Wall clock time and date at job start Tue Mar 31 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46679 * 2 1 4 4 C 1.52998 * 109.47346 * 119.99836 * 2 1 3 5 5 C 1.52994 * 109.47448 * 184.99964 * 4 2 1 6 6 C 1.50699 * 109.47378 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99524 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99890 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00219 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99640 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47244 * 90.00026 * 10 8 6 12 12 H 1.48505 * 109.46821 * 210.00216 * 10 8 6 13 13 H 1.48504 * 109.47109 * 329.99820 * 10 8 6 14 14 N 1.46893 * 109.46997 * 240.00060 * 2 1 3 15 15 C 1.47850 * 110.99949 * 303.05262 * 14 2 1 16 16 C 1.55113 * 104.90702 * 146.24064 * 15 14 2 17 17 C 1.55140 * 101.56005 * 323.15900 * 16 15 14 18 18 H 1.09004 * 110.70258 * 276.96596 * 17 16 15 19 19 N 1.46894 * 110.70632 * 153.90698 * 17 16 15 20 20 C 1.47022 * 110.99855 * 182.21742 * 19 17 16 21 21 C 1.53095 * 109.25787 * 177.60757 * 20 19 17 22 22 O 1.43014 * 109.26030 * 56.84856 * 21 20 19 23 23 C 1.43017 * 113.73864 * 301.33061 * 22 21 20 24 24 C 1.47012 * 111.00366 * 58.58618 * 19 17 16 25 25 C 1.47444 * 111.00358 * 63.89329 * 14 2 1 26 26 H 1.08997 * 109.47553 * 187.14753 * 1 2 3 27 27 H 1.09005 * 109.47110 * 307.14612 * 1 2 3 28 28 H 1.08999 * 109.47198 * 67.14457 * 1 2 3 29 29 H 1.08998 * 109.47019 * 305.00369 * 4 2 1 30 30 H 1.09000 * 109.47097 * 64.99768 * 4 2 1 31 31 H 1.09001 * 109.46902 * 299.99958 * 5 4 2 32 32 H 1.09000 * 109.47132 * 59.99826 * 5 4 2 33 33 H 0.96998 * 120.00045 * 180.02562 * 9 8 6 34 34 H 1.09008 * 110.36882 * 265.19283 * 15 14 2 35 35 H 1.08995 * 110.37197 * 27.41874 * 15 14 2 36 36 H 1.08999 * 111.15069 * 205.04549 * 16 15 14 37 37 H 1.09011 * 110.92251 * 81.16505 * 16 15 14 38 38 H 1.09002 * 109.50586 * 57.67080 * 20 19 17 39 39 H 1.09002 * 109.50742 * 297.54230 * 20 19 17 40 40 H 1.08997 * 109.50582 * 176.78403 * 21 20 19 41 41 H 1.09007 * 109.50703 * 296.87151 * 21 20 19 42 42 H 1.08997 * 109.50811 * 178.60156 * 23 22 21 43 43 H 1.08999 * 109.50414 * 298.73215 * 23 22 21 44 44 H 1.09002 * 109.50877 * 62.45396 * 24 19 17 45 45 H 1.09008 * 109.53890 * 302.34929 * 24 19 17 46 46 H 1.09002 * 109.89253 * 117.33488 * 25 14 2 47 47 H 1.09005 * 109.88582 * 356.14842 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 6 4.0672 -1.3242 2.5438 7 1 3.3687 -1.8045 3.2129 8 6 5.4186 -1.3613 2.8150 9 7 6.2691 -0.7759 2.0004 10 14 6.0414 -2.2431 4.3394 11 1 6.3210 -3.6638 4.0100 12 1 7.2879 -1.5904 4.8142 13 1 5.0103 -2.1759 5.4060 14 7 2.0196 -0.6925 -1.1994 15 6 1.4864 -2.0696 -1.2709 16 6 1.3017 -2.3479 -2.7856 17 6 0.8304 -0.9626 -3.3010 18 1 -0.2417 -0.8388 -3.1480 19 7 1.1740 -0.7915 -4.7189 20 6 0.7772 0.5398 -5.2002 21 6 1.2063 0.6970 -6.6614 22 8 0.6273 -0.3545 -7.4388 23 6 0.9932 -1.6649 -6.9980 24 6 0.5619 -1.8460 -5.5403 25 6 1.6247 0.0279 -2.4237 26 1 -0.3634 -1.0196 0.1279 27 1 -0.3633 0.6206 0.8192 28 1 -0.3633 0.3991 -0.9470 29 1 1.6054 -0.2617 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0728 0.4260 32 1 3.8532 0.4370 1.3573 33 1 7.2198 -0.8024 2.1910 34 1 2.1968 -2.7744 -0.8384 35 1 0.5284 -2.1328 -0.7549 36 1 0.5392 -3.1079 -2.9557 37 1 2.2468 -2.6351 -3.2467 38 1 1.2619 1.3053 -4.5942 39 1 -0.3050 0.6464 -5.1252 40 1 0.8639 1.6602 -7.0396 41 1 2.2930 0.6447 -6.7293 42 1 0.4967 -2.4099 -7.6197 43 1 2.0736 -1.7866 -7.0758 44 1 -0.5237 -1.7776 -5.4707 45 1 0.8887 -2.8225 -5.1826 46 1 2.5127 0.3664 -2.9576 47 1 0.9968 0.8808 -2.1659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:43 Heat of formation + Delta-G solvation = -38.206556 kcal Electronic energy + Delta-G solvation = -23324.365883 eV Core-core repulsion = 20120.875007 eV Total energy + Delta-G solvation = -3203.490876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.20431 -38.88500 -36.05452 -33.77905 -32.41811 -31.53412 -29.84348 -28.77104 -28.47471 -25.98827 -24.90161 -24.31115 -22.14405 -21.19021 -20.76727 -20.15476 -18.85059 -17.08874 -16.30770 -16.24194 -15.91222 -15.32352 -15.11865 -15.04790 -14.84687 -14.41490 -13.81497 -13.74156 -13.39817 -12.76549 -12.67973 -12.56098 -12.23788 -12.04698 -11.86696 -11.72011 -11.62665 -11.42347 -11.14856 -10.96407 -10.85674 -10.77880 -10.74767 -10.55379 -10.42640 -10.12763 -9.88761 -9.60969 -9.18266 -8.86996 -8.59020 -8.21794 -7.74524 -5.86981 -3.88562 3.37756 3.43843 3.46910 3.47067 3.66127 4.33820 4.44946 4.54910 4.68889 4.74590 4.90654 4.92138 5.00150 5.02553 5.12807 5.28069 5.31202 5.39103 5.41230 5.48198 5.51088 5.54508 5.55456 5.64995 5.65952 5.71258 5.77538 5.85628 6.08023 6.10503 6.16309 6.31206 6.33857 6.42582 6.66133 6.74709 6.87768 6.89401 6.90635 7.29876 7.43971 7.59143 7.86268 8.08452 8.23954 8.58266 9.20488 9.74024 11.23932 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.003313 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.993745 B = 8449.193131 C = 8728.877412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.077 0.923 4 C -0.100 4.100 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 N -0.503 5.503 15 C 0.041 3.959 16 C -0.121 4.121 17 C 0.064 3.936 18 H 0.044 0.956 19 N -0.523 5.523 20 C 0.016 3.984 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.051 3.949 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.009 0.991 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 0.334 -16.657 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 H 0.095 0.905 4 C -0.138 4.138 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.226 5.226 15 C -0.087 4.087 16 C -0.159 4.159 17 C -0.045 4.045 18 H 0.062 0.938 19 N -0.249 5.249 20 C -0.112 4.112 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.077 4.077 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.716 0.364 -16.831 21.098 hybrid contribution -1.239 -0.383 1.228 1.786 sum -13.955 -0.019 -15.603 20.933 Atomic orbital electron populations 1.22546 0.99044 1.01722 1.01086 1.22054 0.90879 0.98774 0.91673 0.90458 1.21680 1.00862 0.98208 0.93081 1.18997 0.88016 0.96726 0.97010 1.21334 0.91839 1.34110 1.08517 0.93167 1.24996 0.97149 0.95768 0.96477 1.69978 1.02161 1.44190 1.36939 0.86692 0.78287 0.79841 0.83720 1.20799 1.21344 1.20070 1.63785 1.56682 1.01378 1.00769 1.23097 0.99146 0.91766 0.94657 1.22823 1.01875 0.94979 0.96203 1.22954 0.97007 0.97447 0.87110 0.93843 1.62279 1.58484 1.01996 1.02137 1.22804 0.99074 0.92178 0.97163 1.22669 0.98380 0.90802 0.89450 1.87964 1.72505 1.14706 1.55563 1.22669 1.00432 0.84721 0.93501 1.22784 0.97358 0.96619 0.94325 1.22856 0.98707 0.95282 0.90881 0.92518 0.92317 0.93562 0.93387 0.93442 0.94983 0.97255 0.93221 0.89539 0.93280 0.91618 0.89600 0.89227 0.94265 0.88546 0.92004 0.88608 0.92066 0.94312 0.89286 0.89746 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.52 37.16 0.32 -2.25 16 2 C 0.07 1.28 2.18 -67.72 -0.15 1.13 16 3 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.10 -2.08 4.54 -26.74 -0.12 -2.21 16 5 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 6 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 N -0.50 -8.41 4.63 -223.15 -1.03 -9.44 16 15 C 0.04 0.62 5.19 -2.18 -0.01 0.61 16 16 C -0.12 -1.48 5.30 -24.48 -0.13 -1.61 16 17 C 0.06 0.76 2.63 -65.89 -0.17 0.59 16 18 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 19 N -0.52 -5.81 4.55 -224.15 -1.02 -6.83 16 20 C 0.02 0.16 5.48 -3.71 -0.02 0.14 16 21 C 0.06 0.59 7.01 37.21 0.26 0.85 16 22 O -0.39 -4.18 10.83 -35.23 -0.38 -4.56 16 23 C 0.06 0.58 7.01 37.21 0.26 0.84 16 24 C 0.02 0.17 5.43 -3.71 -0.02 0.15 16 25 C 0.05 0.71 4.83 -2.83 -0.01 0.70 16 26 H 0.06 0.77 6.20 -51.93 -0.32 0.45 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.97 7.09 -51.93 -0.37 0.60 16 31 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 1.46 8.10 -51.92 -0.42 1.04 16 35 H 0.05 0.70 5.46 -51.93 -0.28 0.41 16 36 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.09 0.86 7.08 -51.93 -0.37 0.49 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.80 6.95 -51.92 -0.36 0.44 16 46 H 0.08 1.26 7.83 -51.93 -0.41 0.86 16 47 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -31.49 352.66 -10.37 -41.86 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.62 Total: -2.43 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.35 Total: -14.20 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -1.32 Total: -43.05 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.38 Total: -4.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.49 -10.37 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.654 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds