Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 120.00242 * 2 1 4 4 N 1.34779 * 120.00046 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63431 * 174.54953 * 4 2 1 6 6 C 1.53184 * 108.77529 * 126.37233 * 5 4 2 7 7 C 1.53044 * 109.31714 * 54.63747 * 6 5 4 8 8 C 1.53042 * 109.53208 * 298.63755 * 7 6 5 9 9 H 1.08997 * 109.49553 * 301.37383 * 8 7 6 10 10 C 1.53006 * 109.49326 * 181.31209 * 8 7 6 11 11 N 1.46902 * 109.47161 * 174.99445 * 10 8 7 12 12 C 1.46897 * 111.00027 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47243 * 325.00572 * 12 11 10 14 14 C 1.52998 * 109.47171 * 85.00325 * 12 11 10 15 15 C 1.53002 * 109.47282 * 205.00170 * 12 11 10 16 16 C 1.53005 * 109.46557 * 65.00358 * 15 12 11 17 17 C 1.50701 * 109.46735 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99793 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00026 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00168 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46749 * 270.00078 * 21 19 17 23 23 H 1.48503 * 109.46914 * 29.99336 * 21 19 17 24 24 H 1.48497 * 109.47505 * 149.99476 * 21 19 17 25 25 C 1.46929 * 120.63017 * 354.53089 * 4 2 1 26 26 H 1.09000 * 109.47065 * 274.66856 * 1 2 3 27 27 H 1.08999 * 109.47021 * 34.66346 * 1 2 3 28 28 H 1.08999 * 109.47226 * 154.66617 * 1 2 3 29 29 H 1.09001 * 109.58417 * 6.58224 * 5 4 2 30 30 H 1.09000 * 109.70147 * 246.23483 * 5 4 2 31 31 H 1.09003 * 109.50033 * 294.68429 * 6 5 4 32 32 H 1.09002 * 109.49584 * 174.59231 * 6 5 4 33 33 H 1.08996 * 109.46188 * 178.61468 * 7 6 5 34 34 H 1.09000 * 109.45733 * 58.65217 * 7 6 5 35 35 H 1.09004 * 109.46703 * 54.99966 * 10 8 7 36 36 H 1.09000 * 109.47336 * 295.00092 * 10 8 7 37 37 H 1.00900 * 110.99611 * 56.05038 * 11 10 8 38 38 H 1.09003 * 109.47103 * 300.00410 * 14 12 11 39 39 H 1.09002 * 109.47091 * 59.99544 * 14 12 11 40 40 H 1.08999 * 109.47304 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.47230 * 305.00461 * 15 12 11 42 42 H 1.08999 * 109.47177 * 184.99669 * 15 12 11 43 43 H 1.08995 * 109.47267 * 60.00126 * 16 15 12 44 44 H 1.08999 * 109.46814 * 299.99533 * 16 15 12 45 45 H 0.97001 * 120.00181 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.58680 * 113.83619 * 25 4 2 47 47 H 1.08998 * 109.58647 * 353.41785 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6451 -1.1864 -0.1196 6 6 4.2247 -1.9959 1.0446 7 6 3.5779 -3.3827 1.0685 8 6 2.0693 -3.2401 1.2831 9 1 1.8832 -2.7150 2.2199 10 6 1.4281 -4.6282 1.3395 11 7 0.0016 -4.4958 1.6644 12 6 -0.6484 -5.8116 1.7266 13 1 -0.2040 -6.4720 0.9820 14 6 -0.4540 -6.4111 3.1208 15 6 -2.1438 -5.6557 1.4426 16 6 -2.3420 -5.1740 0.0040 17 6 -3.8148 -5.0199 -0.2756 18 1 -4.5371 -5.2436 0.4955 19 6 -4.2401 -4.5933 -1.5158 20 7 -5.5254 -4.4592 -1.7600 21 14 -2.9908 -4.2071 -2.8498 22 1 -2.6032 -2.7760 -2.7655 23 1 -1.7878 -5.0574 -2.6625 24 1 -3.5880 -4.4807 -4.1816 25 6 1.4652 -2.4447 0.1216 26 1 -0.3633 0.0836 1.0243 27 1 -0.3633 0.8453 -0.5845 28 1 -0.3633 -0.9288 -0.4397 29 1 4.0281 -0.1666 -0.0821 30 1 3.9303 -1.6492 -1.0643 31 1 4.0182 -1.4820 1.9835 32 1 5.3021 -2.0990 0.9152 33 1 4.0064 -3.9693 1.8810 34 1 3.7637 -3.8864 0.1199 35 1 1.9215 -5.2253 2.1064 36 1 1.5365 -5.1181 0.3719 37 1 -0.4653 -3.8931 1.0035 38 1 0.6113 -6.5221 3.3232 39 1 -0.8983 -5.7507 3.8655 40 1 -0.9367 -7.3873 3.1671 41 1 -2.5705 -4.9271 2.1318 42 1 -2.6410 -6.6165 1.5758 43 1 -1.9153 -5.9026 -0.6852 44 1 -1.8448 -4.2132 -0.1292 45 1 -5.8247 -4.1595 -2.6326 46 1 1.5706 -3.0116 -0.8034 47 1 0.4100 -2.2553 0.3182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = -61.466939 kcal Electronic energy + Delta-G solvation = -23378.425345 eV Core-core repulsion = 20173.925824 eV Total energy + Delta-G solvation = -3204.499522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33425 -38.22142 -36.90280 -33.93416 -33.13604 -32.51991 -30.55097 -29.61318 -28.97529 -25.85120 -25.37516 -24.70284 -21.99768 -21.08123 -20.71300 -19.60128 -19.15222 -17.25306 -16.83368 -16.20629 -15.53475 -15.41910 -15.31260 -14.70035 -14.33032 -14.22430 -13.69338 -13.53114 -13.37536 -13.34341 -12.99994 -12.76922 -12.50872 -12.31120 -12.08652 -12.00092 -11.82292 -11.61689 -11.41154 -11.29120 -11.15119 -11.06686 -10.77933 -10.76842 -10.42040 -10.02289 -9.84324 -9.82609 -9.51044 -9.24561 -8.77570 -8.61029 -8.21053 -6.10305 -4.08523 2.55315 2.88691 3.21056 3.30561 3.31595 4.20980 4.37177 4.44774 4.55863 4.66906 4.75201 4.86349 5.04928 5.19506 5.21920 5.23269 5.29860 5.33736 5.42479 5.42853 5.48950 5.55300 5.60120 5.64664 5.67801 5.75643 5.77857 5.85345 5.91159 5.96641 6.05235 6.17693 6.21084 6.32660 6.37370 6.38355 6.66857 6.77317 7.18736 7.20547 7.27431 7.42949 7.63594 7.72867 8.08127 8.48287 8.95491 9.51782 11.03287 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.005457 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.995202 B = 5129.764245 C = 6592.540090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.517 3.483 3 O -0.555 6.555 4 N -0.612 5.612 5 C 0.109 3.891 6 C -0.132 4.132 7 C -0.114 4.114 8 C -0.099 4.099 9 H 0.086 0.914 10 C 0.065 3.935 11 N -0.688 5.688 12 C 0.080 3.920 13 H 0.038 0.962 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.013 4.013 17 C -0.519 4.519 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.276 1.276 23 H -0.267 1.267 24 H -0.287 1.287 25 C 0.103 3.897 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.346 0.654 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.006 0.994 45 H 0.263 0.737 46 H 0.069 0.931 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.545 1.631 5.527 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.307 3.693 3 O -0.433 6.433 4 N -0.346 5.346 5 C -0.014 4.014 6 C -0.170 4.170 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.104 0.896 10 C -0.065 4.065 11 N -0.323 5.323 12 C -0.030 4.030 13 H 0.056 0.944 14 C -0.194 4.194 15 C -0.145 4.145 16 C -0.051 4.051 17 C -0.557 4.557 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.192 1.192 24 H -0.213 1.213 25 C -0.020 4.020 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.167 0.833 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.818 2.280 6.048 19.897 hybrid contribution 0.424 -0.170 -1.801 1.858 sum 19.242 2.111 4.246 19.817 Atomic orbital electron populations 1.22011 0.91326 1.05270 1.05367 1.20899 0.90813 0.82824 0.74777 1.90675 1.70849 1.31127 1.50643 1.48142 1.07208 1.06332 1.72922 1.21577 0.79763 1.02024 0.98032 1.21888 0.99919 0.96087 0.99123 1.21545 0.94600 0.96789 1.02271 1.21545 0.94781 0.96294 0.99271 0.89594 1.21980 0.89937 0.95305 0.99320 1.60641 1.01722 1.13896 1.56004 1.21652 0.96072 0.89098 0.96150 0.94386 1.21772 1.00451 0.99949 0.97199 1.21672 0.91954 1.01635 0.99232 1.19596 0.97907 0.95063 0.92492 1.21119 0.90620 1.44966 0.99014 0.90960 1.25034 0.94973 0.95030 0.98350 1.69910 1.13811 1.47389 1.22948 0.86842 0.82161 0.79009 0.81637 1.20161 1.19228 1.21350 1.21979 0.97365 0.83985 0.98664 0.88364 0.88774 0.89577 0.89119 0.91673 0.91436 0.90783 0.91388 0.91751 0.90830 0.95231 0.83280 0.93751 0.92214 0.92875 0.91810 0.92028 0.96991 0.97558 0.92701 0.91310 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.47 36.00 0.34 -1.76 16 2 C 0.52 7.14 7.80 -10.99 -0.09 7.05 16 3 O -0.55 -9.48 16.52 5.56 0.09 -9.39 16 4 N -0.61 -7.27 2.97 -172.78 -0.51 -7.78 16 5 C 0.11 1.12 6.44 -3.71 -0.02 1.09 16 6 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 7 C -0.11 -0.96 5.17 -26.69 -0.14 -1.10 16 8 C -0.10 -1.00 2.55 -90.50 -0.23 -1.23 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.06 0.72 4.94 -3.82 -0.02 0.71 16 11 N -0.69 -9.44 6.31 -106.72 -0.67 -10.12 16 12 C 0.08 1.19 2.65 -67.71 -0.18 1.01 16 13 H 0.04 0.58 7.80 -51.93 -0.40 0.18 16 14 C -0.14 -1.75 9.41 37.16 0.35 -1.40 16 15 C -0.11 -1.97 4.74 -26.73 -0.13 -2.10 16 16 C -0.01 -0.29 3.87 -27.88 -0.11 -0.40 16 17 C -0.52 -14.21 9.66 -34.44 -0.33 -14.55 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.10 1.13 5.07 -3.71 -0.02 1.12 16 26 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.98 6.20 -51.93 -0.32 0.65 16 29 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.78 7.44 -51.93 -0.39 0.40 16 36 H 0.03 0.34 8.05 -51.93 -0.42 -0.08 16 37 H 0.35 5.10 4.86 -39.29 -0.19 4.91 16 38 H 0.04 0.51 7.45 -51.93 -0.39 0.13 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 44 H 0.01 0.13 5.85 -51.93 -0.30 -0.17 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.09 4.44 -51.93 -0.23 0.86 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -31.23 359.74 -8.86 -40.09 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.46 Total: 3.11 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.83 Total: -11.03 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.41 Total: -44.32 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.23 -8.86 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.372 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds