Wall clock time and date at job start Tue Mar 31 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.53003 * 109.46992 * 174.99670 * 4 2 1 6 6 C 1.50701 * 109.47006 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00318 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00072 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99736 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00176 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47281 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46815 * 120.00376 * 10 8 6 13 13 H 1.48497 * 109.47194 * 240.00138 * 10 8 6 14 14 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 15 15 C 1.46906 * 110.99961 * 275.00030 * 14 2 1 16 16 C 1.52998 * 109.46913 * 180.02562 * 15 14 2 17 17 N 1.46904 * 112.99780 * 57.84642 * 16 15 14 18 18 C 1.48527 * 111.00069 * 62.60064 * 17 16 15 19 19 C 1.54939 * 103.22661 * 159.72196 * 18 17 16 20 20 C 1.54595 * 102.91991 * 322.58278 * 19 18 17 21 21 C 1.47907 * 110.99760 * 179.97438 * 17 16 15 22 22 C 1.54031 * 113.81716 * 285.85383 * 16 15 14 23 23 O 1.44176 * 85.51611 * 223.19808 * 22 16 15 24 24 C 1.44170 * 93.34308 * 24.19569 * 23 22 16 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 29 29 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 30 30 H 1.09000 * 109.46966 * 300.00238 * 5 4 2 31 31 H 1.08998 * 109.46717 * 60.00358 * 5 4 2 32 32 H 0.96996 * 120.00301 * 179.97438 * 9 8 6 33 33 H 1.00895 * 110.99835 * 151.05029 * 14 2 1 34 34 H 1.08996 * 109.46904 * 300.00505 * 15 14 2 35 35 H 1.08996 * 109.46971 * 60.00210 * 15 14 2 36 36 H 1.09003 * 110.66795 * 278.14791 * 18 17 16 37 37 H 1.08999 * 110.67002 * 41.28876 * 18 17 16 38 38 H 1.08996 * 110.72625 * 204.22996 * 19 18 17 39 39 H 1.08997 * 110.72461 * 80.93890 * 19 18 17 40 40 H 1.08998 * 110.30990 * 263.03951 * 20 19 18 41 41 H 1.09005 * 110.39574 * 140.91594 * 20 19 18 42 42 H 1.09005 * 109.91440 * 333.50772 * 21 17 16 43 43 H 1.09004 * 109.91429 * 94.60148 * 21 17 16 44 44 H 1.08992 * 113.86694 * 337.34376 * 22 16 15 45 45 H 1.09003 * 113.86260 * 109.05276 * 22 16 15 46 46 H 1.09008 * 113.86969 * 221.66228 * 24 23 22 47 47 H 1.08996 * 113.98701 * 89.96332 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2131 8 6 5.4186 -1.3602 -2.8157 9 7 6.2690 -0.7747 -2.0011 10 14 6.0414 -2.2419 -4.3401 11 1 4.8916 -2.8142 -5.0854 12 1 6.7637 -1.2782 -5.2089 13 1 6.9641 -3.3338 -3.9381 14 7 2.0197 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5962 -0.5331 3.5741 17 7 3.9169 -1.1407 3.3627 18 6 4.9449 -0.1016 3.0991 19 6 6.2742 -0.8268 3.4269 20 6 5.9002 -1.6994 4.6470 21 6 4.3704 -1.8578 4.5742 22 6 1.5604 -1.4896 4.1943 23 8 2.0099 -0.9725 5.4628 24 6 2.4809 0.2629 4.8879 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.7517 -1.7715 -1.2057 29 1 1.6055 -0.2616 -2.1370 30 1 3.8532 0.4372 -1.3573 31 1 3.9995 -1.0727 -0.4260 32 1 7.2196 -0.8004 -2.1920 33 1 2.9173 -1.1205 1.0287 34 1 2.7588 1.0461 2.1183 35 1 1.0871 0.6161 2.5526 36 1 4.9221 0.2056 2.0535 37 1 4.8024 0.7561 3.7564 38 1 7.0507 -0.1086 3.6900 39 1 6.5905 -1.4494 2.5900 40 1 6.1848 -1.1982 5.5721 41 1 6.3852 -2.6734 4.5805 42 1 3.9091 -1.4199 5.4594 43 1 4.1067 -2.9130 4.5017 44 1 0.5276 -1.2360 3.9558 45 1 1.7881 -2.5447 4.0425 46 1 3.4387 0.5979 5.2861 47 1 1.7307 1.0531 4.8602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:29 Heat of formation + Delta-G solvation = -12.753775 kcal Electronic energy + Delta-G solvation = -23921.973664 eV Core-core repulsion = 20719.586504 eV Total energy + Delta-G solvation = -3202.387160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36621 -37.50250 -37.01219 -33.49705 -32.42954 -30.50359 -29.16772 -28.68111 -27.85989 -26.61674 -25.18917 -23.72814 -21.92961 -21.30822 -20.61922 -19.49494 -18.95049 -16.93977 -16.51657 -16.06287 -15.87239 -15.25758 -15.02103 -14.64415 -14.47224 -14.32541 -13.75994 -13.32172 -13.00959 -12.77188 -12.47406 -12.35138 -12.24997 -12.03643 -11.69943 -11.63323 -11.48424 -11.19618 -11.12755 -10.97596 -10.93952 -10.76400 -10.62840 -10.47137 -10.38649 -10.00933 -9.77711 -9.71196 -9.22920 -8.98334 -8.32701 -8.19375 -7.87213 -5.97935 -3.99057 3.32350 3.40037 3.44433 3.60316 3.81381 4.16444 4.48326 4.71496 4.82232 4.83604 5.06898 5.10799 5.12133 5.25864 5.38311 5.39965 5.43606 5.53282 5.61702 5.66511 5.75321 5.79193 5.86390 5.87900 5.91463 5.94975 5.97598 6.01406 6.08422 6.18178 6.20333 6.27160 6.37947 6.40070 6.53981 6.58795 6.95012 6.98072 7.11656 7.14565 7.57998 7.67352 7.85267 7.99942 8.09757 8.46233 9.07466 9.64742 11.13202 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015559 B = 0.005227 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.163653 B = 5355.476448 C = 6739.332485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.677 5.677 15 C 0.075 3.925 16 C 0.048 3.952 17 N -0.481 5.481 18 C 0.035 3.965 19 C -0.122 4.122 20 C -0.130 4.130 21 C 0.021 3.979 22 C 0.059 3.941 23 O -0.382 6.382 24 C 0.005 3.995 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.009 0.991 31 H 0.019 0.981 32 H 0.258 0.742 33 H 0.364 0.636 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 2.402 14.437 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.152 4.152 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.210 1.210 14 N -0.313 5.313 15 C -0.056 4.056 16 C -0.044 4.044 17 N -0.204 5.204 18 C -0.092 4.092 19 C -0.160 4.160 20 C -0.169 4.169 21 C -0.107 4.107 22 C -0.018 4.018 23 O -0.301 6.301 24 C -0.075 4.075 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.188 0.812 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.474 1.699 14.427 15.904 hybrid contribution 1.314 0.783 -0.561 1.630 sum -5.160 2.482 13.865 15.001 Atomic orbital electron populations 1.21787 0.95955 1.01635 0.99954 1.21606 0.94361 0.95957 0.90913 0.94811 1.21818 0.99733 0.99429 0.94201 1.19118 0.88757 0.96637 0.97057 1.21271 0.91923 1.34042 1.08257 0.92742 1.24993 0.97091 0.95619 0.96603 1.69963 1.02200 1.44249 1.36942 0.86585 0.78859 0.79512 0.83338 1.19777 1.21157 1.21045 1.60520 1.35865 1.31402 1.03555 1.21892 0.99295 0.93754 0.90639 1.24151 0.92262 0.93907 0.94086 1.64712 0.99690 1.22471 1.33495 1.23240 0.90888 0.93026 1.02083 1.22458 0.96447 0.98738 0.98368 1.22397 0.95678 1.00611 0.98168 1.23111 0.94599 0.99990 0.92953 1.24014 0.97446 1.00089 0.80219 1.89604 1.80344 1.30211 1.29940 1.24605 0.99862 0.89490 0.93539 0.92370 0.94006 0.93190 0.92486 0.92952 0.97234 0.96284 0.93218 0.81238 0.95265 0.91073 0.89108 0.94152 0.91306 0.89928 0.92080 0.91202 0.91028 0.90669 0.89495 0.88487 0.89572 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.42 37.16 0.35 -1.60 16 2 C 0.08 1.39 2.65 -67.71 -0.18 1.21 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.54 4.80 -27.88 -0.13 0.41 16 6 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.68 -11.15 6.31 -106.72 -0.67 -11.82 16 15 C 0.07 1.03 4.65 -3.82 -0.02 1.02 16 16 C 0.05 0.62 0.86 -130.52 -0.11 0.50 16 17 N -0.48 -6.80 4.72 -222.46 -1.05 -7.85 16 18 C 0.03 0.49 5.56 -1.90 -0.01 0.48 16 19 C -0.12 -1.61 7.06 -24.87 -0.18 -1.79 16 20 C -0.13 -1.53 6.93 -25.39 -0.18 -1.70 16 21 C 0.02 0.27 5.41 -2.77 -0.01 0.25 16 22 C 0.06 0.73 7.98 37.61 0.30 1.03 16 23 O -0.38 -4.98 10.35 -35.23 -0.36 -5.34 16 24 C 0.00 0.05 7.33 37.61 0.28 0.33 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.02 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.36 6.98 5.90 -39.29 -0.23 6.74 16 34 H 0.03 0.43 7.40 -51.93 -0.38 0.05 16 35 H 0.07 0.89 7.43 -51.93 -0.39 0.51 16 36 H 0.09 1.52 7.99 -51.93 -0.42 1.10 16 37 H 0.04 0.51 6.76 -51.93 -0.35 0.16 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.92 4.71 -51.93 -0.24 0.67 16 43 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 44 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 45 H 0.10 1.24 7.94 -51.93 -0.41 0.83 16 46 H 0.09 0.95 6.67 -51.92 -0.35 0.60 16 47 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -29.06 357.61 -9.92 -38.98 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.51 Total: 5.29 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.43 Total: -15.66 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.99 Total: -45.34 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.36 Total: -5.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.06 -9.92 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.225 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds