Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.52997 * 109.47049 * 239.99881 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99763 * 4 2 1 6 6 C 1.50698 * 109.47184 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00046 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 N 1.46905 * 109.46983 * 120.00185 * 2 1 3 15 15 C 1.46948 * 111.00047 * 58.79944 * 14 2 1 16 16 C 1.53055 * 109.36307 * 176.80914 * 15 14 2 17 17 N 1.46964 * 109.36067 * 58.40226 * 16 15 14 18 18 C 1.46908 * 110.99574 * 176.81238 * 17 16 15 19 19 H 1.09000 * 110.44859 * 181.19458 * 18 17 16 20 20 C 1.54511 * 110.50803 * 303.79736 * 18 17 16 21 21 C 1.54477 * 104.05757 * 118.64911 * 20 18 17 22 22 O 1.44423 * 104.80716 * 23.97824 * 21 20 18 23 23 C 1.44423 * 105.27263 * 319.48222 * 22 21 20 24 24 C 1.46957 * 110.87796 * 300.67531 * 17 16 15 25 25 C 1.46962 * 110.99868 * 294.99555 * 14 2 1 26 26 H 1.09000 * 109.46959 * 299.99967 * 1 2 3 27 27 H 1.08998 * 109.47252 * 59.99923 * 1 2 3 28 28 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 55.00084 * 4 2 1 30 30 H 1.09001 * 109.47502 * 294.99606 * 4 2 1 31 31 H 1.09001 * 109.47002 * 60.00426 * 5 4 2 32 32 H 1.08993 * 109.46955 * 299.99989 * 5 4 2 33 33 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 34 34 H 1.08995 * 109.49116 * 296.77860 * 15 14 2 35 35 H 1.09002 * 109.49288 * 56.84370 * 15 14 2 36 36 H 1.08994 * 109.49288 * 298.43458 * 16 15 14 37 37 H 1.08991 * 109.50819 * 178.37818 * 16 15 14 38 38 H 1.09004 * 110.50676 * 237.28897 * 20 18 17 39 39 H 1.09002 * 110.51408 * 359.86506 * 20 18 17 40 40 H 1.09011 * 110.36998 * 142.80793 * 21 20 18 41 41 H 1.09003 * 110.37257 * 265.02651 * 21 20 18 42 42 H 1.08990 * 110.37919 * 281.68575 * 23 22 21 43 43 H 1.09001 * 110.36822 * 159.34296 * 23 22 21 44 44 H 1.08995 * 109.49410 * 299.35484 * 24 17 16 45 45 H 1.08998 * 109.50311 * 179.30053 * 24 17 16 46 46 H 1.08999 * 109.48895 * 303.15734 * 25 14 2 47 47 H 1.08996 * 109.48666 * 63.20280 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0672 -1.3242 -2.5438 7 1 3.3687 -1.8047 -3.2129 8 6 5.4185 -1.3604 -2.8156 9 7 6.2690 -0.7750 -2.0011 10 14 6.0411 -2.2411 -4.3408 11 1 7.5211 -2.1364 -4.4033 12 1 5.4486 -1.6155 -5.5502 13 1 5.6487 -3.6721 -4.2810 14 7 2.0197 -0.6926 1.1995 15 6 1.5252 -2.0755 1.2478 16 6 2.1202 -2.7849 2.4666 17 7 1.7490 -2.0529 3.6857 18 6 2.2388 -2.7454 4.8852 19 1 1.9407 -2.2065 5.7845 20 6 1.7124 -4.1976 4.9246 21 6 2.9923 -5.0618 4.8882 22 8 4.0322 -4.2032 5.4054 23 6 3.7744 -2.9041 4.8295 24 6 2.2436 -0.6699 3.6372 25 6 1.6486 0.0394 2.4186 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6053 -0.2617 -2.1369 30 1 1.7517 -1.7716 -1.2056 31 1 3.9995 -1.0728 -0.4260 32 1 3.8532 0.4369 -1.3574 33 1 5.9456 -0.3173 -1.2093 34 1 0.4379 -2.0705 1.3249 35 1 1.8232 -2.6003 0.3402 36 1 3.2060 -2.8140 2.3763 37 1 1.7324 -3.8020 2.5209 38 1 1.1562 -4.3773 5.8447 39 1 1.0869 -4.4009 4.0554 40 1 2.8751 -5.9404 5.5228 41 1 3.2190 -5.3612 3.8650 42 1 4.1221 -2.8709 3.7970 43 1 4.2580 -2.1251 5.4189 44 1 3.3308 -0.6749 3.5602 45 1 1.9458 -0.1449 4.5448 46 1 2.0368 1.0565 2.3644 47 1 0.5628 0.0689 2.5087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -38.327347 kcal Electronic energy + Delta-G solvation = -23824.712526 eV Core-core repulsion = 20621.216412 eV Total energy + Delta-G solvation = -3203.496114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46445 -38.78443 -36.24046 -33.68687 -32.19667 -30.93692 -30.54182 -29.08348 -28.27620 -25.55281 -24.53539 -23.69097 -23.14992 -21.71112 -20.80729 -19.93351 -18.68116 -17.10087 -16.56032 -16.54847 -15.60421 -15.52252 -14.94771 -14.70535 -14.61941 -14.02355 -13.83327 -13.68108 -13.40245 -13.27816 -12.80298 -12.47172 -12.35427 -12.00267 -11.91632 -11.88601 -11.66633 -11.29134 -11.20967 -11.07620 -11.00016 -10.78628 -10.66811 -10.45071 -10.16353 -10.03262 -9.98531 -9.75088 -9.55260 -8.41080 -8.35463 -8.21821 -7.85185 -6.24831 -3.92594 3.47894 3.50032 3.55115 3.68730 4.07923 4.15390 4.37413 4.57022 4.62064 4.80993 4.84931 5.02117 5.08275 5.13182 5.26985 5.36661 5.38935 5.43582 5.47766 5.52469 5.52525 5.55290 5.60259 5.62359 5.68730 5.69412 5.80144 5.90053 5.98886 6.03127 6.11540 6.16586 6.23632 6.32913 6.51012 6.56755 6.74372 6.94090 6.96101 7.11341 7.42900 7.46661 7.63279 7.81586 8.36004 8.59715 9.01524 9.79521 11.15983 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.004680 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.160923 B = 5981.548078 C = 7124.047815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 H 0.076 0.924 4 C -0.096 4.096 5 C 0.018 3.982 6 C -0.602 4.602 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.065 2.935 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.289 1.289 14 N -0.521 5.521 15 C 0.055 3.945 16 C 0.047 3.953 17 N -0.527 5.527 18 C 0.054 3.946 19 H 0.095 0.905 20 C -0.151 4.151 21 C 0.041 3.959 22 O -0.374 6.374 23 C 0.008 3.992 24 C 0.056 3.944 25 C 0.056 3.944 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.000 1.000 33 H 0.269 0.731 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.927 -3.301 14.443 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.094 0.906 4 C -0.134 4.134 5 C -0.019 4.019 6 C -0.640 4.640 7 H 0.062 0.938 8 C -0.189 4.189 9 N -0.552 5.552 10 Si 0.894 3.106 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.216 1.216 14 N -0.245 5.245 15 C -0.073 4.073 16 C -0.080 4.080 17 N -0.252 5.252 18 C -0.055 4.055 19 H 0.113 0.887 20 C -0.189 4.189 21 C -0.036 4.036 22 O -0.292 6.292 23 C -0.070 4.070 24 C -0.072 4.072 25 C -0.073 4.073 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.370 -3.745 13.742 17.618 hybrid contribution -1.630 0.510 0.673 1.836 sum -12.000 -3.236 14.415 19.033 Atomic orbital electron populations 1.22477 0.98608 1.01738 1.01396 1.21864 0.91362 0.98507 0.90990 0.90555 1.21617 0.99902 0.98499 0.93397 1.19103 0.89809 0.95905 0.97087 1.22129 0.94520 1.37791 1.09589 0.93820 1.25755 0.93537 0.96963 1.02668 1.70755 1.37286 1.33363 1.13817 0.83606 0.76157 0.75819 0.75014 1.20864 1.21607 1.21614 1.62302 1.59079 1.01725 1.01413 1.22194 0.97207 0.90014 0.97888 1.22330 0.99590 0.97249 0.88841 1.62438 1.58686 1.02400 1.01628 1.23106 0.92599 0.95360 0.94447 0.88694 1.23041 0.98392 0.93756 1.03733 1.23459 0.86377 0.94214 0.99519 1.89119 1.50412 1.20220 1.69472 1.24233 0.96796 0.86243 0.99740 1.22166 0.98444 0.88510 0.98120 1.22129 0.98285 0.97348 0.89512 0.93250 0.92336 0.92618 0.93132 0.93134 0.96099 0.98219 0.92002 0.94315 0.89249 0.93150 0.90383 0.90348 0.89274 0.89109 0.92147 0.91142 0.89180 0.93563 0.90638 0.90579 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.49 37.16 0.32 -2.23 16 2 C 0.08 1.36 2.35 -67.71 -0.16 1.20 16 3 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 4 C -0.10 -1.98 4.45 -26.73 -0.12 -2.10 16 5 C 0.02 0.47 4.17 -27.88 -0.12 0.35 16 6 C -0.60 -17.45 9.11 -34.44 -0.31 -17.77 16 7 H 0.04 1.25 7.74 -52.48 -0.41 0.84 16 8 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 9 N -0.92 -28.73 13.65 55.43 0.76 -27.97 16 10 Si 1.07 25.86 29.90 -169.99 -5.08 20.78 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.52 -8.38 4.15 -226.49 -0.94 -9.32 16 15 C 0.06 0.83 4.82 -3.77 -0.02 0.81 16 16 C 0.05 0.64 4.93 -3.76 -0.02 0.62 16 17 N -0.53 -6.29 4.74 -224.61 -1.06 -7.35 16 18 C 0.05 0.57 3.27 -66.14 -0.22 0.36 16 19 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.15 -1.41 6.19 -25.16 -0.16 -1.57 16 21 C 0.04 0.42 7.63 37.93 0.29 0.71 16 22 O -0.37 -4.90 11.65 -35.23 -0.41 -5.31 16 23 C 0.01 0.10 6.04 37.93 0.23 0.33 16 24 C 0.06 0.67 5.36 -3.77 -0.02 0.65 16 25 C 0.06 0.74 5.25 -3.77 -0.02 0.72 16 26 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.77 6.45 -51.93 -0.34 0.43 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.03 6.11 -51.93 -0.32 0.71 16 31 H 0.02 0.57 7.62 -51.93 -0.40 0.18 16 32 H 0.00 -0.01 8.01 -51.93 -0.42 -0.43 16 33 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 34 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 35 H 0.09 1.51 6.07 -51.93 -0.32 1.20 16 36 H 0.05 0.78 6.05 -51.93 -0.31 0.47 16 37 H 0.08 0.93 6.05 -51.93 -0.31 0.61 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.84 6.22 -51.93 -0.32 0.51 16 40 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.97 5.65 -51.93 -0.29 0.68 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.62 7.38 -51.93 -0.38 0.24 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.99 8.12 -51.93 -0.42 0.56 16 47 H 0.04 0.52 6.60 -51.93 -0.34 0.17 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.62 344.53 -10.12 -41.74 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.15 Total: -0.17 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.42 Total: -17.59 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -1.25 Total: -44.65 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.41 Total: -5.31 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.62 -10.12 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.415 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds