Wall clock time and date at job start Tue Mar 31 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47464 * 2 1 4 4 C 1.53010 * 109.46872 * 119.99497 * 2 1 3 5 5 C 1.53000 * 109.47130 * 185.00120 * 4 2 1 6 6 C 1.50691 * 109.46994 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00405 * 359.97438 * 6 5 4 8 8 C 1.37888 * 119.99895 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99719 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 119.99841 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47209 * 90.00076 * 10 8 6 12 12 H 1.48497 * 109.47202 * 209.99738 * 10 8 6 13 13 H 1.48501 * 109.47230 * 330.00050 * 10 8 6 14 14 N 1.46894 * 109.47167 * 239.99505 * 2 1 3 15 15 C 1.46897 * 111.00053 * 109.61775 * 14 2 1 16 16 H 1.09006 * 109.50124 * 34.51155 * 15 14 2 17 17 C 1.53110 * 109.50376 * 274.38985 * 15 14 2 18 18 C 1.53120 * 109.16435 * 182.40093 * 17 15 14 19 19 C 1.53039 * 109.27256 * 57.65718 * 18 17 15 20 20 N 1.46849 * 109.52284 * 300.81729 * 19 18 17 21 21 C 1.46902 * 110.99796 * 185.84273 * 20 19 18 22 22 C 1.54032 * 113.81433 * 163.49128 * 21 20 19 23 23 O 1.44181 * 85.51547 * 223.19365 * 22 21 20 24 24 C 1.44175 * 93.34106 * 24.19015 * 23 22 21 25 25 C 1.46842 * 111.19425 * 61.74903 * 20 19 18 26 26 H 1.08997 * 109.47085 * 185.12384 * 1 2 3 27 27 H 1.09004 * 109.46877 * 305.12840 * 1 2 3 28 28 H 1.08997 * 109.46862 * 65.12695 * 1 2 3 29 29 H 1.09005 * 109.46649 * 305.00040 * 4 2 1 30 30 H 1.08998 * 109.47009 * 65.00143 * 4 2 1 31 31 H 1.08998 * 109.47074 * 300.00181 * 5 4 2 32 32 H 1.09004 * 109.47020 * 59.99707 * 5 4 2 33 33 H 0.97001 * 119.99799 * 180.02562 * 9 8 6 34 34 H 1.00907 * 110.99454 * 233.56916 * 14 2 1 35 35 H 1.09003 * 109.52422 * 62.49832 * 17 15 14 36 36 H 1.09001 * 109.52338 * 302.31208 * 17 15 14 37 37 H 1.08994 * 109.50521 * 297.71777 * 18 17 15 38 38 H 1.09003 * 109.50671 * 177.59186 * 18 17 15 39 39 H 1.08998 * 109.46396 * 60.84203 * 19 18 17 40 40 H 1.09004 * 109.46067 * 180.80616 * 19 18 17 41 41 H 1.09008 * 112.99943 * 295.47582 * 21 20 19 42 42 H 1.08995 * 113.86613 * 337.33814 * 22 21 20 43 43 H 1.09005 * 113.86605 * 109.05102 * 22 21 20 44 44 H 1.08999 * 113.87018 * 221.65799 * 24 23 22 45 45 H 1.09007 * 113.86125 * 89.95380 * 24 23 22 46 46 H 1.09000 * 109.46622 * 58.27263 * 25 20 19 47 47 H 1.09004 * 109.46535 * 178.25225 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.6132 1.3139 6 6 4.0670 -1.3230 2.5447 7 1 3.3685 -1.8027 3.2143 8 6 5.4184 -1.3599 2.8161 9 7 5.8566 -1.9797 3.8900 10 14 6.6265 -0.5296 1.6585 11 1 6.8321 0.8782 2.0840 12 1 7.9234 -1.2520 1.6950 13 1 6.0846 -0.5547 0.2761 14 7 2.0197 -0.6926 -1.1993 15 6 2.6293 0.2547 -2.1422 16 1 3.1299 1.0486 -1.5879 17 6 1.5416 0.8598 -3.0338 18 6 2.1921 1.7999 -4.0525 19 6 3.2243 1.0212 -4.8713 20 7 4.2432 0.4629 -3.9732 21 6 5.3253 -0.1738 -4.7359 22 6 6.6039 -0.4210 -3.9134 23 8 7.3087 0.0614 -5.0750 24 6 6.1770 0.8165 -5.5523 25 6 3.6488 -0.4792 -3.0164 26 1 -0.3633 -1.0235 0.0918 27 1 -0.3633 0.5914 0.8405 28 1 -0.3633 0.4322 -0.9323 29 1 1.6053 -0.2615 2.1371 30 1 1.7517 -1.7714 1.2058 31 1 3.9995 -1.0728 0.4262 32 1 3.8532 0.4371 1.3574 33 1 6.8073 -2.0054 4.0811 34 1 2.6677 -1.4262 -0.9539 35 1 0.8369 1.4202 -2.4194 36 1 1.0151 0.0625 -3.5583 37 1 2.6856 2.6186 -3.5289 38 1 1.4275 2.2010 -4.7178 39 1 2.7278 0.2112 -5.4056 40 1 3.6996 1.6910 -5.5879 41 1 4.9915 -1.0411 -5.3057 42 1 6.6985 0.2249 -3.0405 43 1 6.7886 -1.4719 -3.6904 44 1 6.0230 0.7472 -6.6291 45 1 6.1412 1.8403 -5.1798 46 1 3.1504 -1.2823 -3.5593 47 1 4.4324 -0.8991 -2.3856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:09 Heat of formation + Delta-G solvation = -44.175191 kcal Electronic energy + Delta-G solvation = -23571.455584 eV Core-core repulsion = 20367.705889 eV Total energy + Delta-G solvation = -3203.749695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61466 -39.90938 -37.94738 -35.28108 -34.07734 -32.91725 -31.56366 -29.34908 -28.85437 -27.46528 -26.99254 -24.76160 -23.39449 -22.79170 -21.40069 -21.02474 -20.57885 -18.95673 -17.98820 -17.40411 -16.90780 -16.50056 -16.43620 -16.10983 -15.81676 -15.54702 -15.12941 -14.82592 -14.64974 -14.22775 -14.13724 -13.78644 -13.70267 -13.60272 -13.50201 -13.19170 -12.91218 -12.60721 -12.38726 -12.33935 -12.11794 -12.00403 -11.78574 -11.76431 -11.61274 -11.44077 -11.30300 -11.24802 -11.03364 -10.80054 -10.74690 -9.42673 -9.34268 -8.32647 -6.36282 1.31352 1.32296 1.43570 2.31293 2.64141 2.70464 3.02733 3.09800 3.39030 3.77735 3.93821 3.99124 4.02576 4.11217 4.23484 4.25063 4.37460 4.39185 4.41933 4.46093 4.51025 4.55550 4.65677 4.72246 4.75392 4.86413 4.90696 4.92903 4.96496 4.99958 5.03646 5.06538 5.09480 5.12331 5.14715 5.30200 5.44586 5.46187 5.51487 5.54995 5.63913 5.92460 6.03804 6.26096 6.26546 6.46407 6.72039 7.28310 8.84259 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.006116 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.454108 B = 4577.398308 C = 6593.097474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.090 3.910 3 H 0.048 0.952 4 C -0.109 4.109 5 C -0.005 4.005 6 C -0.530 4.530 7 H 0.031 0.969 8 C 0.007 3.993 9 N -0.950 5.950 10 Si 0.947 3.053 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.244 1.244 14 N -0.679 5.679 15 C 0.092 3.908 16 H 0.033 0.967 17 C -0.100 4.100 18 C -0.112 4.112 19 C 0.055 3.945 20 N -0.536 5.536 21 C 0.017 3.983 22 C 0.038 3.962 23 O -0.406 6.406 24 C 0.052 3.948 25 C 0.059 3.941 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.339 0.661 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 7.969 -22.809 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.020 4.020 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.042 4.042 6 C -0.568 4.568 7 H 0.050 0.950 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.771 3.229 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.167 1.167 14 N -0.312 5.312 15 C -0.018 4.018 16 H 0.051 0.949 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.072 4.072 20 N -0.263 5.263 21 C -0.092 4.092 22 C -0.039 4.039 23 O -0.324 6.324 24 C -0.024 4.024 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.895 8.267 -22.871 25.278 hybrid contribution 1.247 -0.592 0.673 1.536 sum -5.648 7.675 -22.198 24.157 Atomic orbital electron populations 1.21733 0.93406 1.01770 1.01539 1.21645 0.96442 0.95839 0.88091 0.93343 1.21773 0.95554 1.00055 0.97370 1.19482 0.94485 0.95234 0.95021 1.21494 0.92574 1.34236 1.08538 0.95019 1.25974 1.00599 0.95654 0.96753 1.70063 1.15276 1.45330 1.28445 0.85709 0.77917 0.78571 0.80742 1.19734 1.21024 1.16745 1.60778 1.42567 1.13366 1.14455 1.21601 0.93683 0.93377 0.93134 0.94903 1.21557 0.96821 0.98650 0.96821 1.21584 0.97814 0.97860 0.97791 1.22162 0.92268 0.98428 0.94379 1.62240 1.11907 1.34506 1.17674 1.25017 0.91499 0.97694 0.94965 1.24097 0.88909 1.00870 0.90027 1.89669 1.36766 1.67067 1.38928 1.24183 0.81725 0.96016 1.00498 1.22086 0.96314 0.93764 0.94805 0.92904 0.92422 0.91705 0.92734 0.92766 0.96300 0.97424 0.92531 0.84200 0.91870 0.91594 0.91937 0.89138 0.94193 0.89094 0.89755 0.90365 0.88778 0.86905 0.88983 0.93545 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.52 71.98 0.69 -2.49 16 2 C 0.09 2.71 2.67 44.92 0.12 2.83 16 3 H 0.05 1.51 7.16 -2.39 -0.02 1.49 16 4 C -0.11 -4.18 4.53 30.60 0.14 -4.05 16 5 C 0.00 -0.22 3.89 29.84 0.12 -0.10 16 6 C -0.53 -30.75 9.66 25.60 0.25 -30.50 16 7 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 8 C 0.01 0.42 5.47 84.66 0.46 0.88 16 9 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 10 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 14 N -0.68 -19.40 6.14 -469.19 -2.88 -22.28 16 15 C 0.09 2.35 2.57 44.97 0.12 2.47 16 16 H 0.03 0.99 7.38 -2.38 -0.02 0.97 16 17 C -0.10 -2.01 5.49 30.67 0.17 -1.84 16 18 C -0.11 -1.79 6.09 30.65 0.19 -1.61 16 19 C 0.05 0.86 5.38 86.33 0.46 1.32 16 20 N -0.54 -11.06 4.60 -907.19 -4.18 -15.24 16 21 C 0.02 0.33 3.40 45.61 0.15 0.48 16 22 C 0.04 0.89 8.34 72.27 0.60 1.49 16 23 O -0.41 -10.05 12.45 -148.98 -1.86 -11.91 16 24 C 0.05 0.91 8.09 72.27 0.58 1.49 16 25 C 0.06 1.41 4.67 86.33 0.40 1.82 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.44 7.19 -2.39 -0.02 1.42 16 29 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.02 0.84 5.88 -2.39 -0.01 0.83 16 32 H 0.01 0.35 7.57 -2.38 -0.02 0.33 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.34 10.77 6.37 -89.69 -0.57 10.20 16 35 H 0.06 1.29 7.20 -2.39 -0.02 1.27 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.09 1.12 7.40 -2.38 -0.02 1.11 16 41 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 Total: -1.00 -66.23 359.15 -1.99 -68.21 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.29 Total: 22.19 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 4.45 Total: -27.81 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -6.76 Total: -97.46 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.86 Total: -11.91 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -66.23 -1.99 -68.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.037 kcal (2) G-P(sol) polarization free energy of solvation -66.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds