Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47562 * 120.00179 * 2 1 3 5 5 O 1.21276 * 120.00094 * 266.67853 * 4 2 1 6 6 N 1.34784 * 119.99814 * 86.66709 * 4 2 1 7 7 C 1.47424 * 125.64782 * 174.86570 * 6 4 2 8 8 C 1.55118 * 104.94053 * 204.04560 * 7 6 4 9 9 C 1.55154 * 101.48649 * 323.21955 * 8 7 6 10 10 H 1.09002 * 110.72034 * 276.83561 * 9 8 7 11 11 N 1.46898 * 110.72069 * 153.73891 * 9 8 7 12 12 C 1.46893 * 111.00126 * 88.84192 * 11 9 8 13 13 H 1.09005 * 109.47339 * 35.00392 * 12 11 9 14 14 C 1.52997 * 109.47633 * 275.00054 * 12 11 9 15 15 C 1.53003 * 109.47010 * 154.99808 * 12 11 9 16 16 C 1.52991 * 109.47597 * 295.00148 * 15 12 11 17 17 C 1.50699 * 109.47727 * 179.97438 * 16 15 12 18 18 H 1.08008 * 119.99682 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00588 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99524 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00353 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46906 * 60.00188 * 21 19 17 23 23 H 1.48499 * 109.46991 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46733 * 300.00212 * 21 19 17 25 25 C 1.47021 * 125.64710 * 354.91277 * 6 4 2 26 26 H 1.08998 * 109.47197 * 185.70273 * 1 2 3 27 27 H 1.09000 * 109.46849 * 305.70205 * 1 2 3 28 28 H 1.08999 * 109.46791 * 65.70016 * 1 2 3 29 29 H 1.09000 * 109.47411 * 240.00667 * 2 1 3 30 30 H 1.08997 * 109.47401 * 179.97438 * 3 2 1 31 31 H 1.08990 * 109.47274 * 300.00075 * 3 2 1 32 32 H 1.09008 * 109.46897 * 60.00394 * 3 2 1 33 33 H 1.09000 * 110.36436 * 323.00700 * 7 6 4 34 34 H 1.08999 * 110.36700 * 85.21464 * 7 6 4 35 35 H 1.09009 * 111.16202 * 205.12826 * 8 7 6 36 36 H 1.09000 * 110.94034 * 81.21695 * 8 7 6 37 37 H 1.00899 * 111.00089 * 212.80303 * 11 9 8 38 38 H 1.09005 * 109.47034 * 300.00525 * 14 12 11 39 39 H 1.08996 * 109.47847 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47189 * 59.99459 * 14 12 11 41 41 H 1.09000 * 109.47104 * 55.00530 * 15 12 11 42 42 H 1.09009 * 109.47121 * 174.99537 * 15 12 11 43 43 H 1.09000 * 109.47206 * 300.00320 * 16 15 12 44 44 H 1.08999 * 109.47258 * 60.00078 * 16 15 12 45 45 H 0.97001 * 119.99502 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.88209 * 59.48370 * 25 6 4 47 47 H 1.09002 * 109.87906 * 298.31671 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.2920 -0.0781 2.2322 6 7 2.1932 -2.0486 1.2175 7 6 2.7737 -2.8548 2.3067 8 6 3.3006 -4.1398 1.6160 9 6 2.2135 -4.3775 0.5349 10 1 1.3580 -4.9045 0.9575 11 7 2.7676 -5.1200 -0.6051 12 6 2.6489 -6.5693 -0.3972 13 1 1.7246 -6.7850 0.1388 14 6 3.8415 -7.0665 0.4221 15 6 2.6298 -7.2790 -1.7526 16 6 1.3702 -6.8759 -2.5217 17 6 1.3517 -7.5744 -3.8569 18 1 2.1576 -8.2398 -4.1295 19 6 0.3055 -7.3650 -4.7302 20 7 -0.6761 -6.5551 -4.3980 21 14 0.2823 -8.2315 -6.3849 22 1 0.2847 -9.7014 -6.1740 23 1 -0.9409 -7.8410 -7.1310 24 1 1.4842 -7.8412 -7.1648 25 6 1.8194 -2.9459 0.1144 26 1 -0.3633 -1.0226 0.1021 27 1 -0.3633 0.5997 0.8345 28 1 -0.3633 0.4229 -0.9366 29 1 1.8934 -0.5137 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.5929 -2.3156 2.7825 34 1 2.0089 -3.1066 3.0414 35 1 3.3437 -4.9738 2.3167 36 1 4.2746 -3.9650 1.1589 37 1 2.3252 -4.8409 -1.4679 38 1 4.7658 -6.8508 -0.1140 39 1 3.7536 -8.1420 0.5759 40 1 3.8551 -6.5609 1.3876 41 1 3.5122 -6.9929 -2.3250 42 1 2.6313 -8.3580 -1.5978 43 1 0.4878 -7.1619 -1.9494 44 1 1.3687 -5.7969 -2.6766 45 1 -1.4120 -6.4075 -5.0126 46 1 2.3569 -2.6642 -0.7909 47 1 0.7445 -2.8929 -0.0584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = -59.969420 kcal Electronic energy + Delta-G solvation = -22883.798882 eV Core-core repulsion = 19679.364298 eV Total energy + Delta-G solvation = -3204.434584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30609 -38.28948 -36.26220 -34.55980 -33.27693 -31.80164 -30.18102 -29.39393 -27.36309 -27.25354 -25.21723 -24.38859 -21.96539 -21.50230 -20.63010 -19.73156 -18.94605 -17.39218 -16.57682 -16.41327 -15.52101 -15.11064 -14.91356 -14.61680 -14.34763 -14.18851 -13.89014 -13.30520 -13.05018 -12.75123 -12.59553 -12.51948 -12.37106 -12.27350 -12.07652 -11.93546 -11.74868 -11.53486 -11.31848 -11.22613 -11.19803 -11.01128 -10.90963 -10.86488 -10.53552 -10.24879 -9.83355 -9.75948 -9.34416 -9.09988 -8.72199 -8.41749 -8.17372 -6.06601 -4.08673 2.56666 2.87441 3.29591 3.34249 3.36811 4.20892 4.41009 4.42851 4.50427 4.65473 4.79732 4.86076 5.13079 5.16915 5.24940 5.29619 5.34339 5.46151 5.46543 5.52662 5.60046 5.64353 5.67028 5.69937 5.74656 5.80266 5.81631 5.89884 6.01046 6.03847 6.07937 6.16918 6.25519 6.32040 6.45380 6.48591 6.83768 7.00407 7.38018 7.42267 7.53570 7.71081 7.76099 7.92449 8.09408 8.36100 8.97619 9.56001 11.04527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016078 B = 0.003842 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.103745 B = 7285.488693 C = 8725.561033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.134 4.134 4 C 0.534 3.466 5 O -0.547 6.547 6 N -0.615 5.615 7 C 0.104 3.896 8 C -0.121 4.121 9 C 0.077 3.923 10 H 0.060 0.940 11 N -0.675 5.675 12 C 0.084 3.916 13 H 0.040 0.960 14 C -0.140 4.140 15 C -0.115 4.115 16 C 0.021 3.979 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.097 3.903 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.355 0.645 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.928 9.300 10.702 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.191 4.191 4 C 0.324 3.676 5 O -0.424 6.424 6 N -0.349 5.349 7 C -0.019 4.019 8 C -0.160 4.160 9 C -0.034 4.034 10 H 0.078 0.922 11 N -0.311 5.311 12 C -0.026 4.026 13 H 0.058 0.942 14 C -0.198 4.198 15 C -0.153 4.153 16 C -0.016 4.016 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.026 4.026 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.520 9.825 11.381 16.016 hybrid contribution -1.124 -0.749 -1.187 1.798 sum 4.396 9.076 10.194 14.340 Atomic orbital electron populations 1.21735 0.92498 1.02705 1.02968 1.21285 0.97969 0.97765 0.96397 1.21647 1.01245 0.93749 1.02476 1.20415 0.77151 0.80234 0.89845 1.90669 1.51675 1.65286 1.34773 1.48460 1.61950 1.05810 1.18693 1.22303 0.97927 0.91545 0.90084 1.22991 0.99754 0.95897 0.97309 1.22556 0.95662 0.92225 0.92979 0.92167 1.60674 1.60824 1.05131 1.04436 1.21674 0.96464 0.86743 0.97704 0.94229 1.21884 0.98916 0.99656 0.99295 1.21843 1.01240 0.98872 0.93368 1.19119 0.91538 0.96356 0.94590 1.21196 1.06512 1.26967 1.01217 0.92727 1.25007 0.95578 0.95290 0.98430 1.69942 1.10385 1.36658 1.36562 0.86666 0.77365 0.80063 0.83976 1.20271 1.21300 1.20194 1.22257 1.00377 0.89526 0.90468 0.92086 0.91999 0.91124 0.88869 0.92468 0.91794 0.91576 0.90577 0.91728 0.90067 0.89592 0.82192 0.92389 0.93081 0.93357 0.92407 0.92656 0.96962 0.96723 0.92955 0.90144 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.18 37.16 0.34 -1.02 16 2 C -0.11 -1.21 2.74 -91.77 -0.25 -1.46 16 3 C -0.13 -1.32 8.75 37.16 0.33 -1.00 16 4 C 0.53 7.23 6.93 -10.98 -0.08 7.15 16 5 O -0.55 -9.10 16.42 5.56 0.09 -9.01 16 6 N -0.61 -7.67 3.33 -170.39 -0.57 -8.24 16 7 C 0.10 1.19 6.89 -2.42 -0.02 1.18 16 8 C -0.12 -1.32 5.66 -24.47 -0.14 -1.46 16 9 C 0.08 0.96 3.24 -65.88 -0.21 0.74 16 10 H 0.06 0.78 7.49 -51.93 -0.39 0.39 16 11 N -0.68 -9.86 6.16 -97.83 -0.60 -10.46 16 12 C 0.08 1.30 2.65 -67.72 -0.18 1.13 16 13 H 0.04 0.65 7.46 -51.93 -0.39 0.26 16 14 C -0.14 -1.84 9.23 37.16 0.34 -1.50 16 15 C -0.12 -2.21 4.74 -26.73 -0.13 -2.34 16 16 C 0.02 0.51 4.80 -27.89 -0.13 0.37 16 17 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.10 1.15 5.82 -3.06 -0.02 1.14 16 26 H 0.06 0.61 7.31 -51.93 -0.38 0.23 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.92 7.21 -51.93 -0.37 0.55 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.71 7.86 -51.92 -0.41 0.30 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.80 6.82 -51.92 -0.35 0.44 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.36 5.78 6.12 -39.29 -0.24 5.54 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.56 5.75 -51.93 -0.30 0.27 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 46 H 0.08 0.95 7.47 -51.93 -0.39 0.56 16 47 H 0.07 0.83 7.31 -51.93 -0.38 0.45 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -30.14 366.17 -8.94 -39.09 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.54 Total: 2.18 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.56 Total: -10.05 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.43 Total: -43.82 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.14 -8.94 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.880 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds