Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47274 * 2 1 4 4 C 1.53012 * 109.46816 * 120.00108 * 2 1 3 5 5 C 1.52994 * 109.46835 * 184.99925 * 4 2 1 6 6 C 1.50704 * 109.47246 * 179.97438 * 5 4 2 7 7 H 1.07994 * 119.99545 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00138 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99730 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47410 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47101 * 120.00425 * 10 8 6 13 13 H 1.48503 * 109.46573 * 239.99847 * 10 8 6 14 14 N 1.46899 * 109.47000 * 239.99596 * 2 1 3 15 15 C 1.47958 * 110.99927 * 63.69234 * 14 2 1 16 16 C 1.53935 * 86.18214 * 222.41488 * 15 14 2 17 17 N 1.46893 * 113.73828 * 138.07354 * 16 15 14 18 18 C 1.46904 * 110.99781 * 56.04781 * 17 16 15 19 19 C 1.46902 * 111.00322 * 179.97438 * 17 16 15 20 20 H 1.09005 * 110.45302 * 52.86195 * 19 17 16 21 21 C 1.54504 * 110.51130 * 175.46167 * 19 17 16 22 22 C 1.54482 * 104.06106 * 118.64932 * 21 19 17 23 23 O 1.44419 * 104.80302 * 23.97786 * 22 21 19 24 24 C 1.44426 * 105.27556 * 319.48601 * 23 22 21 25 25 C 1.47953 * 111.00271 * 324.32838 * 14 2 1 26 26 H 1.09000 * 109.47262 * 193.28973 * 1 2 3 27 27 H 1.08998 * 109.47241 * 313.28740 * 1 2 3 28 28 H 1.08992 * 109.47199 * 73.28998 * 1 2 3 29 29 H 1.09004 * 109.46874 * 304.99605 * 4 2 1 30 30 H 1.08998 * 109.47384 * 64.99967 * 4 2 1 31 31 H 1.08998 * 109.47711 * 299.99894 * 5 4 2 32 32 H 1.09001 * 109.47512 * 60.00169 * 5 4 2 33 33 H 0.96997 * 120.00082 * 180.02562 * 9 8 6 34 34 H 1.08996 * 113.76294 * 108.08942 * 15 14 2 35 35 H 1.09011 * 113.85571 * 336.73987 * 15 14 2 36 36 H 1.09002 * 113.72920 * 269.25837 * 16 15 14 37 37 H 1.08995 * 109.46900 * 52.78216 * 18 17 16 38 38 H 1.09004 * 109.47033 * 172.78542 * 18 17 16 39 39 H 1.08994 * 109.47002 * 292.78137 * 18 17 16 40 40 H 1.09003 * 110.51151 * 237.28707 * 21 19 17 41 41 H 1.08995 * 110.51513 * 0.02562 * 21 19 17 42 42 H 1.08999 * 110.37298 * 142.80813 * 22 21 19 43 43 H 1.08998 * 110.36994 * 265.14366 * 22 21 19 44 44 H 1.09000 * 110.37756 * 281.68134 * 24 23 22 45 45 H 1.09002 * 110.37370 * 159.34172 * 24 23 22 46 46 H 1.09000 * 113.75985 * 23.25988 * 25 14 2 47 47 H 1.09004 * 113.75877 * 251.89660 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.6134 1.3138 6 6 4.0670 -1.3233 2.5446 7 1 3.3686 -1.8037 3.2136 8 6 5.4183 -1.3603 2.8159 9 7 6.2690 -0.7756 2.0009 10 14 6.0409 -2.2409 4.3412 11 1 4.8909 -2.8113 5.0875 12 1 6.9627 -3.3339 3.9401 13 1 6.7642 -1.2767 5.2087 14 7 2.0196 -0.6926 -1.1994 15 6 1.6192 0.0277 -2.4282 16 6 1.2940 -1.3591 -3.0117 17 7 0.0437 -1.3983 -3.7817 18 6 0.0600 -0.4041 -4.8631 19 6 -0.2073 -2.7459 -4.3100 20 1 -0.1616 -3.4837 -3.5090 21 6 -1.5782 -2.8022 -5.0204 22 6 -1.2301 -3.1720 -6.4793 23 8 0.0478 -3.8397 -6.3959 24 6 0.8069 -3.0882 -5.4238 25 6 1.1385 -1.8271 -1.5535 26 1 -0.3634 -1.0001 0.2362 27 1 -0.3633 0.7046 0.7480 28 1 -0.3633 0.2955 -0.9842 29 1 1.6053 -0.2617 2.1371 30 1 1.7516 -1.7716 1.2057 31 1 3.9994 -1.0729 0.4261 32 1 3.8532 0.4368 1.3575 33 1 7.2196 -0.8020 2.1916 34 1 2.4445 0.5328 -2.9299 35 1 0.7449 0.6661 -2.2999 36 1 2.1304 -1.8216 -3.5358 37 1 0.9616 -0.5333 -5.4618 38 1 -0.8181 -0.5396 -5.4946 39 1 0.0486 0.5983 -4.4352 40 1 -2.2094 -3.5696 -4.5721 41 1 -2.0696 -1.8302 -4.9800 42 1 -1.9832 -3.8442 -6.8904 43 1 -1.1492 -2.2726 -7.0897 44 1 1.2003 -2.1759 -5.8723 45 1 1.6187 -3.6960 -5.0240 46 1 0.1235 -1.7320 -1.1675 47 1 1.5798 -2.8041 -1.3564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172503035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = 2.299965 kcal Electronic energy + Delta-G solvation = -23231.805305 eV Core-core repulsion = 20030.070924 eV Total energy + Delta-G solvation = -3201.734381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79288 -39.55759 -36.24699 -34.02719 -32.37111 -31.00470 -29.28701 -28.96858 -27.29511 -25.78637 -25.28939 -24.61791 -23.12469 -21.35973 -20.50444 -19.51155 -18.74404 -17.31771 -16.65216 -16.12828 -15.95784 -15.82203 -15.34105 -14.67924 -14.41097 -14.32514 -13.83262 -13.49596 -13.33095 -13.21125 -12.79109 -12.49160 -12.27751 -12.04189 -11.95077 -11.73629 -11.56221 -11.43750 -11.28221 -11.10169 -11.02436 -10.91504 -10.59138 -10.43246 -10.38888 -10.13762 -10.04346 -9.61814 -9.22203 -8.87396 -8.49952 -8.29386 -8.14619 -5.87677 -3.88933 3.36792 3.41735 3.43991 3.48198 3.91032 4.27772 4.29472 4.42275 4.52668 4.54871 4.69729 4.82592 4.91482 5.06965 5.09922 5.25164 5.32311 5.33897 5.37632 5.40239 5.47735 5.48574 5.50596 5.56325 5.62799 5.71907 5.76165 5.78313 5.80849 5.96856 6.06308 6.13815 6.29481 6.39740 6.42981 6.65875 6.71220 6.80251 6.93136 7.04890 7.30159 7.51000 7.85837 8.07992 8.22761 8.58243 9.20197 9.73732 11.23444 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.003265 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.799158 B = 8572.732357 C = 8987.894032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.076 0.924 4 C -0.095 4.095 5 C 0.028 3.972 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.454 5.454 15 C 0.005 3.995 16 C 0.045 3.955 17 N -0.519 5.519 18 C 0.014 3.986 19 C 0.053 3.947 20 H 0.099 0.901 21 C -0.150 4.150 22 C 0.042 3.958 23 O -0.374 6.374 24 C 0.009 3.991 25 C 0.007 3.993 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.008 0.992 33 H 0.257 0.743 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -0.569 -16.729 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.061 4.061 3 H 0.094 0.906 4 C -0.133 4.133 5 C -0.009 4.009 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.177 5.177 15 C -0.124 4.124 16 C -0.063 4.063 17 N -0.243 5.243 18 C -0.134 4.134 19 C -0.056 4.056 20 H 0.117 0.883 21 C -0.188 4.188 22 C -0.035 4.035 23 O -0.292 6.292 24 C -0.069 4.069 25 C -0.122 4.122 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.241 -0.706 -16.379 23.077 hybrid contribution 0.251 -0.246 0.378 0.516 sum -15.989 -0.952 -16.001 22.641 Atomic orbital electron populations 1.22516 0.98101 1.01881 1.01479 1.22262 0.91789 0.98997 0.93004 0.90588 1.21588 1.00623 0.98149 0.92969 1.19009 0.88219 0.96611 0.97025 1.21375 0.91863 1.33953 1.08392 0.93057 1.25007 0.97147 0.95804 0.96533 1.69991 1.02106 1.44441 1.36901 0.86621 0.78821 0.79530 0.83517 1.19871 1.21119 1.21164 1.68813 1.43575 1.04830 1.00433 1.24048 0.99954 0.95198 0.93175 1.23690 0.90116 0.98327 0.94214 1.62527 1.34372 1.03897 1.23547 1.22467 1.00613 0.96451 0.93833 1.23112 0.94072 0.91682 0.96737 0.88284 1.23018 0.97267 1.03382 0.95110 1.23461 0.86330 0.97321 0.96425 1.89138 1.26371 1.51986 1.61671 1.24225 0.96045 0.96936 0.89730 1.24175 0.98262 0.97406 0.92397 0.92228 0.92517 0.92513 0.93446 0.93563 0.95096 0.97357 0.93294 0.89910 0.90543 0.90681 0.95025 0.91363 0.90922 0.90163 0.89375 0.89096 0.92523 0.91694 0.88892 0.89235 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 7.75 37.16 0.29 -2.21 16 2 C 0.05 0.83 2.39 -67.71 -0.16 0.67 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.10 -2.02 4.71 -26.73 -0.13 -2.14 16 5 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 6 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -27.72 13.29 55.43 0.74 -26.99 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 N -0.45 -7.56 5.63 -230.43 -1.30 -8.85 16 15 C 0.01 0.07 6.41 -2.77 -0.02 0.05 16 16 C 0.04 0.53 3.21 -69.40 -0.22 0.31 16 17 N -0.52 -5.11 4.71 -226.43 -1.07 -6.18 16 18 C 0.01 0.12 8.32 60.07 0.50 0.62 16 19 C 0.05 0.50 3.18 -66.15 -0.21 0.29 16 20 H 0.10 0.99 8.06 -51.93 -0.42 0.57 16 21 C -0.15 -1.15 6.10 -25.16 -0.15 -1.30 16 22 C 0.04 0.33 7.57 37.94 0.29 0.61 16 23 O -0.37 -4.11 11.65 -35.23 -0.41 -4.52 16 24 C 0.01 0.09 6.17 37.93 0.23 0.32 16 25 C 0.01 0.09 7.10 -2.77 -0.02 0.07 16 26 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.71 5.85 -51.93 -0.30 0.41 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 7.97 -51.93 -0.41 0.56 16 31 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.94 5.82 -51.92 -0.30 0.63 16 36 H 0.08 0.94 7.45 -51.93 -0.39 0.55 16 37 H 0.03 0.27 6.29 -51.93 -0.33 -0.06 16 38 H 0.07 0.49 6.02 -51.93 -0.31 0.18 16 39 H 0.07 0.60 7.30 -51.93 -0.38 0.22 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.63 6.60 -51.93 -0.34 0.29 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.39 8.06 -51.93 -0.42 -0.02 16 44 H 0.07 0.63 5.59 -51.93 -0.29 0.34 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.20 4.98 -51.93 -0.26 0.94 16 47 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -31.77 352.16 -10.15 -41.91 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.25 Total: -1.93 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.15 Total: -15.98 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -1.63 Total: -42.02 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.41 Total: -4.52 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.77 -10.15 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172503035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.214 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds