Wall clock time and date at job start Tue Mar 31 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21280 * 120.00015 * 2 1 4 4 N 1.34779 * 119.99964 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62909 * 354.36997 * 4 2 1 6 6 C 1.53198 * 108.77390 * 233.62925 * 5 4 2 7 7 C 1.53041 * 109.33709 * 305.38055 * 6 5 4 8 8 C 1.53037 * 109.53469 * 61.31982 * 7 6 5 9 9 H 1.08997 * 109.50096 * 58.65059 * 8 7 6 10 10 C 1.53008 * 109.49311 * 178.71464 * 8 7 6 11 11 N 1.46899 * 109.46745 * 184.93274 * 10 8 7 12 12 C 1.46906 * 110.99809 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.46539 * 35.00651 * 12 11 10 14 14 C 1.52991 * 109.47625 * 275.00180 * 12 11 10 15 15 C 1.53001 * 109.47146 * 154.99914 * 12 11 10 16 16 C 1.53003 * 109.47040 * 295.00676 * 15 12 11 17 17 C 1.50705 * 109.46729 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00486 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99582 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00575 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99636 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47109 * 60.00070 * 21 19 17 23 23 H 1.48496 * 109.47021 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47346 * 299.99827 * 21 19 17 25 25 C 1.46920 * 120.62737 * 174.39270 * 4 2 1 26 26 H 1.09004 * 109.47070 * 184.87803 * 1 2 3 27 27 H 1.09007 * 109.47180 * 304.87611 * 1 2 3 28 28 H 1.08996 * 109.47461 * 64.87997 * 1 2 3 29 29 H 1.08997 * 109.59244 * 353.41704 * 5 4 2 30 30 H 1.09002 * 109.58586 * 113.70229 * 5 4 2 31 31 H 1.08991 * 109.49874 * 65.32219 * 6 5 4 32 32 H 1.09001 * 109.49575 * 185.38141 * 6 5 4 33 33 H 1.08995 * 109.43325 * 301.31289 * 7 6 5 34 34 H 1.08997 * 109.48114 * 181.35068 * 7 6 5 35 35 H 1.08995 * 109.47386 * 64.93509 * 10 8 7 36 36 H 1.08996 * 109.47036 * 304.92884 * 10 8 7 37 37 H 1.00891 * 111.00384 * 303.95394 * 11 10 8 38 38 H 1.08995 * 109.47438 * 300.00393 * 14 12 11 39 39 H 1.09010 * 109.47114 * 59.99727 * 14 12 11 40 40 H 1.09001 * 109.47290 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.46903 * 55.00308 * 15 12 11 42 42 H 1.08996 * 109.47408 * 175.00093 * 15 12 11 43 43 H 1.09001 * 109.46972 * 299.99590 * 16 15 12 44 44 H 1.09003 * 109.47366 * 60.00142 * 16 15 12 45 45 H 0.96997 * 120.00572 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58879 * 6.57839 * 25 4 2 47 47 H 1.09001 * 109.69936 * 246.22593 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4656 -2.4445 0.1251 6 6 2.0725 -3.2382 1.2864 7 6 3.5807 -3.3811 1.0691 8 6 4.2272 -1.9943 1.0410 9 1 4.0235 -1.4788 1.9795 10 6 5.7391 -2.1394 0.8557 11 7 6.3727 -0.8173 0.9469 12 6 7.8281 -0.9179 0.7740 13 1 8.0549 -1.7055 0.0555 14 6 8.4796 -1.2502 2.1178 15 6 8.3738 0.4152 0.2584 16 6 7.8176 0.6870 -1.1408 17 6 8.3547 2.0005 -1.6484 18 1 9.0252 2.5833 -1.0343 19 6 7.9900 2.4581 -2.8968 20 7 7.1738 1.7483 -3.6449 21 14 8.6551 4.0865 -3.5256 22 1 10.1377 4.0259 -3.5847 23 1 8.1164 4.3497 -4.8842 24 1 8.2405 5.1781 -2.6082 25 6 3.6448 -1.1864 -0.1230 26 1 -0.3633 -1.0240 0.0874 27 1 -0.3634 0.5877 0.8431 28 1 -0.3634 0.4362 -0.9304 29 1 0.4108 -2.2548 0.3240 30 1 1.5667 -3.0117 -0.8002 31 1 1.8885 -2.7114 2.2226 32 1 1.6154 -4.2268 1.3294 33 1 3.7642 -3.8866 0.1211 34 1 4.0112 -3.9661 1.8817 35 1 5.9452 -2.5744 -0.1221 36 1 6.1398 -2.7888 1.6341 37 1 5.9721 -0.1774 0.2776 38 1 8.2527 -0.4626 2.8362 39 1 8.0908 -2.2000 2.4851 40 1 9.5594 -1.3253 1.9893 41 1 8.0706 1.2168 0.9319 42 1 9.4619 0.3698 0.2144 43 1 8.1208 -0.1145 -1.8143 44 1 6.7294 0.7326 -1.0968 45 1 6.9175 2.0701 -4.5233 46 1 4.0279 -0.1666 -0.0879 47 1 3.9277 -1.6507 -1.0677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:46 Heat of formation + Delta-G solvation = -81.560852 kcal Electronic energy + Delta-G solvation = -23164.177090 eV Core-core repulsion = 19958.806231 eV Total energy + Delta-G solvation = -3205.370859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.25009 -39.21933 -38.06510 -35.58938 -34.64525 -33.09850 -31.93160 -30.88545 -29.84368 -27.18974 -26.16725 -25.92208 -23.42709 -22.68846 -21.55640 -20.89849 -19.97907 -18.58274 -18.18905 -17.21003 -16.63867 -16.55198 -16.48379 -16.30670 -15.55852 -15.22562 -14.76181 -14.57236 -14.36761 -14.30008 -14.06392 -13.98355 -13.94645 -13.31927 -13.17835 -13.11888 -13.03835 -12.84096 -12.74717 -12.42215 -12.27268 -12.12669 -11.97381 -11.82945 -11.59603 -11.58172 -11.42082 -11.28613 -10.96201 -10.78328 -10.58013 -9.66959 -9.33753 -8.23598 -6.34594 1.34998 1.39308 1.46673 1.59757 2.03382 2.37673 3.09266 3.22286 3.59676 3.79535 3.82284 3.95764 4.05515 4.10343 4.19012 4.29589 4.34009 4.43858 4.47019 4.57504 4.61437 4.66844 4.71277 4.75713 4.77219 4.83150 4.90756 4.96588 4.99772 5.04825 5.07640 5.13888 5.16213 5.19667 5.27489 5.42230 5.46834 5.49765 5.52614 5.65976 5.79661 6.20701 6.24896 6.36480 6.44634 6.81346 7.17358 7.34538 8.87796 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.004707 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.818632 B = 5947.532177 C = 7528.468808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.491 3.509 3 O -0.609 6.609 4 N -0.610 5.610 5 C 0.092 3.908 6 C -0.128 4.128 7 C -0.110 4.110 8 C -0.085 4.085 9 H 0.068 0.932 10 C 0.067 3.933 11 N -0.695 5.695 12 C 0.085 3.915 13 H 0.031 0.969 14 C -0.125 4.125 15 C -0.103 4.103 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.058 0.942 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.112 3.888 26 H 0.119 0.881 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.021 0.979 36 H 0.091 0.909 37 H 0.333 0.667 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.060 0.940 43 H -0.014 1.014 44 H -0.010 1.010 45 H 0.263 0.737 46 H 0.049 0.951 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -15.560 10.978 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.282 3.718 3 O -0.491 6.491 4 N -0.343 5.343 5 C -0.028 4.028 6 C -0.165 4.165 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.086 0.914 10 C -0.062 4.062 11 N -0.329 5.329 12 C -0.024 4.024 13 H 0.049 0.951 14 C -0.183 4.183 15 C -0.141 4.141 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.207 1.207 24 H -0.195 1.195 25 C -0.011 4.011 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.004 0.996 44 H 0.008 0.992 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.823 -15.043 11.496 23.442 hybrid contribution 0.653 1.081 -1.849 2.239 sum -13.170 -13.962 9.647 21.481 Atomic orbital electron populations 1.22050 0.87489 1.06939 1.05959 1.21923 0.92818 0.82580 0.74448 1.90755 1.72244 1.33538 1.52556 1.48335 1.06688 1.07557 1.71736 1.22297 0.97968 0.82534 1.00025 1.21911 0.94914 1.01782 0.97942 1.21553 0.95992 0.94127 1.03173 1.21414 0.93761 0.97676 0.97587 0.91351 1.22059 0.93519 0.90729 0.99928 1.60752 1.04020 1.10923 1.57172 1.21564 0.87786 0.96078 0.97002 0.95098 1.21690 0.99662 1.01552 0.95384 1.21662 0.99782 0.96229 0.96435 1.18967 0.94447 0.94937 0.92383 1.21666 1.28579 1.06516 1.01632 0.92341 1.25981 0.95257 1.01311 0.97189 1.70084 1.35721 1.40232 1.11144 0.85524 0.79098 0.79259 0.77342 1.18727 1.20678 1.19505 1.21491 0.80764 1.00504 0.98380 0.86306 0.88035 0.88134 0.86038 0.90188 0.91713 0.87266 0.91312 0.89829 0.96081 0.89089 0.84714 0.92708 0.91763 0.91780 0.93222 0.92100 0.99577 0.99220 0.92876 0.93222 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.11 71.24 0.72 -1.97 16 2 C 0.49 14.64 7.79 87.66 0.68 15.33 16 3 O -0.61 -26.55 16.52 -3.03 -0.05 -26.60 16 4 N -0.61 -15.63 2.97 -818.92 -2.43 -18.07 16 5 C 0.09 1.26 6.31 86.37 0.54 1.81 16 6 C -0.13 -1.49 6.08 30.67 0.19 -1.31 16 7 C -0.11 -1.80 5.17 30.62 0.16 -1.64 16 8 C -0.08 -2.16 2.55 -10.71 -0.03 -2.18 16 9 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 10 C 0.07 1.92 4.95 86.31 0.43 2.34 16 11 N -0.70 -25.30 6.31 -491.57 -3.10 -28.40 16 12 C 0.09 3.10 2.65 44.91 0.12 3.22 16 13 H 0.03 1.16 7.80 -2.39 -0.02 1.14 16 14 C -0.13 -3.58 9.41 71.98 0.68 -2.90 16 15 C -0.10 -4.58 4.74 30.60 0.15 -4.43 16 16 C 0.03 1.67 4.80 29.85 0.14 1.81 16 17 C -0.55 -33.03 9.11 25.60 0.23 -32.79 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.00 0.03 5.46 84.66 0.46 0.49 16 20 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16 21 Si 0.96 46.82 29.54 68.60 2.03 48.85 16 22 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 25 C 0.11 3.58 5.36 86.36 0.46 4.05 16 26 H 0.12 0.94 5.14 -2.39 -0.01 0.93 16 27 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 0.87 5.14 -2.39 -0.01 0.85 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 36 H 0.09 2.20 7.43 -2.39 -0.02 2.18 16 37 H 0.33 14.51 4.86 -89.70 -0.44 14.08 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.57 7.45 -2.38 -0.02 1.56 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H -0.01 -0.63 6.43 -2.39 -0.02 -0.64 16 45 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.05 2.10 5.81 -2.39 -0.01 2.09 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.16 362.58 2.16 -78.00 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.49 Total: 23.73 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.94 Total: -18.20 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -5.25 Total: -105.78 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -80.16 2.16 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.561 kcal (2) G-P(sol) polarization free energy of solvation -80.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds