Wall clock time and date at job start Tue Mar 31 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 120.00397 * 2 1 4 4 N 1.34778 * 119.99581 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63336 * 0.02562 * 4 2 1 6 6 C 1.53191 * 108.89109 * 233.68039 * 5 4 2 7 7 C 1.53035 * 109.31327 * 305.29292 * 6 5 4 8 8 C 1.53038 * 109.54175 * 61.36680 * 7 6 5 9 9 H 1.09002 * 109.49557 * 58.58503 * 8 7 6 10 10 C 1.53001 * 109.50015 * 178.65118 * 8 7 6 11 11 N 1.46898 * 109.46919 * 185.00137 * 10 8 7 12 12 C 1.46906 * 110.99925 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.46566 * 325.00211 * 12 11 10 14 14 C 1.52997 * 109.47263 * 84.99563 * 12 11 10 15 15 C 1.53000 * 109.47136 * 204.99878 * 12 11 10 16 16 C 1.52998 * 109.46936 * 64.99730 * 15 12 11 17 17 C 1.50702 * 109.46945 * 179.97438 * 16 15 12 18 18 H 1.08005 * 119.99839 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00171 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00235 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00084 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46791 * 89.99925 * 21 19 17 23 23 H 1.48498 * 109.47474 * 209.99797 * 21 19 17 24 24 H 1.48501 * 109.46919 * 330.00526 * 21 19 17 25 25 C 1.47207 * 120.81118 * 180.14557 * 4 2 1 26 26 H 1.08991 * 109.47287 * 270.00064 * 1 2 3 27 27 H 1.09004 * 109.46489 * 29.99888 * 1 2 3 28 28 H 1.09000 * 109.47065 * 149.99948 * 1 2 3 29 29 H 1.09002 * 109.58861 * 113.82042 * 5 4 2 30 30 H 1.08996 * 109.58519 * 353.53933 * 5 4 2 31 31 H 1.09003 * 109.49975 * 65.24379 * 6 5 4 32 32 H 1.09000 * 109.49553 * 185.30642 * 6 5 4 33 33 H 1.09003 * 109.46332 * 181.39145 * 7 6 5 34 34 H 1.09004 * 109.45942 * 301.34050 * 7 6 5 35 35 H 1.08995 * 109.47138 * 305.00001 * 10 8 7 36 36 H 1.08996 * 109.47161 * 64.99979 * 10 8 7 37 37 H 1.00895 * 111.00330 * 56.04334 * 11 10 8 38 38 H 1.09000 * 109.47185 * 300.00227 * 14 12 11 39 39 H 1.09004 * 109.47173 * 60.00123 * 14 12 11 40 40 H 1.08992 * 109.47412 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.46929 * 185.00143 * 15 12 11 42 42 H 1.09002 * 109.46773 * 304.99571 * 15 12 11 43 43 H 1.08997 * 109.47648 * 299.99972 * 16 15 12 44 44 H 1.09002 * 109.47519 * 60.00298 * 16 15 12 45 45 H 0.97003 * 120.00160 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.53610 * 6.53286 * 25 4 2 47 47 H 1.09002 * 109.68003 * 246.22753 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4603 -2.4477 0.0005 6 6 1.9647 -3.3007 1.1687 7 6 3.4858 -3.4389 1.0747 8 6 4.1326 -2.0554 1.1724 9 1 3.8481 -1.5866 2.1144 10 6 5.6548 -2.1978 1.1121 11 7 6.2782 -0.8849 1.3257 12 6 7.7431 -0.9830 1.2738 13 1 8.0586 -1.9358 1.6989 14 6 8.2089 -0.8944 -0.1808 15 6 8.3598 0.1635 2.0776 16 6 7.9955 0.0042 3.5550 17 6 8.6035 1.1331 4.3468 18 1 9.1906 1.8889 3.8462 19 6 8.4093 1.2018 5.7101 20 7 8.9395 2.1872 6.4010 21 14 7.3933 -0.1050 6.5758 22 1 8.2797 -1.2153 7.0082 23 1 6.7299 0.4901 7.7637 24 1 6.3627 -0.6287 5.6437 25 6 3.6528 -1.1882 0.0037 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8901 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6428 -2.9698 -0.9387 30 1 0.3918 -2.2656 0.1156 31 1 1.7006 -2.8201 2.1108 32 1 1.5055 -4.2882 1.1229 33 1 3.8447 -4.0660 1.8909 34 1 3.7506 -3.8972 0.1217 35 1 5.9862 -2.8879 1.8879 36 1 5.9452 -2.5832 0.1347 37 1 5.9734 -0.4773 2.1969 38 1 7.7695 -1.7112 -0.7535 39 1 7.8933 0.0583 -0.6061 40 1 9.2958 -0.9667 -0.2194 41 1 9.4439 0.1431 1.9664 42 1 7.9745 1.1141 1.7088 43 1 6.9114 0.0245 3.6662 44 1 8.3808 -0.9464 3.9238 45 1 8.8026 2.2357 7.3601 46 1 4.0315 -0.1731 0.1223 47 1 4.0160 -1.6063 -0.9351 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:44 Heat of formation + Delta-G solvation = -59.939573 kcal Electronic energy + Delta-G solvation = -23014.646088 eV Core-core repulsion = 19810.212798 eV Total energy + Delta-G solvation = -3204.433290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28476 -38.09181 -36.91000 -34.16327 -32.90930 -32.07557 -30.77476 -29.85423 -28.91737 -25.64180 -25.29139 -24.61364 -22.15903 -21.01272 -20.63821 -19.49602 -19.11801 -17.24287 -16.77847 -16.19128 -15.64938 -15.37369 -15.02146 -14.80228 -14.31819 -14.14431 -13.84707 -13.46522 -13.41100 -13.13180 -12.92558 -12.61569 -12.47510 -12.46407 -12.20522 -12.14488 -11.68293 -11.57438 -11.42176 -11.26900 -11.10096 -10.98274 -10.70924 -10.62725 -10.40182 -9.93966 -9.83893 -9.73587 -9.41769 -9.15778 -8.76373 -8.52807 -8.06682 -6.02636 -4.00165 2.54601 2.88555 3.29456 3.36967 3.39188 4.25350 4.42425 4.45291 4.51461 4.61058 4.76632 4.84887 4.95051 5.05828 5.08541 5.20260 5.30595 5.33246 5.39217 5.42485 5.52007 5.55646 5.63955 5.64726 5.69086 5.75896 5.83592 5.84488 5.92399 6.10965 6.20083 6.21715 6.27754 6.40894 6.43930 6.46556 6.76450 6.88292 7.29534 7.30152 7.32058 7.54352 7.77079 7.82311 8.10015 8.56539 9.03293 9.59900 11.11072 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.004110 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.725823 B = 6810.207460 C = 7233.523649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.540 6.540 4 N -0.616 5.616 5 C 0.104 3.896 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.100 4.100 9 H 0.074 0.926 10 C 0.066 3.934 11 N -0.687 5.687 12 C 0.081 3.919 13 H 0.036 0.964 14 C -0.135 4.135 15 C -0.106 4.106 16 C -0.014 4.014 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.268 1.268 25 C 0.125 3.875 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.350 0.650 38 H 0.043 0.957 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.013 0.987 44 H 0.007 0.993 45 H 0.262 0.738 46 H 0.106 0.894 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.208 -14.680 -14.713 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.297 3.703 3 O -0.416 6.416 4 N -0.351 5.351 5 C -0.019 4.019 6 C -0.173 4.173 7 C -0.153 4.153 8 C -0.120 4.120 9 H 0.092 0.908 10 C -0.064 4.064 11 N -0.322 5.322 12 C -0.028 4.028 13 H 0.055 0.945 14 C -0.193 4.193 15 C -0.144 4.144 16 C -0.052 4.052 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.708 3.292 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.193 1.193 25 C 0.003 3.997 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.031 0.969 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.124 0.876 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.928 -13.825 -15.193 26.618 hybrid contribution -0.320 -1.257 1.570 2.037 sum -17.248 -15.082 -13.623 26.656 Atomic orbital electron populations 1.21971 0.92231 1.04590 1.04689 1.20784 0.90484 0.83223 0.75809 1.90760 1.70550 1.30930 1.49382 1.48311 1.07529 1.05692 1.73550 1.21794 0.96829 0.84440 0.98861 1.21908 0.96533 0.99974 0.98866 1.21549 0.94636 0.96779 1.02335 1.21537 0.95098 0.95670 0.99683 0.90766 1.21941 0.92391 0.91336 1.00716 1.60581 1.07253 1.21850 1.42472 1.21633 0.86938 0.98583 0.95696 0.94549 1.21772 0.99765 1.01667 0.96135 1.21658 0.99743 0.96839 0.96175 1.19602 0.96139 0.97026 0.92404 1.21139 1.32482 1.09621 0.92314 0.90967 1.25037 0.95406 0.95487 0.97560 1.69917 1.45277 1.31657 1.07401 0.86774 0.81011 0.82161 0.79252 1.20446 1.21379 1.19258 1.21648 0.77694 1.03163 0.97199 0.88945 0.89009 0.90128 0.91407 0.89589 0.91378 0.90676 0.91559 0.91658 0.95178 0.91228 0.82883 0.93825 0.92177 0.92947 0.92155 0.91768 0.96887 0.97507 0.92778 0.87577 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.46 36.01 0.34 -0.98 16 2 C 0.51 6.32 7.81 -10.98 -0.09 6.24 16 3 O -0.54 -9.50 16.53 5.56 0.09 -9.41 16 4 N -0.62 -6.61 2.98 -172.52 -0.51 -7.12 16 5 C 0.10 0.71 6.21 -3.71 -0.02 0.69 16 6 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 7 C -0.11 -0.98 5.17 -26.69 -0.14 -1.12 16 8 C -0.10 -1.15 2.48 -90.48 -0.22 -1.37 16 9 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 10 C 0.07 0.85 4.88 -3.82 -0.02 0.83 16 11 N -0.69 -10.88 5.88 -106.73 -0.63 -11.51 16 12 C 0.08 1.33 2.65 -67.71 -0.18 1.16 16 13 H 0.04 0.61 7.80 -51.93 -0.40 0.20 16 14 C -0.14 -1.92 9.41 37.16 0.35 -1.57 16 15 C -0.11 -2.15 4.74 -26.73 -0.13 -2.27 16 16 C -0.01 -0.34 3.87 -27.88 -0.11 -0.45 16 17 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 18 H 0.07 2.26 7.99 -52.48 -0.42 1.85 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -28.42 13.96 55.43 0.77 -27.64 16 21 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 25 C 0.12 1.53 5.55 -3.54 -0.02 1.51 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.39 6.19 -51.93 -0.32 0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.41 5.52 -51.93 -0.29 0.12 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.07 0.82 7.43 -51.93 -0.39 0.43 16 37 H 0.35 6.25 6.47 -39.29 -0.25 5.99 16 38 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.01 0.31 5.48 -51.93 -0.28 0.03 16 44 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.11 1.67 6.81 -51.93 -0.35 1.32 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -33.84 361.95 -8.89 -42.73 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.57 Total: 2.02 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.83 Total: -11.98 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.37 Total: -46.27 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.84 -8.89 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.211 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds