Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00015 * 2 1 4 4 N 1.34779 * 119.99964 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62909 * 354.36997 * 4 2 1 6 6 C 1.53198 * 108.77390 * 233.62925 * 5 4 2 7 7 C 1.53041 * 109.33709 * 305.38055 * 6 5 4 8 8 C 1.53037 * 109.53469 * 61.31982 * 7 6 5 9 9 H 1.08997 * 109.50096 * 58.65059 * 8 7 6 10 10 C 1.53008 * 109.49311 * 178.71464 * 8 7 6 11 11 N 1.46899 * 109.46745 * 184.93274 * 10 8 7 12 12 C 1.46906 * 110.99809 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.46539 * 35.00651 * 12 11 10 14 14 C 1.52991 * 109.47625 * 275.00180 * 12 11 10 15 15 C 1.53001 * 109.47146 * 154.99914 * 12 11 10 16 16 C 1.53003 * 109.47040 * 295.00676 * 15 12 11 17 17 C 1.50705 * 109.46729 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99582 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00575 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47109 * 60.00070 * 21 19 17 23 23 H 1.48496 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47346 * 299.99827 * 21 19 17 25 25 C 1.46920 * 120.62737 * 174.39270 * 4 2 1 26 26 H 1.09004 * 109.47070 * 184.87803 * 1 2 3 27 27 H 1.09007 * 109.47180 * 304.87611 * 1 2 3 28 28 H 1.08996 * 109.47461 * 64.87997 * 1 2 3 29 29 H 1.08997 * 109.59244 * 353.41704 * 5 4 2 30 30 H 1.09002 * 109.58586 * 113.70229 * 5 4 2 31 31 H 1.08991 * 109.49874 * 65.32219 * 6 5 4 32 32 H 1.09001 * 109.49575 * 185.38141 * 6 5 4 33 33 H 1.08995 * 109.43325 * 301.31289 * 7 6 5 34 34 H 1.08997 * 109.48114 * 181.35068 * 7 6 5 35 35 H 1.08995 * 109.47386 * 64.93509 * 10 8 7 36 36 H 1.08996 * 109.47036 * 304.92884 * 10 8 7 37 37 H 1.00891 * 111.00384 * 303.95394 * 11 10 8 38 38 H 1.08995 * 109.47438 * 300.00393 * 14 12 11 39 39 H 1.09010 * 109.47114 * 59.99727 * 14 12 11 40 40 H 1.09001 * 109.47290 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.46903 * 55.00308 * 15 12 11 42 42 H 1.08996 * 109.47408 * 175.00093 * 15 12 11 43 43 H 1.09001 * 109.46972 * 299.99590 * 16 15 12 44 44 H 1.09003 * 109.47366 * 60.00142 * 16 15 12 45 45 H 0.96997 * 120.00572 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58879 * 6.57839 * 25 4 2 47 47 H 1.09001 * 109.69936 * 246.22593 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4445 0.1251 6 6 2.0725 -3.2382 1.2864 7 6 3.5807 -3.3811 1.0691 8 6 4.2272 -1.9943 1.0410 9 1 4.0235 -1.4788 1.9795 10 6 5.7391 -2.1394 0.8557 11 7 6.3727 -0.8173 0.9469 12 6 7.8281 -0.9179 0.7740 13 1 8.0549 -1.7055 0.0555 14 6 8.4796 -1.2502 2.1178 15 6 8.3738 0.4152 0.2584 16 6 7.8176 0.6870 -1.1408 17 6 8.3547 2.0005 -1.6484 18 1 9.0252 2.5833 -1.0343 19 6 7.9900 2.4581 -2.8968 20 7 7.1738 1.7483 -3.6449 21 14 8.6551 4.0865 -3.5256 22 1 10.1377 4.0259 -3.5847 23 1 8.1164 4.3497 -4.8842 24 1 8.2405 5.1781 -2.6082 25 6 3.6448 -1.1864 -0.1230 26 1 -0.3633 -1.0240 0.0874 27 1 -0.3634 0.5877 0.8431 28 1 -0.3634 0.4362 -0.9304 29 1 0.4108 -2.2548 0.3240 30 1 1.5667 -3.0117 -0.8002 31 1 1.8885 -2.7114 2.2226 32 1 1.6154 -4.2268 1.3294 33 1 3.7642 -3.8866 0.1211 34 1 4.0112 -3.9661 1.8817 35 1 5.9452 -2.5744 -0.1221 36 1 6.1398 -2.7888 1.6341 37 1 5.9721 -0.1774 0.2776 38 1 8.2527 -0.4626 2.8362 39 1 8.0908 -2.2000 2.4851 40 1 9.5594 -1.3253 1.9893 41 1 8.0706 1.2168 0.9319 42 1 9.4619 0.3698 0.2144 43 1 8.1208 -0.1145 -1.8143 44 1 6.7294 0.7326 -1.0968 45 1 6.9175 2.0701 -4.5233 46 1 4.0279 -0.1666 -0.0879 47 1 3.9277 -1.6507 -1.0677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -58.652971 kcal Electronic energy + Delta-G solvation = -23163.183730 eV Core-core repulsion = 19958.806231 eV Total energy + Delta-G solvation = -3204.377499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19263 -37.96103 -36.74544 -34.04320 -32.88517 -32.01009 -30.55099 -29.49422 -28.67584 -25.45783 -25.21698 -24.52027 -22.07820 -21.20890 -20.43654 -19.35818 -19.01213 -17.19435 -16.38891 -16.03312 -15.44712 -15.20024 -15.04727 -14.53071 -14.48252 -14.22629 -13.41287 -13.36545 -13.29348 -13.08553 -12.89813 -12.53282 -12.45753 -12.17509 -12.07530 -11.71412 -11.56660 -11.33068 -11.23549 -11.07435 -10.88763 -10.87593 -10.66534 -10.51539 -10.42556 -10.07544 -9.70593 -9.65571 -9.21734 -8.97837 -8.60885 -8.29404 -7.92432 -5.94444 -3.96230 2.70395 3.00973 3.38546 3.42401 3.45391 4.38378 4.51686 4.52733 4.58129 4.70803 4.91088 4.94244 5.03093 5.19868 5.27786 5.30948 5.41677 5.45622 5.53391 5.56476 5.63033 5.65602 5.74293 5.76377 5.82664 5.87983 5.96138 5.96514 6.04952 6.20289 6.25106 6.37447 6.42133 6.53469 6.56345 6.61104 6.96660 7.14285 7.43834 7.56675 7.67575 7.85183 7.95564 8.05027 8.25692 8.48441 9.09761 9.67731 11.16871 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.004707 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.818632 B = 5947.532177 C = 7528.468808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.507 3.493 3 O -0.535 6.535 4 N -0.613 5.613 5 C 0.101 3.899 6 C -0.133 4.133 7 C -0.114 4.114 8 C -0.098 4.098 9 H 0.082 0.918 10 C 0.067 3.933 11 N -0.689 5.689 12 C 0.082 3.918 13 H 0.037 0.963 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.021 3.979 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.111 3.889 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.353 0.647 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.011 0.989 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.100 0.900 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.109 -13.739 9.800 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.295 3.705 3 O -0.411 6.411 4 N -0.347 5.347 5 C -0.022 4.022 6 C -0.171 4.171 7 C -0.152 4.152 8 C -0.117 4.117 9 H 0.100 0.900 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.027 4.027 13 H 0.055 0.945 14 C -0.193 4.193 15 C -0.153 4.153 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.011 4.011 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.175 0.825 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.119 0.881 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.848 -13.150 10.291 21.069 hybrid contribution 0.365 0.565 -1.453 1.601 sum -12.483 -12.585 8.838 19.807 Atomic orbital electron populations 1.22032 0.92277 1.04190 1.05239 1.20793 0.90490 0.83297 0.75905 1.90792 1.70404 1.30882 1.49043 1.48136 1.07562 1.05916 1.73112 1.21875 0.96680 0.84705 0.98893 1.21901 0.96406 1.00170 0.98663 1.21542 0.94674 0.96815 1.02212 1.21521 0.94710 0.95783 0.99706 0.89995 1.21927 0.92479 0.92261 0.99654 1.60625 1.04222 1.09476 1.58107 1.21594 0.87254 0.98583 0.95303 0.94525 1.21781 0.99102 1.00662 0.97760 1.21835 0.99604 0.94209 0.99658 1.19115 0.95951 0.96584 0.89920 1.21189 1.28254 1.05319 1.01015 0.92748 1.25007 0.95128 0.97230 0.96950 1.69940 1.34550 1.38223 1.10744 0.86670 0.79142 0.84367 0.77911 1.20317 1.21336 1.20173 1.21729 0.78643 1.03142 0.97617 0.90120 0.88988 0.88777 0.89280 0.91352 0.91433 0.90759 0.91729 0.91541 0.95318 0.91285 0.82455 0.92408 0.93901 0.93102 0.92459 0.92773 0.97055 0.96692 0.93032 0.88137 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 10.11 36.01 0.36 -1.24 16 2 C 0.51 7.31 7.79 -10.98 -0.09 7.22 16 3 O -0.54 -10.73 16.52 5.56 0.09 -10.64 16 4 N -0.61 -7.77 2.97 -172.77 -0.51 -8.29 16 5 C 0.10 0.83 6.31 -3.71 -0.02 0.81 16 6 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 7 C -0.11 -1.07 5.17 -26.69 -0.14 -1.20 16 8 C -0.10 -1.23 2.55 -90.50 -0.23 -1.46 16 9 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 10 C 0.07 0.95 4.95 -3.82 -0.02 0.93 16 11 N -0.69 -11.96 6.31 -106.73 -0.67 -12.64 16 12 C 0.08 1.47 2.65 -67.71 -0.18 1.29 16 13 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 14 C -0.14 -2.04 9.41 37.15 0.35 -1.69 16 15 C -0.12 -2.47 4.74 -26.73 -0.13 -2.59 16 16 C 0.02 0.56 4.80 -27.88 -0.13 0.43 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 21 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.11 1.64 5.36 -3.71 -0.02 1.62 16 26 H 0.08 0.48 5.14 -51.93 -0.27 0.21 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.52 5.14 -51.93 -0.27 0.25 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 36 H 0.07 0.90 7.43 -51.93 -0.39 0.51 16 37 H 0.35 7.01 4.86 -39.30 -0.19 6.82 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.04 0.58 7.45 -51.92 -0.39 0.19 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.01 0.41 6.43 -51.93 -0.33 0.08 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 46 H 0.10 1.88 5.81 -51.93 -0.30 1.58 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -33.90 362.58 -9.15 -43.05 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.42 Total: 3.41 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.82 Total: -10.93 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.45 Total: -47.78 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.90 -9.15 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.605 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds