Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99878 * 2 1 4 4 N 1.34781 * 119.99898 * 180.02562 * 2 1 3 5 5 C 1.46919 * 120.63120 * 354.40238 * 4 2 1 6 6 C 1.53187 * 108.77836 * 233.63147 * 5 4 2 7 7 C 1.53047 * 109.30910 * 305.36782 * 6 5 4 8 8 N 1.46902 * 109.45554 * 181.38337 * 7 6 5 9 9 C 1.46892 * 111.00213 * 295.23922 * 8 7 6 10 10 C 1.46907 * 110.99638 * 171.28470 * 8 7 6 11 11 H 1.08998 * 109.46853 * 91.52845 * 10 8 7 12 12 C 1.52997 * 109.47224 * 331.52567 * 10 8 7 13 13 C 1.53005 * 109.47161 * 211.52443 * 10 8 7 14 14 C 1.52996 * 109.46861 * 299.63392 * 13 10 8 15 15 C 1.50703 * 109.46888 * 186.13549 * 14 13 10 16 16 H 1.08002 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00155 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99546 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47529 * 90.00063 * 19 17 15 21 21 H 1.48509 * 109.47103 * 210.00164 * 19 17 15 22 22 H 1.48501 * 109.47574 * 329.99604 * 19 17 15 23 23 C 1.53037 * 109.54054 * 61.36462 * 7 6 5 24 24 C 1.46920 * 120.62759 * 174.42447 * 4 2 1 25 25 H 1.09003 * 109.47085 * 184.85253 * 1 2 3 26 26 H 1.09002 * 109.47201 * 304.84896 * 1 2 3 27 27 H 1.08999 * 109.47415 * 64.85316 * 1 2 3 28 28 H 1.09001 * 109.58687 * 113.84361 * 5 4 2 29 29 H 1.09003 * 109.70822 * 353.49208 * 5 4 2 30 30 H 1.08998 * 109.49863 * 185.41424 * 6 5 4 31 31 H 1.09000 * 109.49829 * 65.31456 * 6 5 4 32 32 H 1.09006 * 109.45898 * 301.35303 * 7 6 5 33 33 H 1.08994 * 109.47164 * 55.11231 * 9 8 7 34 34 H 1.08998 * 109.47319 * 295.11139 * 9 8 7 35 35 H 1.09002 * 109.47149 * 175.11367 * 9 8 7 36 36 H 1.08998 * 109.47404 * 65.19241 * 12 10 8 37 37 H 1.09003 * 109.47519 * 185.19890 * 12 10 8 38 38 H 1.09001 * 109.46965 * 305.19690 * 12 10 8 39 39 H 1.09008 * 109.46670 * 59.63268 * 13 10 8 40 40 H 1.08991 * 109.46816 * 179.63012 * 13 10 8 41 41 H 1.08998 * 109.47365 * 306.13631 * 14 13 10 42 42 H 1.09007 * 109.47170 * 66.14340 * 14 13 10 43 43 H 0.97002 * 119.99882 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.49786 * 58.58227 * 23 7 6 45 45 H 1.08991 * 109.49811 * 178.68208 * 23 7 6 46 46 H 1.08998 * 109.58903 * 246.15458 * 24 4 2 47 47 H 1.08999 * 109.59109 * 6.58638 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4656 -2.4446 0.1222 6 6 2.0718 -3.2398 1.2828 7 6 3.5800 -3.3823 1.0653 8 7 4.1596 -4.1727 2.1595 9 6 4.0295 -3.4700 3.4429 10 6 5.5631 -4.5062 1.8818 11 1 6.2097 -3.7370 2.3041 12 6 5.7799 -4.5809 0.3691 13 6 5.9004 -5.8587 2.5128 14 6 5.6923 -5.7813 4.0265 15 6 6.1665 -7.0615 4.6648 16 1 6.5757 -7.8511 4.0521 17 6 6.0788 -7.2243 6.0312 18 7 5.5810 -6.2625 6.7773 19 14 6.6672 -8.8108 6.8223 20 1 8.1029 -8.6832 7.1794 21 1 5.8736 -9.0761 8.0493 22 1 6.4926 -9.9347 5.8675 23 6 4.2268 -1.9955 1.0400 24 6 3.6448 -1.1863 -0.1234 25 1 -0.3633 -1.0240 0.0869 26 1 -0.3634 0.5872 0.8434 27 1 -0.3634 0.4367 -0.9302 28 1 1.5692 -3.0118 -0.8028 29 1 0.4100 -2.2574 0.3196 30 1 1.6151 -4.2286 1.3241 31 1 1.8874 -2.7139 2.2196 32 1 3.7641 -3.8860 0.1163 33 1 2.9828 -3.2203 3.6159 34 1 4.6219 -2.5554 3.4180 35 1 4.3874 -4.1129 4.2471 36 1 5.6291 -3.5942 -0.0687 37 1 6.7959 -4.9181 0.1638 38 1 5.0691 -5.2837 -0.0655 39 1 5.2492 -6.6268 2.0953 40 1 6.9398 -6.1092 2.3011 41 1 6.2604 -4.9426 4.4290 42 1 4.6331 -5.6391 4.2409 43 1 5.5190 -6.3772 7.7385 44 1 4.0220 -1.4814 1.9791 45 1 5.3038 -2.0988 0.9085 46 1 3.9262 -1.6509 -1.0684 47 1 4.0280 -0.1665 -0.0867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = -25.907144 kcal Electronic energy + Delta-G solvation = -23536.450750 eV Core-core repulsion = 20333.493217 eV Total energy + Delta-G solvation = -3202.957533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53938 -38.94156 -36.48216 -33.76892 -32.38590 -31.88908 -30.51567 -29.92738 -29.04616 -25.71814 -24.95428 -23.91685 -23.29833 -21.65119 -20.39523 -19.35796 -18.64296 -17.30098 -16.39116 -16.06298 -15.83096 -15.53321 -14.84072 -14.65497 -14.34334 -14.32771 -13.79951 -13.49731 -13.33314 -12.82612 -12.60909 -12.56346 -12.32225 -12.27688 -11.97358 -11.93559 -11.61480 -11.44379 -11.23980 -11.14385 -10.95648 -10.75650 -10.70866 -10.51075 -10.36226 -10.21400 -9.90941 -9.59140 -9.11425 -8.84609 -8.81700 -8.26958 -7.73460 -5.95279 -3.95924 2.43889 2.82481 3.34080 3.40458 3.43959 4.19402 4.37407 4.49963 4.53448 4.78506 4.91943 4.93780 5.07005 5.12650 5.14749 5.25332 5.35649 5.40194 5.42407 5.46011 5.57172 5.64211 5.67740 5.73210 5.80433 5.86701 5.94927 6.05482 6.08860 6.17351 6.25502 6.33413 6.41007 6.46283 6.64644 6.75571 6.94484 7.21384 7.25464 7.57106 7.62821 7.74763 7.97236 7.98256 8.06757 8.51828 9.11092 9.67286 11.15841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.003409 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.167495 B = 8212.400724 C = 8558.993875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.512 3.488 3 O -0.553 6.553 4 N -0.611 5.611 5 C 0.103 3.897 6 C -0.129 4.129 7 C 0.077 3.923 8 N -0.518 5.518 9 C 0.001 3.999 10 C 0.080 3.920 11 H 0.040 0.960 12 C -0.158 4.158 13 C -0.098 4.098 14 C 0.020 3.980 15 C -0.518 4.518 16 H 0.052 0.948 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.170 4.170 24 C 0.115 3.885 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.008 0.992 42 H 0.035 0.965 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 8.902 -15.385 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.301 3.699 3 O -0.432 6.432 4 N -0.345 5.345 5 C -0.020 4.020 6 C -0.167 4.167 7 C -0.032 4.032 8 N -0.241 5.241 9 C -0.147 4.147 10 C -0.027 4.027 11 H 0.058 0.942 12 C -0.215 4.215 13 C -0.136 4.136 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.210 4.210 24 C -0.008 4.008 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.492 9.037 -15.160 20.040 hybrid contribution 0.822 -0.158 0.591 1.025 sum -8.670 8.879 -14.569 19.138 Atomic orbital electron populations 1.22039 0.92007 1.04693 1.05180 1.20804 0.90634 0.83097 0.75364 1.90702 1.70710 1.31198 1.50563 1.48218 1.07547 1.06314 1.72414 1.21946 0.96767 0.83921 0.99345 1.22005 0.95775 1.00898 0.98021 1.21878 0.93577 0.91036 0.96677 1.62244 1.17720 1.42537 1.01590 1.23000 1.00630 0.97699 0.93346 1.21816 0.87612 0.99026 0.94284 0.94182 1.22214 1.01751 1.01152 0.96380 1.21636 0.99054 0.93489 0.99421 1.19292 0.97552 0.96226 0.88620 1.21337 1.40549 1.01727 0.91987 0.92973 1.24994 0.95534 0.96381 0.97523 1.69948 1.46043 1.32451 1.05193 0.86651 0.78631 0.84150 0.78886 1.20839 1.21313 1.19957 1.22734 1.00964 0.98054 0.99200 1.21538 0.79214 1.01932 0.98087 0.89748 0.88850 0.88809 0.91129 0.89014 0.89527 0.91257 0.89381 0.92469 0.96425 0.87249 0.92941 0.92486 0.92079 0.92880 0.93451 0.97364 0.94725 0.93160 0.91082 0.90448 0.91625 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 10.11 36.01 0.36 -0.91 16 2 C 0.51 5.89 7.80 -10.98 -0.09 5.80 16 3 O -0.55 -8.75 16.52 5.56 0.09 -8.66 16 4 N -0.61 -6.33 2.97 -172.78 -0.51 -6.84 16 5 C 0.10 0.82 6.30 -3.72 -0.02 0.80 16 6 C -0.13 -1.34 5.23 -26.61 -0.14 -1.48 16 7 C 0.08 0.94 1.66 -67.67 -0.11 0.83 16 8 N -0.52 -8.17 4.43 -226.85 -1.00 -9.18 16 9 C 0.00 0.01 8.09 60.06 0.49 0.50 16 10 C 0.08 1.33 1.91 -67.71 -0.13 1.20 16 11 H 0.04 0.71 7.67 -51.93 -0.40 0.31 16 12 C -0.16 -2.07 7.72 37.16 0.29 -1.78 16 13 C -0.10 -2.00 4.87 -26.73 -0.13 -2.13 16 14 C 0.02 0.50 3.38 -27.88 -0.09 0.40 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 19 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.17 -2.03 4.15 -26.61 -0.11 -2.14 16 24 C 0.12 1.26 6.44 -3.71 -0.02 1.24 16 25 H 0.08 0.42 5.14 -51.93 -0.27 0.15 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.53 5.14 -51.93 -0.27 0.27 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.80 6.49 -51.93 -0.34 0.47 16 32 H 0.09 1.02 5.63 -51.93 -0.29 0.73 16 33 H 0.06 0.89 6.24 -51.93 -0.32 0.57 16 34 H 0.02 0.29 6.45 -51.93 -0.33 -0.05 16 35 H 0.11 2.30 4.29 -51.93 -0.22 2.08 16 36 H 0.05 0.60 5.14 -51.93 -0.27 0.33 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.78 7.53 -51.93 -0.39 0.39 16 39 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.01 0.22 7.92 -51.93 -0.41 -0.19 16 42 H 0.03 0.92 5.86 -51.93 -0.30 0.62 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 45 H 0.08 0.94 6.04 -51.93 -0.31 0.63 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -32.30 344.53 -8.40 -40.69 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.76 Total: -0.89 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.12 Total: -11.10 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.78 Total: -41.96 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.30 -8.40 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.787 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds