 300.00568 * 14 13 10 42 42 H 1.09004 * 109.46619 * 59.99894 * 14 13 10 43 43 H 0.96992 * 119.99675 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.49700 * 178.68705 * 23 7 6 45 45 H 1.08998 * 109.49757 * 58.58603 * 23 7 6 46 46 H 1.09005 * 109.58470 * 246.15337 * 24 4 2 47 47 H 1.08995 * 109.58817 * 6.44095 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9631 -3.2963 1.1779 7 6 3.4849 -3.4314 1.0887 8 6 3.9871 -4.3073 2.2384 9 7 3.4643 -5.6708 2.0796 10 6 3.9264 -6.5419 3.1685 11 1 3.9884 -5.9669 4.0923 12 6 5.3077 -7.1017 2.8225 13 6 2.9395 -7.6966 3.3517 14 6 1.5908 -7.1455 3.8190 15 6 0.6186 -8.2827 3.9988 16 1 0.9314 -9.2972 3.8002 17 6 -0.6701 -8.0282 4.4181 18 7 -1.5185 -9.0208 4.5755 19 14 -1.2109 -6.2738 4.7624 20 1 -1.7609 -5.6726 3.5208 21 1 -2.2568 -6.2761 5.8166 22 1 -0.0451 -5.4779 5.2234 23 6 4.1283 -2.0462 1.1845 24 6 3.6500 -1.1833 0.0119 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 0.3920 -2.2651 0.1280 29 1 1.6432 -2.9740 -0.9254 30 1 1.5067 -4.2852 1.1331 31 1 1.6952 -2.8141 2.1180 32 1 3.7533 -3.8916 0.1377 33 1 5.0767 -4.3323 2.2269 34 1 3.6431 -3.8944 3.1867 35 1 2.4569 -5.6675 2.0225 36 1 6.0109 -6.2791 2.6919 37 1 5.6508 -7.7477 3.6306 38 1 5.2457 -7.6767 1.8986 39 1 2.8101 -8.2179 2.4032 40 1 3.3265 -8.3905 4.0979 41 1 1.7203 -6.6242 4.7674 42 1 1.2037 -6.4516 3.0728 43 1 -2.4251 -8.8417 4.8700 44 1 5.2130 -2.1453 1.1443 45 1 3.8400 -1.5753 2.1243 46 1 4.0148 -1.6048 -0.9248 47 1 4.0262 -0.1667 0.1262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = -63.398944 kcal Electronic energy + Delta-G solvation = -22980.405370 eV Core-core repulsion = 19775.822071 eV Total energy + Delta-G solvation = -3204.583300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38677 -38.32053 -36.88848 -34.23944 -32.92595 -31.90606 -30.84447 -29.77623 -29.29518 -26.40880 -25.20449 -23.58039 -22.69279 -21.11363 -20.64231 -19.67310 -19.11087 -17.28226 -16.85939 -16.08762 -15.83737 -15.48816 -15.27457 -14.50533 -14.34528 -14.16631 -13.93476 -13.58183 -13.43672 -13.17206 -12.98060 -12.67047 -12.47474 -12.46409 -12.33464 -12.15722 -11.88754 -11.60205 -11.46726 -11.44212 -11.11801 -10.94087 -10.70206 -10.59136 -10.38171 -10.00978 -9.98191 -9.81972 -9.49015 -9.23020 -8.87970 -8.59822 -8.14745 -6.09438 -4.07362 2.41211 2.79198 3.22005 3.31289 3.33159 4.30052 4.32848 4.38513 4.49115 4.69181 4.81300 4.89289 4.97244 5.03451 5.11848 5.15758 5.23711 5.29614 5.35367 5.46940 5.49566 5.54315 5.57606 5.63155 5.69386 5.76945 5.81448 5.83626 5.89388 5.99226 6.08148 6.20943 6.26682 6.31674 6.37899 6.39602 6.69733 6.80540 7.17227 7.21643 7.24901 7.47107 7.70707 7.75048 7.94684 8.49496 8.96388 9.52855 11.04206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014336 B = 0.004528 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.687826 B = 6182.769464 C = 7820.697364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.554 6.554 4 N -0.612 5.612 5 C 0.107 3.893 6 C -0.138 4.138 7 C -0.085 4.085 8 C 0.064 3.936 9 N -0.687 5.687 10 C 0.079 3.921 11 H 0.037 0.963 12 C -0.135 4.135 13 C -0.107 4.107 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.072 0.928 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.268 1.268 23 C -0.128 4.128 24 C 0.112 3.888 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.347 0.653 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.011 0.989 42 H 0.007 0.993 43 H 0.263 0.737 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 14.497 -9.236 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.432 6.432 4 N -0.346 5.346 5 C -0.015 4.015 6 C -0.176 4.176 7 C -0.103 4.103 8 C -0.066 4.066 9 N -0.322 5.322 10 C -0.030 4.030 11 H 0.055 0.945 12 C -0.193 4.193 13 C -0.144 4.144 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.193 1.193 23 C -0.166 4.166 24 C -0.011 4.011 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.169 0.831 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.459 14.808 -9.611 20.027 hybrid contribution -1.053 1.001 1.065 1.802 sum 8.406 15.808 -8.545 19.839 Atomic orbital electron populations 1.21957 0.91823 1.05358 1.04363 1.20830 0.90701 0.82988 0.75297 1.90694 1.70855 1.31144 1.50537 1.48204 1.07072 1.06181 1.73166 1.21723 0.96780 0.83631 0.99385 1.21973 0.96371 1.00768 0.98500 1.21155 0.94493 0.94482 1.00214 1.21986 0.99826 0.88837 0.95947 1.60639 1.16612 1.08332 1.46626 1.21645 0.95446 0.94580 0.91347 0.94541 1.21772 0.95942 1.00118 1.01498 1.21664 0.95255 0.96094 1.01425 1.19594 0.93210 0.96987 0.95289 1.21132 0.95102 0.94298 1.45154 0.90969 1.25041 0.96656 0.96804 0.94952 1.69913 1.05582 1.31190 1.47460 0.86806 0.78503 0.85798 0.78320 1.20216 1.21374 1.19267 1.21937 1.00628 0.95349 0.98723 1.21592 0.79423 1.01688 0.98385 0.89095 0.89307 0.89202 0.89450 0.90843 0.89661 0.91565 0.89908 0.91286 0.95606 0.83073 0.93780 0.92926 0.92230 0.91850 0.92098 0.97043 0.97457 0.92727 0.90552 0.91610 0.91463 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.67 36.01 0.31 -1.07 16 2 C 0.51 5.93 7.81 -10.98 -0.09 5.84 16 3 O -0.55 -8.56 16.50 5.55 0.09 -8.47 16 4 N -0.61 -6.24 2.98 -173.00 -0.52 -6.75 16 5 C 0.11 0.94 6.32 -3.93 -0.02 0.91 16 6 C -0.14 -1.43 5.14 -26.83 -0.14 -1.57 16 7 C -0.08 -0.86 2.36 -90.57 -0.21 -1.07 16 8 C 0.06 0.77 4.94 -3.82 -0.02 0.75 16 9 N -0.69 -9.92 6.31 -106.73 -0.67 -10.60 16 10 C 0.08 1.24 2.65 -67.71 -0.18 1.06 16 11 H 0.04 0.59 7.80 -51.93 -0.40 0.19 16 12 C -0.14 -1.82 9.42 37.16 0.35 -1.47 16 13 C -0.11 -2.03 4.74 -26.73 -0.13 -2.16 16 14 C -0.01 -0.30 3.87 -27.89 -0.11 -0.41 16 15 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 19 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 23 C -0.13 -1.18 5.36 -26.59 -0.14 -1.32 16 24 C 0.11 1.08 6.44 -3.69 -0.02 1.06 16 25 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.09 0.53 7.95 -51.93 -0.41 0.12 16 27 H 0.09 0.62 7.68 -51.93 -0.40 0.22 16 28 H 0.09 0.64 5.93 -51.93 -0.31 0.33 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.96 6.62 -51.93 -0.34 0.62 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.79 7.44 -51.93 -0.39 0.41 16 34 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 35 H 0.35 5.42 4.69 -39.29 -0.18 5.23 16 36 H 0.04 0.54 7.45 -51.92 -0.39 0.15 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 42 H 0.01 0.16 5.85 -51.93 -0.30 -0.14 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.99 7.00 -51.93 -0.36 0.63 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -32.02 360.32 -8.91 -40.93 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.52 Total: 2.13 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.83 Total: -12.42 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.41 Total: -43.99 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.02 -8.91 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.468 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds