Wall clock time and date at job start Tue Mar 31 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47464 * 2 1 4 4 C 1.53010 * 109.46872 * 119.99497 * 2 1 3 5 5 C 1.53000 * 109.47130 * 185.00120 * 4 2 1 6 6 C 1.50691 * 109.46994 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00405 * 359.97438 * 6 5 4 8 8 C 1.37888 * 119.99895 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99719 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 119.99841 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47209 * 90.00076 * 10 8 6 12 12 H 1.48497 * 109.47202 * 209.99738 * 10 8 6 13 13 H 1.48501 * 109.47230 * 330.00050 * 10 8 6 14 14 N 1.46894 * 109.47167 * 239.99505 * 2 1 3 15 15 C 1.46897 * 111.00053 * 109.61775 * 14 2 1 16 16 H 1.09006 * 109.50124 * 34.51155 * 15 14 2 17 17 C 1.53110 * 109.50376 * 274.38985 * 15 14 2 18 18 C 1.53120 * 109.16435 * 182.40093 * 17 15 14 19 19 C 1.53039 * 109.27256 * 57.65718 * 18 17 15 20 20 N 1.46849 * 109.52284 * 300.81729 * 19 18 17 21 21 C 1.46902 * 110.99796 * 185.84273 * 20 19 18 22 22 C 1.54032 * 113.81433 * 163.49128 * 21 20 19 23 23 O 1.44181 * 85.51547 * 223.19365 * 22 21 20 24 24 C 1.44175 * 93.34106 * 24.19015 * 23 22 21 25 25 C 1.46842 * 111.19425 * 61.74903 * 20 19 18 26 26 H 1.08997 * 109.47085 * 185.12384 * 1 2 3 27 27 H 1.09004 * 109.46877 * 305.12840 * 1 2 3 28 28 H 1.08997 * 109.46862 * 65.12695 * 1 2 3 29 29 H 1.09005 * 109.46649 * 305.00040 * 4 2 1 30 30 H 1.08998 * 109.47009 * 65.00143 * 4 2 1 31 31 H 1.08998 * 109.47074 * 300.00181 * 5 4 2 32 32 H 1.09004 * 109.47020 * 59.99707 * 5 4 2 33 33 H 0.97001 * 119.99799 * 180.02562 * 9 8 6 34 34 H 1.00907 * 110.99454 * 233.56916 * 14 2 1 35 35 H 1.09003 * 109.52422 * 62.49832 * 17 15 14 36 36 H 1.09001 * 109.52338 * 302.31208 * 17 15 14 37 37 H 1.08994 * 109.50521 * 297.71777 * 18 17 15 38 38 H 1.09003 * 109.50671 * 177.59186 * 18 17 15 39 39 H 1.08998 * 109.46396 * 60.84203 * 19 18 17 40 40 H 1.09004 * 109.46067 * 180.80616 * 19 18 17 41 41 H 1.09008 * 112.99943 * 295.47582 * 21 20 19 42 42 H 1.08995 * 113.86613 * 337.33814 * 22 21 20 43 43 H 1.09005 * 113.86605 * 109.05102 * 22 21 20 44 44 H 1.08999 * 113.87018 * 221.65799 * 24 23 22 45 45 H 1.09007 * 113.86125 * 89.95380 * 24 23 22 46 46 H 1.09000 * 109.46622 * 58.27263 * 25 20 19 47 47 H 1.09004 * 109.46535 * 178.25225 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3139 6 6 4.0670 -1.3230 2.5447 7 1 3.3685 -1.8027 3.2143 8 6 5.4184 -1.3599 2.8161 9 7 5.8566 -1.9797 3.8900 10 14 6.6265 -0.5296 1.6585 11 1 6.8321 0.8782 2.0840 12 1 7.9234 -1.2520 1.6950 13 1 6.0846 -0.5547 0.2761 14 7 2.0197 -0.6926 -1.1993 15 6 2.6293 0.2547 -2.1422 16 1 3.1299 1.0486 -1.5879 17 6 1.5416 0.8598 -3.0338 18 6 2.1921 1.7999 -4.0525 19 6 3.2243 1.0212 -4.8713 20 7 4.2432 0.4629 -3.9732 21 6 5.3253 -0.1738 -4.7359 22 6 6.6039 -0.4210 -3.9134 23 8 7.3087 0.0614 -5.0750 24 6 6.1770 0.8165 -5.5523 25 6 3.6488 -0.4792 -3.0164 26 1 -0.3633 -1.0235 0.0918 27 1 -0.3633 0.5914 0.8405 28 1 -0.3633 0.4322 -0.9323 29 1 1.6053 -0.2615 2.1371 30 1 1.7517 -1.7714 1.2058 31 1 3.9995 -1.0728 0.4262 32 1 3.8532 0.4371 1.3574 33 1 6.8073 -2.0054 4.0811 34 1 2.6677 -1.4262 -0.9539 35 1 0.8369 1.4202 -2.4194 36 1 1.0151 0.0625 -3.5583 37 1 2.6856 2.6186 -3.5289 38 1 1.4275 2.2010 -4.7178 39 1 2.7278 0.2112 -5.4056 40 1 3.6996 1.6910 -5.5879 41 1 4.9915 -1.0411 -5.3057 42 1 6.6985 0.2249 -3.0405 43 1 6.7886 -1.4719 -3.6904 44 1 6.0230 0.7472 -6.6291 45 1 6.1412 1.8403 -5.1798 46 1 3.1504 -1.2823 -3.5593 47 1 4.4324 -0.8991 -2.3856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:10 Heat of formation + Delta-G solvation = -22.662574 kcal Electronic energy + Delta-G solvation = -23570.522727 eV Core-core repulsion = 20367.705889 eV Total energy + Delta-G solvation = -3202.816838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73625 -38.88885 -36.73093 -33.58597 -32.68784 -31.72842 -29.92645 -28.40415 -27.88237 -26.57250 -25.18990 -23.86513 -22.40399 -21.12097 -20.28082 -19.95280 -19.50948 -17.09811 -16.82239 -16.54047 -15.98375 -15.27729 -14.94175 -14.91020 -14.68967 -14.31165 -14.07686 -13.49955 -13.20356 -12.92387 -12.87417 -12.76307 -12.57825 -12.44586 -12.28169 -11.64667 -11.44049 -11.42239 -11.29226 -11.15848 -11.04676 -10.86752 -10.77522 -10.36356 -10.19262 -9.95011 -9.87680 -9.78655 -9.52611 -9.20804 -8.57932 -8.57120 -8.12411 -6.06992 -4.05148 3.27731 3.36075 3.36992 3.51924 3.56451 3.93696 4.41826 4.45927 4.70176 4.80064 4.88026 4.90406 5.04010 5.14505 5.26393 5.26562 5.27428 5.32317 5.39675 5.45120 5.52294 5.59843 5.68863 5.72333 5.78192 5.83168 5.84731 5.92450 5.97060 5.97879 6.08623 6.11506 6.27684 6.33386 6.40858 6.45119 6.69290 6.81495 6.83911 6.86103 7.24466 7.27445 7.51036 7.74263 7.76336 8.51461 8.98456 9.55497 11.06501 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.006116 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.454108 B = 4577.398308 C = 6593.097474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.051 0.949 4 C -0.117 4.117 5 C -0.012 4.012 6 C -0.520 4.520 7 H 0.071 0.929 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.683 5.683 15 C 0.093 3.907 16 H 0.054 0.946 17 C -0.107 4.107 18 C -0.117 4.117 19 C 0.055 3.945 20 N -0.527 5.527 21 C 0.010 3.990 22 C 0.046 3.954 23 O -0.383 6.383 24 C 0.048 3.952 25 C 0.052 3.948 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.348 0.652 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.043 0.957 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.248 6.538 -19.737 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 H 0.069 0.931 4 C -0.155 4.155 5 C -0.050 4.050 6 C -0.558 4.558 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.316 5.316 15 C -0.018 4.018 16 H 0.072 0.928 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.072 4.072 20 N -0.254 5.254 21 C -0.098 4.098 22 C -0.031 4.031 23 O -0.300 6.300 24 C -0.030 4.030 25 C -0.076 4.076 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.209 6.822 -19.780 21.825 hybrid contribution 1.078 -0.113 -0.357 1.141 sum -5.132 6.709 -20.136 21.836 Atomic orbital electron populations 1.21804 0.95501 1.01547 1.00323 1.21749 0.94890 0.96702 0.89569 0.93075 1.21886 0.98210 0.99894 0.95512 1.19581 0.91827 0.96236 0.97335 1.21130 0.92895 1.34398 1.07369 0.91046 1.25041 0.98425 0.94939 0.95042 1.69912 1.14631 1.43425 1.26206 0.86788 0.80641 0.79761 0.82101 1.20403 1.21400 1.19067 1.60647 1.42735 1.13402 1.14834 1.21542 0.92768 0.94250 0.93213 0.92807 1.21615 0.97627 0.98412 0.96867 1.21594 0.97356 0.98610 0.97980 1.22068 0.92606 0.98048 0.94493 1.62249 1.11230 1.34877 1.17074 1.25077 0.92310 0.97080 0.95378 1.24083 0.87627 1.01012 0.90340 1.89693 1.35262 1.66427 1.38668 1.24014 0.83430 0.96382 0.99125 1.22233 0.97122 0.93487 0.94716 0.92682 0.93219 0.93280 0.92095 0.92094 0.97092 0.97414 0.92738 0.83103 0.91764 0.91767 0.91174 0.91443 0.94789 0.90934 0.90612 0.88954 0.89062 0.89454 0.89279 0.93903 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.52 37.16 0.35 -1.46 16 2 C 0.08 1.27 2.67 -67.71 -0.18 1.09 16 3 H 0.05 0.84 7.16 -51.93 -0.37 0.46 16 4 C -0.12 -2.24 4.53 -26.73 -0.12 -2.36 16 5 C -0.01 -0.29 3.89 -27.89 -0.11 -0.39 16 6 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 7 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 10 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 N -0.68 -10.19 6.14 -99.65 -0.61 -10.80 16 15 C 0.09 1.26 2.57 -67.64 -0.17 1.08 16 16 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 17 C -0.11 -1.22 5.49 -26.61 -0.15 -1.36 16 18 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 19 C 0.06 0.53 5.38 -3.83 -0.02 0.51 16 20 N -0.53 -6.04 4.60 -234.60 -1.08 -7.12 16 21 C 0.01 0.11 3.40 -66.64 -0.23 -0.11 16 22 C 0.05 0.57 8.34 37.61 0.31 0.88 16 23 O -0.38 -5.03 12.45 -35.23 -0.44 -5.47 16 24 C 0.05 0.48 8.09 37.61 0.30 0.78 16 25 C 0.05 0.67 4.67 -3.83 -0.02 0.65 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.62 7.19 -51.93 -0.37 0.24 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.01 0.25 5.88 -51.93 -0.31 -0.06 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.35 5.67 6.37 -39.29 -0.25 5.42 16 35 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.60 7.40 -51.93 -0.38 0.21 16 41 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -30.21 359.15 -9.96 -40.17 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.73 Total: 3.03 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.62 Total: -15.16 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.92 Total: -44.99 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.44 Total: -5.47 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.21 -9.96 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.508 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds