Wall clock time and date at job start Tue Mar 31 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21283 * 119.99803 * 2 1 4 4 N 1.34777 * 119.99675 * 180.27875 * 2 1 3 5 5 C 1.46927 * 120.63303 * 359.72079 * 4 2 1 6 6 C 1.53193 * 108.77386 * 126.36982 * 5 4 2 7 7 C 1.53045 * 109.31211 * 54.63774 * 6 5 4 8 8 C 1.53043 * 109.53613 * 298.63732 * 7 6 5 9 9 H 1.09002 * 109.49579 * 301.37897 * 8 7 6 10 10 C 1.53004 * 109.49720 * 181.31740 * 8 7 6 11 11 N 1.46898 * 109.47092 * 174.99492 * 10 8 7 12 12 C 1.46899 * 111.00028 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.46839 * 35.00294 * 12 11 10 14 14 C 1.52997 * 109.47650 * 275.00406 * 12 11 10 15 15 C 1.52997 * 109.47025 * 154.99647 * 12 11 10 16 16 C 1.52990 * 109.47604 * 295.00455 * 15 12 11 17 17 C 1.50704 * 109.47354 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99640 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00313 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00065 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46840 * 120.00531 * 21 19 17 24 24 H 1.48501 * 109.47077 * 240.00365 * 21 19 17 25 25 C 1.46925 * 120.62614 * 179.44850 * 4 2 1 26 26 H 1.09003 * 109.47157 * 89.99448 * 1 2 3 27 27 H 1.08998 * 109.47436 * 209.99505 * 1 2 3 28 28 H 1.09000 * 109.47527 * 330.00230 * 1 2 3 29 29 H 1.08997 * 109.58480 * 246.16089 * 5 4 2 30 30 H 1.08999 * 109.58556 * 6.58745 * 5 4 2 31 31 H 1.08996 * 109.49520 * 174.58628 * 6 5 4 32 32 H 1.09000 * 109.49983 * 294.68604 * 6 5 4 33 33 H 1.09001 * 109.46023 * 58.65235 * 7 6 5 34 34 H 1.08988 * 109.46209 * 178.61366 * 7 6 5 35 35 H 1.09002 * 109.46956 * 294.99539 * 10 8 7 36 36 H 1.08999 * 109.47035 * 54.99281 * 10 8 7 37 37 H 1.00897 * 111.00306 * 56.04748 * 11 10 8 38 38 H 1.09007 * 109.46918 * 59.99779 * 14 12 11 39 39 H 1.08995 * 109.47520 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.46903 * 300.00290 * 14 12 11 41 41 H 1.09004 * 109.46947 * 55.00838 * 15 12 11 42 42 H 1.09010 * 109.47097 * 175.00174 * 15 12 11 43 43 H 1.08999 * 109.47267 * 299.99720 * 16 15 12 44 44 H 1.08997 * 109.47174 * 59.99949 * 16 15 12 45 45 H 0.96998 * 120.00703 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.59194 * 353.41299 * 25 4 2 47 47 H 1.09004 * 109.59115 * 113.83935 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0057 5 6 1.4602 -2.4477 -0.0057 6 6 1.9630 -3.2963 -1.1778 7 6 3.4849 -3.4315 -1.0886 8 6 4.1283 -2.0462 -1.1842 9 1 3.8405 -1.5755 -2.1243 10 6 5.6509 -2.1853 -1.1279 11 7 6.2709 -0.8705 -1.3397 12 6 7.7361 -0.9654 -1.2916 13 1 8.0528 -1.9164 -1.7200 14 6 8.2053 -0.8796 0.1621 15 6 8.3482 0.1844 -2.0940 16 6 7.9808 0.0282 -3.5708 17 6 8.5833 1.1612 -4.3611 18 1 9.1700 1.9169 -3.8600 19 6 8.3864 1.2324 -5.7238 20 7 7.6723 0.3120 -6.3341 21 14 9.1326 2.6372 -6.7031 22 1 9.8847 3.5335 -5.7886 23 1 10.0561 2.0896 -7.7291 24 1 8.0507 3.4050 -7.3704 25 6 3.6499 -1.1833 -0.0179 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6467 -2.9719 0.9315 30 1 0.3915 -2.2655 -0.1186 31 1 1.5067 -4.2851 -1.1331 32 1 1.6952 -2.8137 -2.1177 33 1 3.7534 -3.8917 -0.1377 34 1 3.8427 -4.0554 -1.9075 35 1 5.9446 -2.5726 -0.1522 36 1 5.9820 -2.8728 -1.9063 37 1 5.9303 -0.1979 -0.6692 38 1 7.7692 -1.6989 0.7337 39 1 9.2924 -0.9505 0.1978 40 1 7.8886 0.0713 0.5906 41 1 7.9618 1.1333 -1.7218 42 1 9.4328 0.1662 -1.9855 43 1 8.3673 -0.9206 -3.9430 44 1 6.8964 0.0464 -3.6793 45 1 7.5334 0.3622 -7.2928 46 1 4.0256 -0.1673 -0.1388 47 1 4.0187 -1.6024 0.9183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:50 Heat of formation + Delta-G solvation = -60.872316 kcal Electronic energy + Delta-G solvation = -22910.528051 eV Core-core repulsion = 19706.054314 eV Total energy + Delta-G solvation = -3204.473737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32707 -38.06758 -36.79098 -34.07673 -32.89855 -32.05373 -30.62918 -29.59259 -28.51449 -25.38192 -25.26208 -24.66364 -22.11871 -21.15924 -20.59438 -19.58475 -19.13515 -17.26022 -16.19281 -16.05513 -15.57061 -15.35947 -14.90847 -14.56997 -14.26445 -14.24744 -13.59594 -13.48147 -13.36578 -13.23231 -12.94198 -12.61529 -12.40896 -12.26927 -12.22286 -11.99890 -11.51412 -11.34946 -11.30265 -11.10057 -10.90768 -10.86926 -10.67586 -10.58252 -10.37118 -10.06647 -9.83229 -9.56487 -9.14661 -8.82778 -8.76426 -8.17893 -7.80829 -5.83172 -3.83734 2.53424 2.86943 3.40391 3.47396 3.52023 4.33072 4.42599 4.56386 4.59242 4.67503 4.84961 4.86695 4.98199 5.08962 5.10967 5.21742 5.35035 5.40543 5.49324 5.52514 5.54130 5.55602 5.60178 5.63432 5.66835 5.74204 5.85070 5.92945 5.97394 6.13224 6.16050 6.32078 6.34798 6.43600 6.49584 6.74410 6.96591 7.27554 7.38084 7.57814 7.86399 7.91168 8.08317 8.14535 8.30169 8.64115 9.25559 9.78652 11.28056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.003717 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.348094 B = 7530.950478 C = 8081.254482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.541 6.541 4 N -0.613 5.613 5 C 0.105 3.895 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.101 4.101 9 H 0.088 0.912 10 C 0.070 3.930 11 N -0.672 5.672 12 C 0.084 3.916 13 H 0.071 0.929 14 C -0.180 4.180 15 C -0.098 4.098 16 C 0.029 3.971 17 C -0.516 4.516 18 H 0.051 0.949 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.114 3.886 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.075 0.925 37 H 0.334 0.666 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.006 0.994 44 H 0.033 0.967 45 H 0.257 0.743 46 H 0.097 0.903 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 -10.461 16.000 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.298 3.702 3 O -0.418 6.418 4 N -0.347 5.347 5 C -0.018 4.018 6 C -0.174 4.174 7 C -0.152 4.152 8 C -0.121 4.121 9 H 0.106 0.894 10 C -0.060 4.060 11 N -0.303 5.303 12 C -0.025 4.025 13 H 0.089 0.911 14 C -0.239 4.239 15 C -0.137 4.137 16 C -0.008 4.008 17 C -0.555 4.555 18 H 0.069 0.931 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.008 4.008 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.399 -9.970 15.150 23.157 hybrid contribution 0.544 0.463 0.278 0.767 sum -13.855 -9.507 15.428 22.811 Atomic orbital electron populations 1.21966 0.92073 1.04581 1.04820 1.20807 0.90571 0.83164 0.75672 1.90753 1.70584 1.30953 1.49522 1.48148 1.07079 1.05891 1.73566 1.21822 0.96832 0.84238 0.98947 1.21919 0.96642 0.99954 0.98835 1.21534 0.94532 0.96863 1.02270 1.21481 0.95176 0.95589 0.99856 0.89355 1.21922 0.92387 0.92512 0.99204 1.60537 1.05946 1.07420 1.56365 1.21728 0.86708 1.00910 0.93194 0.91071 1.22539 1.01878 1.00861 0.98660 1.21627 0.97691 0.95402 0.98931 1.18994 0.97949 0.95805 0.88019 1.21405 1.31633 1.09856 0.92557 0.93072 1.24993 0.95532 0.95969 0.97967 1.69989 1.40147 1.34193 1.09243 0.86632 0.78982 0.82767 0.80168 1.19869 1.21218 1.21139 1.21605 0.78979 1.02517 0.97710 0.88793 0.90099 0.89014 0.91437 0.89485 0.90674 0.91132 0.92001 0.91163 0.95973 0.90628 0.84706 0.93828 0.92284 0.92791 0.93482 0.93603 0.97558 0.94906 0.93380 0.88507 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.46 36.01 0.34 -0.99 16 2 C 0.51 6.35 7.81 -10.98 -0.09 6.26 16 3 O -0.54 -9.46 16.51 5.55 0.09 -9.37 16 4 N -0.61 -6.61 2.98 -173.03 -0.52 -7.12 16 5 C 0.10 0.74 6.23 -3.71 -0.02 0.71 16 6 C -0.14 -1.01 6.08 -26.61 -0.16 -1.17 16 7 C -0.11 -1.04 5.17 -26.69 -0.14 -1.18 16 8 C -0.10 -1.23 2.53 -90.72 -0.23 -1.46 16 9 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 10 C 0.07 0.94 4.95 -3.82 -0.02 0.92 16 11 N -0.67 -11.19 5.70 -106.72 -0.61 -11.80 16 12 C 0.08 1.46 2.59 -67.72 -0.18 1.28 16 13 H 0.07 1.27 7.80 -51.93 -0.41 0.86 16 14 C -0.18 -2.53 9.16 37.16 0.34 -2.19 16 15 C -0.10 -2.12 4.83 -26.74 -0.13 -2.25 16 16 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 17 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -28.10 13.29 55.43 0.74 -27.36 16 21 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 16 22 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.11 1.38 5.32 -3.93 -0.02 1.36 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.39 6.20 -51.93 -0.32 0.07 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.43 5.52 -51.93 -0.29 0.14 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 8.14 -51.94 -0.42 0.23 16 35 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 36 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 37 H 0.33 5.31 6.86 -39.29 -0.27 5.04 16 38 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 43 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 44 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.10 1.44 5.81 -51.93 -0.30 1.14 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -34.93 365.79 -9.29 -44.22 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.64 Total: 0.46 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.85 Total: -12.16 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.39 Total: -46.29 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.93 -9.29 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.655 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds