Wall clock time and date at job start Tue Mar 31 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47265 * 2 1 4 4 C 1.53001 * 109.46832 * 119.99906 * 2 1 3 5 5 C 1.53004 * 109.46902 * 184.99668 * 4 2 1 6 6 C 1.50701 * 109.46918 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00084 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00014 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99849 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47401 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47299 * 120.00468 * 10 8 6 13 13 H 1.48504 * 109.47201 * 240.00530 * 10 8 6 14 14 N 1.46905 * 109.46837 * 239.99681 * 2 1 3 15 15 C 1.47962 * 110.99918 * 62.08990 * 14 2 1 16 16 C 1.53933 * 86.17867 * 222.41483 * 15 14 2 17 17 N 1.46900 * 113.73269 * 138.08115 * 16 15 14 18 18 C 1.46900 * 110.99941 * 300.92924 * 17 16 15 19 19 C 1.46902 * 110.99873 * 176.97586 * 17 16 15 20 20 H 1.08994 * 110.45562 * 307.58712 * 19 17 16 21 21 C 1.54508 * 110.50808 * 184.98190 * 19 17 16 22 22 C 1.54486 * 104.18611 * 241.28549 * 21 19 17 23 23 O 1.44647 * 104.69307 * 336.19168 * 22 21 19 24 24 C 1.44424 * 105.36847 * 40.34681 * 23 22 21 25 25 C 1.47959 * 110.99975 * 322.72957 * 14 2 1 26 26 H 1.09003 * 109.46831 * 309.45369 * 1 2 3 27 27 H 1.09004 * 109.46640 * 69.44787 * 1 2 3 28 28 H 1.08996 * 109.47642 * 189.44527 * 1 2 3 29 29 H 1.08996 * 109.46846 * 304.99995 * 4 2 1 30 30 H 1.08998 * 109.47158 * 64.99897 * 4 2 1 31 31 H 1.08994 * 109.47136 * 299.99693 * 5 4 2 32 32 H 1.08998 * 109.47026 * 60.00148 * 5 4 2 33 33 H 0.97002 * 119.99782 * 179.97438 * 9 8 6 34 34 H 1.09001 * 113.75561 * 108.09834 * 15 14 2 35 35 H 1.08993 * 113.75954 * 336.73076 * 15 14 2 36 36 H 1.09001 * 113.73667 * 269.25902 * 16 15 14 37 37 H 1.09004 * 109.47347 * 300.66623 * 18 17 16 38 38 H 1.08999 * 109.47489 * 60.66473 * 18 17 16 39 39 H 1.09000 * 109.47303 * 180.66641 * 18 17 16 40 40 H 1.08994 * 110.51502 * 359.97438 * 21 19 17 41 41 H 1.08999 * 110.51170 * 122.57947 * 21 19 17 42 42 H 1.09002 * 110.36856 * 94.91757 * 22 21 19 43 43 H 1.08995 * 110.37665 * 217.26110 * 22 21 19 44 44 H 1.09005 * 110.36806 * 200.73675 * 24 23 22 45 45 H 1.09002 * 110.46984 * 78.44561 * 24 23 22 46 46 H 1.08997 * 113.76020 * 23.26456 * 25 14 2 47 47 H 1.09000 * 113.75840 * 251.90052 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3137 6 6 4.0670 -1.3232 2.5445 7 1 3.3686 -1.8036 3.2136 8 6 5.4184 -1.3603 2.8159 9 7 6.2689 -0.7757 2.0008 10 14 6.0409 -2.2408 4.3411 11 1 4.8909 -2.8123 5.0869 12 1 6.9627 -3.3339 3.9401 13 1 6.7642 -1.2767 5.2087 14 7 2.0196 -0.6926 -1.1995 15 6 1.5867 0.0068 -2.4294 16 6 1.2858 -1.3926 -2.9958 17 7 0.0267 -1.4674 -3.7488 18 6 -1.1144 -1.0865 -2.9057 19 6 -0.1656 -2.8066 -4.3212 20 1 0.7130 -3.1065 -4.8923 21 6 -1.4273 -2.8383 -5.2124 22 6 -2.3434 -3.8813 -4.5347 23 8 -1.4426 -4.7284 -3.7843 24 6 -0.4671 -3.8333 -3.2071 25 6 1.1600 -1.8502 -1.5314 26 1 -0.3633 0.6531 0.7935 27 1 -0.3633 0.3608 -0.9623 28 1 -0.3634 -1.0137 0.1686 29 1 1.6053 -0.2617 2.1369 30 1 1.7515 -1.7715 1.2056 31 1 3.9994 -1.0730 0.4261 32 1 3.8532 0.4369 1.3573 33 1 7.2196 -0.8014 2.1919 34 1 2.3938 0.5256 -2.9467 35 1 0.6998 0.6256 -2.2936 36 1 2.1256 -1.8410 -3.5266 37 1 -1.1699 -1.7542 -2.0460 38 1 -0.9850 -0.0605 -2.5611 39 1 -2.0350 -1.1620 -3.4845 40 1 -1.9087 -1.8605 -5.2280 41 1 -1.1725 -3.1540 -6.2241 42 1 -3.0475 -3.3889 -3.8638 43 1 -2.8773 -4.4628 -5.2862 44 1 0.4375 -4.3794 -2.9395 45 1 -0.8803 -3.3327 -2.3314 46 1 0.1482 -1.7744 -1.1329 47 1 1.6260 -2.8150 -1.3312 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:23 Heat of formation + Delta-G solvation = 13.338352 kcal Electronic energy + Delta-G solvation = -23666.892889 eV Core-core repulsion = 20465.637168 eV Total energy + Delta-G solvation = -3201.255721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23126 -39.44127 -36.12220 -33.99832 -32.40462 -30.96797 -29.50247 -28.91718 -26.85535 -26.38104 -25.73277 -24.55726 -23.00306 -21.34343 -20.45596 -19.45313 -18.70858 -17.45095 -16.74672 -16.19248 -16.09717 -15.80128 -15.31212 -14.72966 -14.51989 -14.26958 -14.02758 -13.50726 -13.22471 -13.13123 -12.74933 -12.47301 -12.17107 -12.12244 -12.05318 -11.77466 -11.70939 -11.37701 -11.19334 -11.07430 -11.03261 -10.96394 -10.87004 -10.44929 -10.36312 -10.13250 -10.03092 -9.65506 -9.24414 -8.89275 -8.45548 -8.29789 -8.16327 -5.89214 -3.90698 3.35673 3.39517 3.42938 3.46961 3.91725 4.25538 4.29212 4.45014 4.53324 4.62531 4.69540 4.79534 4.90020 4.96559 5.00185 5.12196 5.23391 5.24610 5.39894 5.42000 5.44148 5.46155 5.52762 5.55385 5.59047 5.64131 5.70019 5.76664 5.87213 5.91020 6.01935 6.07811 6.19215 6.32323 6.45653 6.60727 6.64232 6.80087 6.89320 6.99259 7.25966 7.46407 7.83694 8.05473 8.20506 8.56055 9.18236 9.72068 11.21846 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.003568 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.609031 B = 7844.932724 C = 8226.769697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.048 3.952 3 H 0.078 0.922 4 C -0.096 4.096 5 C 0.029 3.971 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.449 5.449 15 C 0.003 3.997 16 C 0.056 3.944 17 N -0.517 5.517 18 C 0.002 3.998 19 C 0.054 3.946 20 H 0.099 0.901 21 C -0.150 4.150 22 C 0.041 3.959 23 O -0.374 6.374 24 C 0.009 3.991 25 C -0.048 4.048 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 -1.382 -14.928 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.062 4.062 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.171 5.171 15 C -0.127 4.127 16 C -0.052 4.052 17 N -0.240 5.240 18 C -0.146 4.146 19 C -0.055 4.055 20 H 0.117 0.883 21 C -0.188 4.188 22 C -0.036 4.036 23 O -0.292 6.292 24 C -0.070 4.070 25 C -0.178 4.178 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.884 -1.330 -15.174 22.739 hybrid contribution -0.412 -0.589 1.563 1.721 sum -17.295 -1.918 -13.610 22.092 Atomic orbital electron populations 1.22700 0.98663 1.01723 1.01629 1.22275 0.91431 0.99255 0.93188 0.90344 1.21586 1.00786 0.98046 0.92924 1.19003 0.88071 0.96666 0.97064 1.21364 0.91879 1.34064 1.08408 0.93094 1.25003 0.97133 0.95777 0.96534 1.69991 1.02132 1.44355 1.36857 0.86623 0.78825 0.79542 0.83500 1.19892 1.21094 1.21129 1.68792 1.43748 1.04092 1.00504 1.24148 1.00173 0.95686 0.92659 1.23747 0.92005 0.97734 0.91760 1.62281 1.02441 1.24349 1.34901 1.22815 0.93885 1.01296 0.96572 1.23125 0.99397 0.87799 0.95201 0.88337 1.23016 0.95603 1.00479 0.99703 1.23492 0.92887 0.92353 0.94822 1.89169 1.41720 1.30342 1.68001 1.24309 0.93240 0.92475 0.96927 1.24953 0.98588 0.98121 0.96129 0.92112 0.92603 0.92391 0.93449 0.93687 0.95062 0.97301 0.93262 0.89252 0.90952 0.86971 0.94084 0.90595 0.91243 0.89433 0.90205 0.92509 0.89085 0.88756 0.91475 0.89467 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 7.76 37.16 0.29 -2.19 16 2 C 0.05 0.80 2.41 -67.71 -0.16 0.64 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.10 -2.01 4.72 -26.73 -0.13 -2.13 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 N -0.45 -7.36 5.64 -230.45 -1.30 -8.66 16 15 C 0.00 0.03 7.25 -2.77 -0.02 0.01 16 16 C 0.06 0.66 3.93 -69.41 -0.27 0.39 16 17 N -0.52 -5.12 4.88 -226.44 -1.11 -6.23 16 18 C 0.00 0.02 7.41 60.06 0.45 0.46 16 19 C 0.05 0.50 3.20 -66.14 -0.21 0.29 16 20 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 21 C -0.15 -1.15 6.17 -25.16 -0.16 -1.30 16 22 C 0.04 0.34 7.65 37.94 0.29 0.63 16 23 O -0.37 -4.27 11.65 -35.23 -0.41 -4.68 16 24 C 0.01 0.09 5.81 37.93 0.22 0.31 16 25 C -0.05 -0.65 5.13 -2.77 -0.01 -0.66 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.63 3.72 -51.93 -0.19 0.44 16 28 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.95 7.90 -51.93 -0.41 0.54 16 31 H 0.03 0.90 7.75 -51.93 -0.40 0.49 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.87 4.61 -51.93 -0.24 0.63 16 36 H 0.11 1.36 8.06 -51.93 -0.42 0.94 16 37 H 0.04 0.39 3.89 -51.93 -0.20 0.19 16 38 H 0.08 0.70 4.73 -51.93 -0.25 0.46 16 39 H 0.07 0.54 6.31 -51.93 -0.33 0.21 16 40 H 0.09 0.63 6.57 -51.93 -0.34 0.29 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.71 4.82 -51.93 -0.25 0.46 16 46 H 0.09 1.09 2.16 -51.93 -0.11 0.98 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -31.77 339.61 -9.91 -41.68 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.66 Total: -0.71 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -0.27 Total: -16.82 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -1.67 Total: -41.79 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.41 Total: -4.68 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.77 -9.91 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.018 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds