Wall clock time and date at job start Tue Mar 31 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46975 * 2 1 4 4 C 1.53002 * 109.46658 * 119.99829 * 2 1 3 5 5 C 1.53007 * 109.47055 * 185.00221 * 4 2 1 6 6 C 1.50693 * 109.47152 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99868 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00327 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00669 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99704 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47227 * 89.99934 * 10 8 6 12 12 H 1.48495 * 109.47174 * 210.00043 * 10 8 6 13 13 H 1.48498 * 109.46940 * 330.00290 * 10 8 6 14 14 N 1.46899 * 109.47242 * 239.99693 * 2 1 3 15 15 C 1.46901 * 111.00065 * 103.52498 * 14 2 1 16 16 C 1.53124 * 109.51950 * 271.86525 * 15 14 2 17 17 C 1.53039 * 109.26970 * 182.50328 * 16 15 14 18 18 N 1.46840 * 109.57988 * 59.08434 * 17 16 15 19 19 C 1.46899 * 111.00174 * 174.18884 * 18 17 16 20 20 C 1.54029 * 113.81586 * 40.39995 * 19 18 17 21 21 O 1.44184 * 85.51681 * 223.19427 * 20 19 18 22 22 C 1.44169 * 93.33804 * 24.19235 * 21 20 19 23 23 C 1.46849 * 111.19702 * 298.28637 * 18 17 16 24 24 C 1.53039 * 109.52246 * 61.74383 * 23 18 17 25 25 H 1.08994 * 109.47629 * 298.92706 * 1 2 3 26 26 H 1.09007 * 109.46708 * 58.92721 * 1 2 3 27 27 H 1.08995 * 109.47077 * 178.91905 * 1 2 3 28 28 H 1.08994 * 109.47621 * 65.00056 * 4 2 1 29 29 H 1.09004 * 109.47275 * 304.99976 * 4 2 1 30 30 H 1.09003 * 109.47130 * 59.99679 * 5 4 2 31 31 H 1.08997 * 109.46526 * 300.00080 * 5 4 2 32 32 H 0.96996 * 120.00191 * 180.02562 * 9 8 6 33 33 H 1.00899 * 111.00268 * 339.56364 * 14 2 1 34 34 H 1.08998 * 109.52089 * 31.98584 * 15 14 2 35 35 H 1.08997 * 109.50055 * 302.37810 * 16 15 14 36 36 H 1.09001 * 109.49921 * 62.49844 * 16 15 14 37 37 H 1.09007 * 109.41572 * 299.06475 * 17 16 15 38 38 H 1.09002 * 109.46348 * 179.13371 * 17 16 15 39 39 H 1.09001 * 112.99773 * 172.38521 * 19 18 17 40 40 H 1.09001 * 113.86647 * 337.34165 * 20 19 18 41 41 H 1.08999 * 113.86667 * 109.04897 * 20 19 18 42 42 H 1.09000 * 113.86324 * 221.66086 * 22 21 20 43 43 H 1.08999 * 113.86675 * 89.95661 * 22 21 20 44 44 H 1.08995 * 109.46186 * 301.72469 * 23 18 17 45 45 H 1.09002 * 109.45253 * 181.75037 * 23 18 17 46 46 H 1.09002 * 109.50339 * 180.88289 * 24 23 18 47 47 H 1.08994 * 109.54109 * 60.77550 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0670 -1.3231 2.5447 7 1 3.3683 -1.8029 3.2142 8 6 5.4182 -1.3601 2.8161 9 7 5.8566 -1.9800 3.8900 10 14 6.6266 -0.5309 1.6578 11 1 6.8324 0.8773 2.0822 12 1 7.9233 -1.2536 1.6948 13 1 6.0846 -0.5570 0.2755 14 7 2.0197 -0.6925 -1.1994 15 6 2.4976 0.2674 -2.2034 16 6 1.3309 0.6957 -3.0979 17 6 1.8468 1.6469 -4.1800 18 7 2.8781 0.9716 -4.9779 19 6 3.2975 1.8066 -6.1114 20 6 3.4347 3.3013 -5.7657 21 8 2.7680 3.5370 -7.0222 22 6 2.1375 2.2405 -7.0272 23 6 4.0293 0.5944 -4.1478 24 6 3.5789 -0.3896 -3.0657 25 1 -0.3634 0.4970 0.8994 26 1 -0.3633 0.5305 -0.8803 27 1 -0.3633 -1.0274 -0.0194 28 1 1.7516 -1.7715 1.2058 29 1 1.6052 -0.2617 2.1370 30 1 3.8532 0.4370 1.3575 31 1 3.9994 -1.0728 0.4262 32 1 6.8072 -2.0056 4.0811 33 1 1.3081 -1.2950 -1.5850 34 1 2.9126 1.1421 -1.7025 35 1 0.8906 -0.1839 -3.5675 36 1 0.5774 1.2028 -2.4952 37 1 2.2735 2.5331 -3.7100 38 1 1.0214 1.9417 -4.8281 39 1 4.1528 1.3968 -6.6487 40 1 2.8552 3.6075 -4.8947 41 1 4.4653 3.6553 -5.7401 42 1 2.1393 1.7530 -8.0021 43 1 1.1619 2.2227 -6.5415 44 1 4.4457 1.4853 -3.6780 45 1 4.7888 0.1244 -4.7726 46 1 4.4304 -0.6573 -2.4401 47 1 3.1751 -1.2871 -3.5342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:18 Heat of formation + Delta-G solvation = -13.569583 kcal Electronic energy + Delta-G solvation = -23255.405863 eV Core-core repulsion = 20052.983327 eV Total energy + Delta-G solvation = -3202.422536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21356 -38.88117 -36.69421 -33.73087 -32.48544 -31.10197 -30.31992 -29.11486 -27.23985 -26.92572 -25.25197 -23.67305 -22.99920 -21.12154 -20.61655 -19.92479 -19.15479 -17.40004 -16.74881 -16.55729 -16.27495 -15.54856 -15.07040 -15.02136 -14.28406 -14.15547 -13.85145 -13.48152 -13.41700 -13.33406 -12.84467 -12.61577 -12.53214 -12.44191 -12.19389 -11.84221 -11.75594 -11.55391 -11.33269 -11.27568 -11.02859 -10.93642 -10.75435 -10.62588 -10.15717 -9.95883 -9.78642 -9.60720 -9.44265 -9.00306 -8.58444 -8.42820 -7.97736 -5.94017 -3.89693 3.25241 3.36767 3.43863 3.50208 3.51612 3.98452 4.31258 4.49940 4.54982 4.58267 4.68679 4.81010 4.91981 5.00876 5.12984 5.13960 5.21525 5.26614 5.38731 5.41336 5.41672 5.48188 5.49788 5.55000 5.60872 5.65208 5.71148 5.74520 5.85522 5.96416 6.00007 6.17103 6.25403 6.30939 6.36530 6.57538 6.70244 6.74977 6.80305 7.13875 7.37987 7.53881 7.72657 7.77373 7.95244 8.67104 9.12647 9.70206 11.20048 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.004007 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.118405 B = 6986.050707 C = 7999.143489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 H 0.063 0.937 4 C -0.089 4.089 5 C -0.005 4.005 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.880 3.120 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.262 1.262 14 N -0.669 5.669 15 C 0.089 3.911 16 C -0.144 4.144 17 C 0.052 3.948 18 N -0.528 5.528 19 C 0.024 3.976 20 C -0.006 4.006 21 O -0.380 6.380 22 C 0.038 3.962 23 C 0.056 3.944 24 C -0.106 4.106 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.049 0.951 30 H -0.001 1.001 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.337 0.663 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 8.280 -21.125 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 H 0.081 0.919 4 C -0.127 4.127 5 C -0.043 4.043 6 C -0.553 4.553 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.186 1.186 14 N -0.299 5.299 15 C -0.021 4.021 16 C -0.184 4.184 17 C -0.077 4.077 18 N -0.253 5.253 19 C -0.085 4.085 20 C -0.085 4.085 21 O -0.298 6.298 22 C -0.039 4.039 23 C -0.071 4.071 24 C -0.144 4.144 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.017 0.983 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.381 7.890 -21.111 24.045 hybrid contribution 0.255 1.412 -0.339 1.474 sum -8.127 9.302 -21.449 24.751 Atomic orbital electron populations 1.22499 0.97668 1.01834 1.01368 1.21842 0.91757 0.97335 0.91884 0.91881 1.21463 0.98739 0.99262 0.93249 1.19459 0.91764 0.95510 0.97543 1.21268 0.92774 1.33844 1.07393 0.91419 1.25033 0.98448 0.95166 0.95070 1.69928 1.14393 1.44144 1.26523 0.86767 0.80455 0.79409 0.82613 1.20728 1.21697 1.18648 1.60544 1.42696 1.20767 1.05861 1.21723 0.94110 0.94719 0.91586 1.22442 0.99075 1.00011 0.96865 1.22209 0.94741 0.95626 0.95076 1.61868 1.11868 1.41644 1.09902 1.25102 0.98984 0.91000 0.93446 1.24778 0.98950 0.96552 0.88213 1.89689 1.65801 1.36515 1.37795 1.24216 0.96687 0.82546 1.00439 1.22125 0.91798 0.98402 0.94820 1.21584 0.99300 0.98110 0.95404 0.92195 0.93566 0.92395 0.92694 0.93236 0.98301 0.95126 0.92990 0.84426 0.90998 0.90898 0.91487 0.94331 0.90725 0.86622 0.89614 0.89225 0.88739 0.89679 0.94647 0.90475 0.90248 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.09 37.16 0.34 -1.80 16 2 C 0.08 1.24 2.70 -67.71 -0.18 1.05 16 3 H 0.06 0.99 7.14 -51.93 -0.37 0.62 16 4 C -0.09 -1.76 4.83 -26.73 -0.13 -1.89 16 5 C -0.01 -0.13 3.93 -27.88 -0.11 -0.24 16 6 C -0.51 -15.06 9.66 -34.44 -0.33 -15.39 16 7 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 8 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 9 N -0.91 -28.81 13.96 55.43 0.77 -28.03 16 10 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 14 N -0.67 -9.57 5.58 -99.61 -0.56 -10.12 16 15 C 0.09 1.11 2.51 -67.59 -0.17 0.94 16 16 C -0.14 -1.43 5.36 -26.65 -0.14 -1.57 16 17 C 0.05 0.47 4.45 -3.84 -0.02 0.45 16 18 N -0.53 -4.94 4.80 -234.61 -1.13 -6.06 16 19 C 0.02 0.20 4.10 -66.64 -0.27 -0.07 16 20 C -0.01 -0.05 8.51 37.60 0.32 0.27 16 21 O -0.38 -4.02 12.45 -35.23 -0.44 -4.46 16 22 C 0.04 0.31 8.69 37.61 0.33 0.64 16 23 C 0.06 0.58 5.44 -3.83 -0.02 0.56 16 24 C -0.11 -1.29 5.71 -26.65 -0.15 -1.45 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.49 6.57 -51.93 -0.34 0.14 16 27 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.00 -0.03 7.57 -51.93 -0.39 -0.43 16 31 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.34 4.29 7.87 -39.29 -0.31 3.98 16 34 H 0.07 1.00 7.28 -51.93 -0.38 0.62 16 35 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 36 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 37 H 0.04 0.36 6.30 -51.92 -0.33 0.03 16 38 H 0.07 0.61 5.96 -51.93 -0.31 0.30 16 39 H 0.12 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.09 0.74 5.67 -51.93 -0.29 0.45 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.64 6.08 -51.93 -0.32 0.33 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -31.84 353.12 -9.72 -41.56 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.39 Total: 0.89 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.64 Total: -16.72 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.91 Total: -44.22 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.44 Total: -4.46 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.84 -9.72 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.990 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds