Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46756 * 2 1 4 4 C 1.53003 * 109.47019 * 240.00875 * 2 1 3 5 5 C 1.52994 * 109.47022 * 174.99746 * 4 2 1 6 6 C 1.50706 * 109.47145 * 179.97438 * 5 4 2 7 7 H 1.08007 * 119.99359 * 359.97438 * 6 5 4 8 8 C 1.37867 * 120.00359 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99804 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00235 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47279 * 59.99625 * 10 8 6 12 12 H 1.48501 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47139 * 299.99672 * 10 8 6 14 14 N 1.46900 * 109.47471 * 120.00344 * 2 1 3 15 15 C 1.47958 * 110.99926 * 300.00152 * 14 2 1 16 16 C 1.53941 * 86.17952 * 222.41817 * 15 14 2 17 17 N 1.46895 * 113.73473 * 138.08133 * 16 15 14 18 18 C 1.46908 * 110.99904 * 298.23788 * 17 16 15 19 19 C 1.46900 * 111.00161 * 174.28764 * 17 16 15 20 20 H 1.09006 * 111.02041 * 55.77191 * 19 17 16 21 21 C 1.55300 * 111.12725 * 179.97438 * 19 17 16 22 22 C 1.54388 * 102.25097 * 152.04944 * 21 19 17 23 23 O 1.43229 * 107.58863 * 338.64411 * 22 21 19 24 24 C 1.43647 * 109.97394 * 358.28742 * 23 22 21 25 25 C 1.48185 * 111.06755 * 200.56700 * 14 2 1 26 26 H 1.08995 * 109.47519 * 59.99302 * 1 2 3 27 27 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46862 * 299.98811 * 1 2 3 29 29 H 1.09004 * 109.46554 * 294.99934 * 4 2 1 30 30 H 1.09001 * 109.46738 * 54.99227 * 4 2 1 31 31 H 1.09003 * 109.46869 * 299.99530 * 5 4 2 32 32 H 1.08995 * 109.47148 * 59.99948 * 5 4 2 33 33 H 0.97001 * 119.99778 * 180.02562 * 9 8 6 34 34 H 1.08996 * 113.75777 * 108.10259 * 15 14 2 35 35 H 1.08999 * 113.85793 * 336.74657 * 15 14 2 36 36 H 1.08994 * 113.73122 * 269.25959 * 16 15 14 37 37 H 1.09000 * 109.47362 * 289.14965 * 18 17 16 38 38 H 1.08998 * 109.46690 * 49.15129 * 18 17 16 39 39 H 1.09003 * 109.47023 * 169.14766 * 18 17 16 40 40 H 1.09002 * 110.84702 * 33.86166 * 21 19 17 41 41 H 1.08998 * 110.85383 * 270.23974 * 21 19 17 42 42 H 1.08999 * 109.82795 * 98.15939 * 22 21 19 43 43 H 1.08998 * 109.82864 * 219.13221 * 22 21 19 44 44 H 1.09002 * 110.30592 * 143.33769 * 24 23 22 45 45 H 1.08998 * 110.31117 * 265.50861 * 24 23 22 46 46 H 1.08992 * 113.76385 * 23.23997 * 25 14 2 47 47 H 1.09006 * 113.82735 * 251.80909 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 6 4.0672 -1.3238 -2.5441 7 1 3.3686 -1.8049 -3.2129 8 6 5.4183 -1.3600 -2.8160 9 7 6.2688 -0.7738 -2.0018 10 14 6.0409 -2.2404 -4.3413 11 1 5.4483 -1.6147 -5.5505 12 1 7.5209 -2.1357 -4.4038 13 1 5.6486 -3.6715 -4.2816 14 7 2.0198 -0.6926 1.1994 15 6 1.5454 -0.0217 2.4299 16 6 2.9687 -0.2400 2.9742 17 7 3.5061 0.9158 3.7044 18 6 3.6079 2.0909 2.8286 19 6 4.8055 0.5974 4.3112 20 1 5.5113 0.2427 3.5602 21 6 5.3767 1.8177 5.0836 22 6 6.2437 1.1424 6.1679 23 8 5.7718 -0.2007 6.3251 24 6 4.6483 -0.4305 5.4600 25 6 3.4180 -0.3072 1.5034 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8902 29 1 1.7516 -1.7714 -1.2058 30 1 1.6052 -0.2615 -2.1370 31 1 3.8530 0.4373 -1.3574 32 1 3.9994 -1.0726 -0.4262 33 1 7.2194 -0.7990 -2.1933 34 1 0.7792 -0.5806 2.9672 35 1 1.2855 1.0273 2.2879 36 1 3.0927 -1.1787 3.5141 37 1 4.4112 1.9383 2.1078 38 1 2.6660 2.2316 2.2986 39 1 3.8222 2.9746 3.4298 40 1 4.5744 2.4007 5.5358 41 1 5.9881 2.4392 4.4294 42 1 7.2875 1.1333 5.8540 43 1 6.1443 1.6819 7.1098 44 1 4.6763 -1.4462 5.0653 45 1 3.7157 -0.2580 5.9972 46 1 3.7077 0.6580 1.0882 47 1 4.1453 -1.0937 1.3019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -5.670149 kcal Electronic energy + Delta-G solvation = -23587.244949 eV Core-core repulsion = 20385.164958 eV Total energy + Delta-G solvation = -3202.079991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62857 -39.24378 -36.16929 -33.96439 -32.53292 -30.85726 -29.64750 -29.21647 -26.93592 -25.80911 -24.87516 -24.41452 -22.51080 -21.48160 -20.69395 -19.66470 -18.69559 -17.10550 -16.63765 -16.25142 -16.02225 -15.39138 -15.13460 -14.52553 -14.25990 -14.14238 -13.63141 -13.48294 -13.31713 -13.11773 -12.58370 -12.41798 -12.26480 -12.20025 -11.78419 -11.71234 -11.51551 -11.34878 -11.26594 -11.06634 -11.03346 -10.89109 -10.83758 -10.51416 -10.38448 -10.02322 -9.66485 -9.61868 -9.20609 -8.97958 -8.41887 -8.36225 -8.13220 -5.99282 -3.99888 3.33340 3.37499 3.40449 3.51176 3.93908 4.28076 4.37694 4.46880 4.71511 4.80054 4.88683 5.01888 5.10622 5.17225 5.25598 5.36745 5.37355 5.43284 5.48489 5.54123 5.55661 5.65055 5.68857 5.74179 5.75386 5.78654 5.86504 5.95211 5.98534 6.07710 6.19467 6.29034 6.33196 6.42847 6.58689 6.75876 6.82596 6.93554 6.94861 7.06101 7.20649 7.47954 7.69519 7.90130 8.01940 8.46559 9.06422 9.63412 11.11962 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.004609 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.372052 B = 6074.226276 C = 7438.692233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 H 0.038 0.962 4 C -0.101 4.101 5 C 0.015 3.985 6 C -0.517 4.517 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.889 3.111 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.465 5.465 15 C 0.010 3.990 16 C 0.047 3.953 17 N -0.519 5.519 18 C 0.017 3.983 19 C 0.047 3.953 20 H 0.067 0.933 21 C -0.149 4.149 22 C 0.053 3.947 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.015 4.015 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.005 0.995 32 H 0.032 0.968 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.638 6.196 14.728 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 H 0.056 0.944 4 C -0.139 4.139 5 C -0.021 4.021 6 C -0.556 4.556 7 H 0.070 0.930 8 C -0.143 4.143 9 N -0.537 5.537 10 Si 0.717 3.283 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.189 5.189 15 C -0.119 4.119 16 C -0.062 4.062 17 N -0.243 5.243 18 C -0.131 4.131 19 C -0.062 4.062 20 H 0.085 0.915 21 C -0.187 4.187 22 C -0.024 4.024 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.860 5.519 15.133 17.141 hybrid contribution 1.073 0.466 -1.821 2.164 sum -4.788 5.985 13.312 15.361 Atomic orbital electron populations 1.21846 0.95387 1.02068 1.00772 1.22285 0.94538 0.95980 0.93131 0.94367 1.21631 0.99931 0.99206 0.93108 1.19326 0.88840 0.96368 0.97610 1.21258 0.91908 1.34024 1.08393 0.92975 1.24980 0.97042 0.95659 0.96629 1.69942 1.02292 1.44366 1.37141 0.86700 0.77565 0.80337 0.83655 1.20339 1.21336 1.20254 1.68549 1.03959 1.45847 1.00507 1.24009 0.96536 0.98548 0.92834 1.23893 0.95689 0.93692 0.92966 1.62086 1.23489 1.05160 1.33520 1.22508 1.01732 0.92742 0.96118 1.23328 0.90875 0.95457 0.96509 0.91515 1.23177 0.99855 0.98046 0.97617 1.23062 0.98036 0.83017 0.98259 1.88404 1.48540 1.29693 1.63764 1.23364 0.89692 0.98813 0.89669 1.24733 0.93493 1.02054 0.94177 0.92558 0.92119 0.93513 0.92564 0.93347 0.97640 0.94958 0.93117 0.89677 0.91391 0.87399 0.94222 0.91246 0.91356 0.89613 0.90085 0.91296 0.91464 0.89729 0.91093 0.90237 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.09 37.16 0.34 -1.70 16 2 C 0.05 0.85 2.00 -67.71 -0.14 0.72 16 3 H 0.04 0.68 7.63 -51.93 -0.40 0.28 16 4 C -0.10 -2.13 4.83 -26.73 -0.13 -2.25 16 5 C 0.02 0.39 4.05 -27.88 -0.11 0.28 16 6 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.47 -7.71 5.97 -230.22 -1.37 -9.09 16 15 C 0.01 0.13 6.18 -2.76 -0.02 0.12 16 16 C 0.05 0.62 3.90 -69.40 -0.27 0.35 16 17 N -0.52 -6.25 4.79 -225.61 -1.08 -7.33 16 18 C 0.02 0.20 7.82 60.07 0.47 0.67 16 19 C 0.05 0.56 2.74 -65.47 -0.18 0.38 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.46 5.31 -24.78 -0.13 -1.59 16 22 C 0.05 0.53 7.79 37.89 0.30 0.83 16 23 O -0.39 -4.93 11.36 -35.23 -0.40 -5.33 16 24 C 0.06 0.71 6.60 38.19 0.25 0.97 16 25 C -0.01 -0.25 4.87 -2.63 -0.01 -0.26 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.58 7.02 -51.93 -0.36 0.22 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.03 0.85 4.89 -51.93 -0.25 0.60 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 36 H 0.11 1.41 7.11 -51.93 -0.37 1.04 16 37 H 0.04 0.54 6.73 -51.93 -0.35 0.19 16 38 H 0.07 0.83 6.11 -51.93 -0.32 0.52 16 39 H 0.07 0.69 7.28 -51.93 -0.38 0.31 16 40 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.97 7.81 -51.93 -0.41 0.56 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.43 4.99 -51.93 -0.26 1.17 16 47 H 0.10 1.89 6.87 -51.93 -0.36 1.53 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -30.08 352.04 -10.25 -40.32 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.37 Total: 0.29 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.04 Total: -15.03 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -1.72 Total: -42.40 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.40 Total: -5.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.08 -10.25 -40.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.654 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds