Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.52996 * 109.47102 * 175.00294 * 4 2 1 6 6 C 1.50696 * 109.47060 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00136 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00188 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99748 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00236 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47071 * 89.99542 * 10 8 6 12 12 H 1.48503 * 109.46958 * 209.99952 * 10 8 6 13 13 H 1.48499 * 109.46733 * 329.99973 * 10 8 6 14 14 N 1.46902 * 109.47094 * 120.00779 * 2 1 3 15 15 C 1.46953 * 111.00403 * 58.79614 * 14 2 1 16 16 C 1.53052 * 109.36655 * 176.81477 * 15 14 2 17 17 N 1.46950 * 109.36320 * 58.40098 * 16 15 14 18 18 C 1.46905 * 110.99879 * 176.81135 * 17 16 15 19 19 H 1.09005 * 110.43282 * 72.70895 * 18 17 16 20 20 C 1.54815 * 110.48809 * 310.02107 * 18 17 16 21 21 C 1.54992 * 102.08936 * 220.44271 * 20 18 17 22 22 O 1.44387 * 103.49380 * 37.02374 * 21 20 18 23 23 C 1.43747 * 106.97380 * 319.93820 * 22 21 20 24 24 C 1.46956 * 110.88390 * 300.68127 * 17 16 15 25 25 C 1.46960 * 110.99509 * 294.99779 * 14 2 1 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 28 28 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 29 29 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 30 30 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 31 31 H 1.09006 * 109.46822 * 299.99923 * 5 4 2 32 32 H 1.08997 * 109.47474 * 60.00037 * 5 4 2 33 33 H 0.96994 * 119.99934 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.48958 * 296.78182 * 15 14 2 35 35 H 1.08999 * 109.48822 * 56.84716 * 15 14 2 36 36 H 1.08994 * 109.48746 * 298.43260 * 16 15 14 37 37 H 1.09001 * 109.48773 * 178.37145 * 16 15 14 38 38 H 1.08998 * 110.90697 * 338.64097 * 20 18 17 39 39 H 1.08990 * 110.90524 * 102.24240 * 20 18 17 40 40 H 1.09005 * 110.61815 * 278.52197 * 21 20 18 41 41 H 1.09005 * 110.61688 * 155.52630 * 21 20 18 42 42 H 1.08994 * 109.87520 * 267.09119 * 23 22 21 43 43 H 1.08991 * 109.87583 * 145.93417 * 23 22 21 44 44 H 1.09000 * 109.48758 * 299.35493 * 24 17 16 45 45 H 1.08999 * 109.49193 * 179.28853 * 24 17 16 46 46 H 1.08998 * 109.48758 * 303.15519 * 25 14 2 47 47 H 1.09002 * 109.48963 * 63.22475 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0670 -1.3232 -2.5445 7 1 3.3686 -1.8036 -3.2136 8 6 5.4183 -1.3593 -2.8164 9 7 6.2688 -0.7738 -2.0018 10 14 6.0410 -2.2398 -4.3417 11 1 6.0902 -1.2857 -5.4785 12 1 7.4026 -2.7735 -4.0839 13 1 5.1250 -3.3601 -4.6750 14 7 2.0196 -0.6927 1.1994 15 6 1.5251 -2.0756 1.2477 16 6 2.1200 -2.7851 2.4664 17 7 1.7489 -2.0532 3.6855 18 6 2.2386 -2.7458 4.8849 19 1 3.3198 -2.6379 4.9720 20 6 1.8418 -4.2418 4.8467 21 6 1.4392 -4.5085 6.3195 22 8 0.7857 -3.2840 6.7172 23 6 1.5390 -2.2014 6.1454 24 6 2.2434 -0.6702 3.6372 25 6 1.6485 0.0392 2.4185 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.7516 -1.7715 -1.2058 30 1 1.6053 -0.2616 -2.1370 31 1 3.8531 0.4370 -1.3573 32 1 3.9994 -1.0729 -0.4260 33 1 7.2193 -0.7989 -2.1933 34 1 0.4378 -2.0706 1.3248 35 1 1.8232 -2.6004 0.3400 36 1 3.2058 -2.8142 2.3760 37 1 1.7319 -3.8022 2.5204 38 1 0.9969 -4.4031 4.1772 39 1 2.6899 -4.8618 4.5569 40 1 2.3226 -4.6887 6.9323 41 1 0.7491 -5.3499 6.3824 42 1 2.2833 -1.8500 6.8599 43 1 0.8685 -1.3861 5.8743 44 1 3.3307 -0.6753 3.5602 45 1 1.9453 -0.1455 4.5449 46 1 2.0367 1.0563 2.3644 47 1 0.5626 0.0683 2.5089 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = -37.919369 kcal Electronic energy + Delta-G solvation = -23482.576278 eV Core-core repulsion = 20279.097856 eV Total energy + Delta-G solvation = -3203.478422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14456 -38.81037 -36.23707 -33.41304 -32.13316 -30.97250 -30.54669 -29.20284 -28.41644 -25.54552 -24.89873 -23.84313 -22.22120 -21.57999 -20.74658 -19.99966 -18.77766 -17.03660 -16.54037 -16.13055 -15.78064 -15.32424 -14.85703 -14.65541 -14.41922 -14.34470 -14.28465 -13.58646 -13.18930 -13.02175 -12.74828 -12.48086 -12.12698 -11.92072 -11.78810 -11.64939 -11.45556 -11.43362 -11.30216 -11.18110 -10.91109 -10.87529 -10.65849 -10.44772 -10.38606 -10.03444 -9.82062 -9.59461 -9.20617 -8.89886 -8.37518 -8.25473 -7.74325 -5.90634 -3.92130 3.35174 3.41444 3.44568 3.70799 3.79799 4.25289 4.30005 4.51983 4.71582 4.91625 4.95862 5.00459 5.13879 5.21816 5.34613 5.44374 5.44926 5.46982 5.49470 5.53826 5.55057 5.58948 5.62361 5.68013 5.72052 5.73925 5.80862 5.95035 6.06366 6.12760 6.19694 6.26364 6.33682 6.43130 6.65277 6.66572 6.87953 7.01639 7.03542 7.27297 7.54198 7.59239 7.83102 8.04789 8.19523 8.54924 9.16963 9.70731 11.20273 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020506 B = 0.003837 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.122882 B = 7296.187374 C = 8020.809695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.104 4.104 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.519 5.519 15 C 0.055 3.945 16 C 0.055 3.945 17 N -0.529 5.529 18 C 0.049 3.951 19 H 0.057 0.943 20 C -0.152 4.152 21 C 0.048 3.952 22 O -0.377 6.377 23 C 0.056 3.944 24 C 0.056 3.944 25 C 0.056 3.944 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.030 0.970 33 H 0.258 0.742 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 -3.414 15.427 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.243 5.243 15 C -0.073 4.073 16 C -0.072 4.072 17 N -0.255 5.255 18 C -0.060 4.060 19 H 0.074 0.926 20 C -0.189 4.189 21 C -0.029 4.029 22 O -0.296 6.296 23 C -0.021 4.021 24 C -0.072 4.072 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.348 -3.359 15.582 19.004 hybrid contribution 0.742 -0.418 -1.043 1.347 sum -9.606 -3.777 14.539 17.831 Atomic orbital electron populations 1.22490 0.98805 1.01675 1.01306 1.21850 0.91141 0.98593 0.91017 0.90487 1.21751 1.00772 0.98314 0.93301 1.18986 0.88079 0.96704 0.96874 1.21345 0.91848 1.34134 1.08458 0.93118 1.24994 0.97137 0.95769 0.96455 1.69978 1.02176 1.44364 1.36860 0.86693 0.78125 0.80010 0.83734 1.20809 1.21343 1.20006 1.62301 1.59007 1.01660 1.01347 1.22198 0.97128 0.90092 0.97900 1.22236 0.99368 0.97046 0.88588 1.62335 1.59237 1.02382 1.01549 1.23034 0.97580 0.93943 0.91417 0.92550 1.23289 1.02761 0.94941 0.97951 1.23512 0.97384 0.88411 0.93580 1.88876 1.51648 1.14934 1.74099 1.23209 0.95512 0.90918 0.92439 1.22199 0.98376 0.88631 0.98043 1.22116 0.98178 0.97355 0.89556 0.92673 0.93336 0.92401 0.93312 0.93283 0.97272 0.95193 0.93245 0.94422 0.89173 0.93534 0.90447 0.89184 0.90140 0.92324 0.88954 0.92513 0.88936 0.93624 0.90835 0.90575 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.49 37.16 0.32 -2.29 16 2 C 0.08 1.40 2.35 -67.71 -0.16 1.24 16 3 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 4 C -0.10 -2.12 4.45 -26.73 -0.12 -2.24 16 5 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 6 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 10 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 N -0.52 -8.56 4.15 -226.49 -0.94 -9.50 16 15 C 0.05 0.84 4.82 -3.77 -0.02 0.82 16 16 C 0.06 0.76 5.24 -3.77 -0.02 0.74 16 17 N -0.53 -6.62 4.47 -224.66 -1.00 -7.63 16 18 C 0.05 0.53 2.79 -66.18 -0.18 0.35 16 19 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 20 C -0.15 -1.44 5.55 -24.72 -0.14 -1.58 16 21 C 0.05 0.43 7.72 38.21 0.29 0.73 16 22 O -0.38 -4.44 11.52 -35.23 -0.41 -4.84 16 23 C 0.06 0.59 6.96 37.73 0.26 0.85 16 24 C 0.06 0.70 5.42 -3.77 -0.02 0.68 16 25 C 0.06 0.78 5.25 -3.76 -0.02 0.76 16 26 H 0.05 0.78 6.46 -51.93 -0.34 0.44 16 27 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.98 6.12 -51.93 -0.32 0.67 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.04 0.56 6.47 -51.93 -0.34 0.22 16 35 H 0.09 1.53 6.07 -51.93 -0.32 1.22 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.94 6.18 -51.93 -0.32 0.62 16 38 H 0.09 0.92 6.98 -51.93 -0.36 0.56 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.00 7.13 -51.93 -0.37 0.63 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.78 7.00 -51.93 -0.36 0.42 16 46 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 47 H 0.04 0.53 6.60 -51.93 -0.34 0.18 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -30.97 349.77 -10.13 -41.11 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -8.42 Total: -1.90 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.35 Total: -12.87 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.21 Total: -43.63 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.41 Total: -4.84 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.97 -10.13 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.189 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds