Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21278 * 119.99488 * 2 1 4 4 N 1.34780 * 119.99961 * 180.28033 * 2 1 3 5 5 C 1.46503 * 119.99547 * 179.72233 * 4 2 1 6 6 H 1.08997 * 109.47167 * 324.99783 * 5 4 2 7 7 C 1.52990 * 109.46954 * 85.00192 * 5 4 2 8 8 C 1.53009 * 109.46941 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46868 * 299.99641 * 8 7 5 10 10 H 1.08997 * 109.47296 * 299.99878 * 9 8 7 11 11 N 1.46898 * 109.47155 * 180.02562 * 9 8 7 12 12 C 1.46900 * 111.00189 * 153.83361 * 11 9 8 13 13 H 1.09000 * 109.46976 * 35.80970 * 12 11 9 14 14 C 1.52994 * 109.47477 * 275.80761 * 12 11 9 15 15 C 1.53002 * 109.46890 * 155.80799 * 12 11 9 16 16 C 1.52995 * 109.47338 * 295.00309 * 15 12 11 17 17 C 1.50704 * 109.47459 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99399 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00345 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00451 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00040 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47263 * 89.99499 * 21 19 17 23 23 H 1.48504 * 109.47109 * 210.00016 * 21 19 17 24 24 H 1.48505 * 109.46879 * 329.99666 * 21 19 17 25 25 C 1.53003 * 109.47062 * 60.00165 * 9 8 7 26 26 C 1.52999 * 109.46683 * 205.00136 * 5 4 2 27 27 H 1.09004 * 109.46838 * 239.71988 * 1 2 3 28 28 H 1.09000 * 109.47788 * 359.71931 * 1 2 3 29 29 H 1.09000 * 109.47551 * 119.72693 * 1 2 3 30 30 H 0.96998 * 119.99950 * 359.72183 * 4 2 1 31 31 H 1.09000 * 109.47312 * 299.99122 * 7 5 4 32 32 H 1.08997 * 109.47518 * 59.99805 * 7 5 4 33 33 H 1.09004 * 109.47052 * 179.97438 * 8 7 5 34 34 H 1.08991 * 109.47197 * 60.00105 * 8 7 5 35 35 H 1.00907 * 110.99706 * 29.88362 * 11 9 8 36 36 H 1.08998 * 109.47216 * 185.05252 * 14 12 11 37 37 H 1.09000 * 109.47309 * 305.05820 * 14 12 11 38 38 H 1.09005 * 109.46987 * 65.05476 * 14 12 11 39 39 H 1.09001 * 109.47305 * 55.00278 * 15 12 11 40 40 H 1.09006 * 109.47167 * 175.00381 * 15 12 11 41 41 H 1.09006 * 109.47351 * 300.00158 * 16 15 12 42 42 H 1.08998 * 109.47534 * 59.99926 * 16 15 12 43 43 H 0.96996 * 120.00495 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.47179 * 179.97438 * 25 9 8 45 45 H 1.09004 * 109.47004 * 59.99975 * 25 9 8 46 46 H 1.08997 * 109.47031 * 299.99731 * 26 5 4 47 47 H 1.08994 * 109.47455 * 59.99958 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.6459 -1.1671 -0.0119 6 1 4.0067 -0.3238 -0.6008 7 6 4.1619 -1.0449 1.4232 8 6 5.6919 -1.0454 1.4169 9 6 6.1989 -2.3515 0.8021 10 1 5.8377 -3.1946 1.3911 11 7 7.6678 -2.3524 0.7965 12 6 8.1936 -3.7238 0.8191 13 1 7.5432 -4.3720 0.2318 14 6 8.2454 -4.2266 2.2632 15 6 9.6026 -3.7397 0.2228 16 6 9.5345 -3.3565 -1.2569 17 6 10.9222 -3.3728 -1.8444 18 1 11.7680 -3.6310 -1.2245 19 6 11.1118 -3.0590 -3.1735 20 7 12.3228 -3.0727 -3.6861 21 14 9.6487 -2.6130 -4.2459 22 1 9.4218 -1.1466 -4.1887 23 1 9.9215 -3.0175 -5.6485 24 1 8.4398 -3.3206 -3.7529 25 6 5.6828 -2.4737 -0.6331 26 6 4.1533 -2.4729 -0.6269 27 1 -0.3633 -0.5182 0.8875 28 1 -0.3635 1.0276 0.0050 29 1 -0.3634 -0.5096 -0.8924 30 1 1.6959 -2.0072 -0.0057 31 1 3.8004 -0.1146 1.8614 32 1 3.8011 -1.8882 2.0121 33 1 6.0595 -0.9579 2.4393 34 1 6.0531 -0.2024 0.8280 35 1 8.0326 -1.8125 1.5671 36 1 8.7182 -5.2083 2.2894 37 1 8.8224 -3.5290 2.8703 38 1 7.2323 -4.3005 2.6587 39 1 10.2303 -3.0248 0.7547 40 1 10.0271 -4.7389 0.3202 41 1 8.9067 -4.0715 -1.7888 42 1 9.1100 -2.3574 -1.3543 43 1 12.4563 -2.8516 -4.6210 44 1 6.0443 -3.4040 -1.0712 45 1 6.0441 -1.6307 -1.2221 46 1 3.7925 -3.3161 -0.0380 47 1 3.7857 -2.5600 -1.6493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172493558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -72.717751 kcal Electronic energy + Delta-G solvation = -22879.713606 eV Core-core repulsion = 19674.726212 eV Total energy + Delta-G solvation = -3204.987393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23072 -38.72457 -36.60120 -34.29507 -32.89368 -31.45836 -30.90648 -30.14591 -29.14764 -26.71562 -25.20132 -23.02156 -22.06136 -20.95820 -20.69684 -19.89794 -19.62204 -17.12050 -16.65444 -16.54119 -15.79207 -15.53715 -14.81574 -14.62025 -14.14461 -14.07772 -13.84104 -13.62436 -13.11833 -13.08518 -12.72590 -12.62435 -12.57816 -12.41517 -12.35108 -12.11082 -11.86334 -11.44452 -11.28809 -11.22469 -11.19344 -10.80792 -10.63990 -10.36869 -10.26411 -10.04912 -9.80191 -9.58961 -9.43042 -9.26419 -8.98401 -8.40553 -7.98581 -5.92098 -3.87927 2.39189 2.94767 3.41540 3.47559 3.52909 4.30188 4.44556 4.57650 4.59822 4.60951 4.89639 4.98742 5.00837 5.09319 5.14886 5.25964 5.28385 5.37459 5.38786 5.43826 5.46174 5.49184 5.57868 5.61834 5.75426 5.87810 5.89494 6.00489 6.08927 6.12912 6.20648 6.24532 6.30137 6.30497 6.48818 6.58839 6.75495 7.14093 7.24690 7.41882 7.56383 7.72894 7.78023 7.97026 7.98002 8.68587 9.14341 9.72293 11.21907 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.003868 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.206578 B = 7238.027768 C = 8337.606517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.545 6.545 4 N -0.729 5.729 5 C 0.142 3.858 6 H 0.090 0.910 7 C -0.122 4.122 8 C -0.119 4.119 9 C 0.090 3.910 10 H 0.040 0.960 11 N -0.672 5.672 12 C 0.082 3.918 13 H 0.071 0.929 14 C -0.180 4.180 15 C -0.090 4.090 16 C -0.005 4.005 17 C -0.516 4.516 18 H 0.067 0.933 19 C 0.063 3.937 20 N -0.910 5.910 21 Si 0.882 3.118 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.265 1.265 25 C -0.107 4.107 26 C -0.124 4.124 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.338 0.662 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.006 0.994 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.491 0.611 11.489 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.294 3.706 3 O -0.422 6.422 4 N -0.380 5.380 5 C 0.038 3.962 6 H 0.108 0.892 7 C -0.161 4.161 8 C -0.157 4.157 9 C -0.020 4.020 10 H 0.058 0.942 11 N -0.303 5.303 12 C -0.028 4.028 13 H 0.089 0.911 14 C -0.239 4.239 15 C -0.128 4.128 16 C -0.042 4.042 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.550 5.550 21 Si 0.710 3.290 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.190 1.190 25 C -0.146 4.146 26 C -0.162 4.162 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.907 1.469 10.634 26.207 hybrid contribution -1.051 -0.512 0.284 1.203 sum -24.958 0.957 10.918 27.259 Atomic orbital electron populations 1.21929 0.91894 1.05497 1.04137 1.20826 0.90562 0.83654 0.75514 1.90742 1.70859 1.31398 1.49220 1.46191 1.07567 1.08599 1.75636 1.21073 0.78666 0.99550 0.96923 0.89194 1.21835 0.95799 1.02067 0.96398 1.21682 0.94552 0.98600 1.00888 1.21492 0.88619 0.96187 0.95734 0.94197 1.60541 1.05434 1.13614 1.50723 1.21792 0.98627 0.88530 0.93847 0.91059 1.22526 1.00599 1.02086 0.98662 1.21452 0.92461 1.00227 0.98688 1.19455 0.96801 0.96730 0.91227 1.21275 0.92946 1.45787 0.95399 0.91463 1.25028 0.95478 0.95138 0.98052 1.69928 1.20900 1.50347 1.13852 0.86740 0.83863 0.79163 0.79258 1.20351 1.21870 1.18993 1.21497 0.92295 1.03700 0.97076 1.21798 0.97277 0.96130 1.01010 0.89523 0.89041 0.89447 0.76727 0.91523 0.92078 0.91894 0.90623 0.84317 0.92153 0.92737 0.93784 0.92922 0.93005 0.97620 0.95443 0.92997 0.91096 0.90718 0.91722 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.32 36.01 0.37 -0.57 16 2 C 0.51 4.99 7.90 -10.98 -0.09 4.90 16 3 O -0.55 -8.08 16.75 5.56 0.09 -7.99 16 4 N -0.73 -5.91 5.08 -53.81 -0.27 -6.19 16 5 C 0.14 1.44 2.45 -67.93 -0.17 1.27 16 6 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 7 C -0.12 -1.22 5.49 -26.73 -0.15 -1.36 16 8 C -0.12 -1.29 5.18 -26.73 -0.14 -1.43 16 9 C 0.09 1.09 2.30 -67.71 -0.16 0.93 16 10 H 0.04 0.46 7.10 -51.93 -0.37 0.10 16 11 N -0.67 -9.81 5.51 -99.74 -0.55 -10.36 16 12 C 0.08 1.26 2.40 -67.71 -0.16 1.10 16 13 H 0.07 1.13 7.20 -51.93 -0.37 0.76 16 14 C -0.18 -2.27 9.16 37.15 0.34 -1.93 16 15 C -0.09 -1.78 4.83 -26.73 -0.13 -1.91 16 16 C 0.00 -0.12 3.93 -27.88 -0.11 -0.22 16 17 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 18 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 19 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 20 N -0.91 -28.98 13.96 55.43 0.77 -28.21 16 21 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 25 C -0.11 -1.37 5.42 -26.76 -0.15 -1.51 16 26 C -0.12 -1.19 5.39 -26.76 -0.14 -1.34 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.40 2.01 8.60 -40.82 -0.35 1.66 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.34 4.55 8.02 -39.29 -0.32 4.24 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 38 H 0.04 0.49 7.45 -51.93 -0.39 0.11 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.01 0.14 7.20 -51.93 -0.37 -0.24 16 42 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.07 1.00 7.50 -51.93 -0.39 0.61 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -34.51 367.41 -9.02 -43.53 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.82 Total: 1.46 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.10 Total: -15.76 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.05 Total: -44.76 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.51 -9.02 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172493558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.189 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds