Wall clock time and date at job start Tue Mar 31 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46900 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47313 * 119.99835 * 10 8 6 13 13 H 1.48500 * 109.47238 * 240.00109 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.53118 * 109.52546 * 274.68645 * 15 14 2 17 17 C 1.53038 * 109.28004 * 182.44220 * 16 15 14 18 18 N 1.46839 * 109.52599 * 59.17318 * 17 16 15 19 19 C 1.46907 * 111.00160 * 174.15833 * 18 17 16 20 20 C 1.54039 * 113.81222 * 40.40371 * 19 18 17 21 21 O 1.44175 * 85.51675 * 223.19217 * 20 19 18 22 22 C 1.44182 * 93.33922 * 24.19476 * 21 20 19 23 23 C 1.46848 * 111.20284 * 298.26065 * 18 17 16 24 24 C 1.53038 * 109.51913 * 61.73763 * 23 18 17 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 29 29 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 30 30 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 31 31 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 32 32 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 33 33 H 1.00898 * 111.00476 * 38.95263 * 14 2 1 34 34 H 1.09005 * 109.52369 * 34.87671 * 15 14 2 35 35 H 1.09006 * 109.50109 * 302.37957 * 16 15 14 36 36 H 1.08995 * 109.50545 * 62.49717 * 16 15 14 37 37 H 1.09002 * 109.45989 * 299.16089 * 17 16 15 38 38 H 1.09001 * 109.45183 * 179.19053 * 17 16 15 39 39 H 1.09000 * 112.99798 * 172.38167 * 19 18 17 40 40 H 1.08997 * 113.86283 * 337.34066 * 20 19 18 41 41 H 1.08994 * 113.86532 * 109.04717 * 20 19 18 42 42 H 1.09002 * 113.86126 * 221.66227 * 22 21 20 43 43 H 1.08995 * 113.86675 * 89.95280 * 22 21 20 44 44 H 1.08998 * 109.45976 * 301.72447 * 23 18 17 45 45 H 1.08995 * 109.45385 * 181.74974 * 23 18 17 46 46 H 1.09005 * 109.50303 * 180.87937 * 24 23 18 47 47 H 1.09002 * 109.50343 * 60.76725 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 4.8913 -2.8124 -5.0865 12 1 6.7646 -1.2768 -5.2084 13 1 6.9630 -3.3339 -3.9396 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 3.4150 0.9764 2.3280 17 6 3.5005 1.8826 3.5582 18 7 3.3953 1.0686 4.7757 19 6 3.6118 1.8868 5.9765 20 6 2.9512 3.2767 5.9093 21 8 4.1858 3.7657 6.4708 22 6 4.9510 2.6476 5.9776 23 6 2.1039 0.3722 4.8391 24 6 1.9769 -0.5791 3.6471 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 3.8533 0.4369 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 7.2197 -0.8012 -2.1916 33 1 1.4495 -1.4979 1.4101 34 1 1.2591 0.9347 2.2903 35 1 4.2378 0.2615 2.3448 36 1 3.4774 1.5826 1.4243 37 1 2.6855 2.6061 3.5336 38 1 4.4544 2.4100 3.5551 39 1 3.4116 1.3465 6.9018 40 1 2.7597 3.6253 4.8945 41 1 2.0915 3.3888 6.5699 42 1 5.6773 2.2608 6.6924 43 1 5.3701 2.8042 4.9837 44 1 1.2956 1.1028 4.8085 45 1 2.0438 -0.1973 5.7665 46 1 1.0118 -1.0843 3.6859 47 1 2.7770 -1.3185 3.6847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:15 Heat of formation + Delta-G solvation = -16.943509 kcal Electronic energy + Delta-G solvation = -23159.993279 eV Core-core repulsion = 19957.424438 eV Total energy + Delta-G solvation = -3202.568841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07579 -38.70778 -36.57806 -33.62546 -32.46685 -30.93777 -30.05003 -28.77693 -27.11259 -26.80383 -25.03369 -23.67416 -22.93321 -21.21486 -20.40018 -19.62668 -19.13290 -17.25245 -16.61853 -16.16251 -16.05573 -15.53650 -14.91274 -14.71264 -14.32570 -14.30841 -13.97956 -13.33961 -13.32646 -12.93933 -12.80629 -12.59851 -12.35510 -12.32702 -11.93289 -11.70089 -11.48478 -11.27785 -11.16369 -11.13205 -10.93048 -10.83433 -10.53136 -10.38962 -10.24672 -10.09080 -9.80035 -9.58527 -9.18139 -8.85457 -8.43602 -8.20867 -7.84310 -5.86075 -3.86857 3.37608 3.37732 3.45107 3.49070 3.64949 4.09980 4.41692 4.56271 4.61111 4.78583 4.80840 4.86274 5.11771 5.14916 5.23473 5.26244 5.35198 5.40164 5.47009 5.49553 5.56418 5.57936 5.60572 5.62962 5.67882 5.76706 5.84146 5.91205 6.02560 6.09427 6.15563 6.27043 6.33342 6.43839 6.68176 6.72951 6.88176 6.91799 6.93412 7.34844 7.57631 7.85736 7.88274 8.11140 8.26908 8.60819 9.22387 9.75680 11.24916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.003684 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.928934 B = 7599.450481 C = 8605.416726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 N -0.666 5.666 15 C 0.091 3.909 16 C -0.104 4.104 17 C 0.050 3.950 18 N -0.527 5.527 19 C 0.024 3.976 20 C -0.007 4.007 21 O -0.381 6.381 22 C 0.038 3.962 23 C 0.063 3.937 24 C -0.119 4.119 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.006 0.994 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.334 0.666 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 5.204 16.693 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.296 5.296 15 C -0.019 4.019 16 C -0.142 4.142 17 C -0.078 4.078 18 N -0.251 5.251 19 C -0.085 4.085 20 C -0.085 4.085 21 O -0.299 6.299 22 C -0.039 4.039 23 C -0.065 4.065 24 C -0.157 4.157 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.683 5.179 16.673 19.499 hybrid contribution -1.231 0.121 -0.720 1.432 sum -9.914 5.300 15.953 19.516 Atomic orbital electron populations 1.22541 0.98820 1.01448 1.01082 1.21762 0.90693 0.98328 0.91758 0.91150 1.21622 1.00676 0.98312 0.92987 1.18985 0.88228 0.96390 0.97016 1.21395 0.91834 1.33952 1.08441 0.93151 1.24986 0.97148 0.95796 0.96449 1.69984 1.02073 1.44463 1.36849 0.86652 0.78818 0.79564 0.83620 1.19923 1.21206 1.21136 1.60525 1.57591 1.08747 1.02737 1.21494 0.96555 0.93977 0.89908 1.21592 0.98481 0.98631 0.95537 1.22332 1.00865 0.94978 0.89623 1.61831 1.32539 1.29332 1.01413 1.25094 0.95804 0.92258 0.95369 1.24768 0.89811 0.94335 0.99626 1.89680 1.20483 1.46306 1.73423 1.24249 0.95052 0.84055 1.00528 1.21996 0.89000 0.96379 0.99164 1.21783 1.02225 0.98418 0.93280 0.93932 0.92365 0.92815 0.93547 0.93711 0.97596 0.94812 0.93339 0.84715 0.94989 0.89653 0.91070 0.94792 0.90282 0.86829 0.89564 0.89532 0.88696 0.89265 0.95074 0.90717 0.91884 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 9.15 37.16 0.34 -2.06 16 2 C 0.08 1.39 2.40 -67.71 -0.16 1.22 16 3 H 0.07 1.22 7.16 -51.93 -0.37 0.85 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 7 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 10 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 N -0.67 -10.34 5.51 -99.61 -0.55 -10.89 16 15 C 0.09 1.20 2.37 -67.59 -0.16 1.04 16 16 C -0.10 -1.50 5.58 -26.65 -0.15 -1.65 16 17 C 0.05 0.58 4.45 -3.84 -0.02 0.56 16 18 N -0.53 -5.64 4.79 -234.60 -1.12 -6.77 16 19 C 0.02 0.23 4.10 -66.63 -0.27 -0.05 16 20 C -0.01 -0.06 8.51 37.61 0.32 0.26 16 21 O -0.38 -4.45 12.45 -35.23 -0.44 -4.89 16 22 C 0.04 0.38 8.69 37.61 0.33 0.70 16 23 C 0.06 0.61 5.44 -3.83 -0.02 0.59 16 24 C -0.12 -1.31 5.36 -26.65 -0.14 -1.45 16 25 H 0.04 0.51 7.43 -51.93 -0.39 0.12 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.03 0.95 7.75 -51.93 -0.40 0.54 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.33 4.73 8.10 -39.29 -0.32 4.41 16 34 H 0.03 0.42 7.12 -51.93 -0.37 0.05 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 37 H 0.03 0.37 6.30 -51.93 -0.33 0.04 16 38 H 0.08 0.91 5.96 -51.93 -0.31 0.60 16 39 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.09 0.82 5.67 -51.93 -0.29 0.53 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.90 6.08 -51.93 -0.32 0.58 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -31.17 358.06 -10.13 -41.30 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.52 Total: 1.42 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.61 Total: -16.05 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.94 Total: -44.27 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.44 Total: -4.89 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.17 -10.13 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.360 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds