Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47034 * 2 1 4 4 C 1.52998 * 109.46933 * 240.00085 * 2 1 3 5 5 C 1.53004 * 109.47321 * 65.37045 * 4 2 1 6 6 C 1.50692 * 109.47295 * 183.08715 * 5 4 2 7 7 H 1.08003 * 120.00414 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00316 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99586 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00316 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47274 * 60.00129 * 10 8 6 12 12 H 1.48502 * 109.47267 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47290 * 299.99872 * 10 8 6 14 14 N 1.46900 * 109.46948 * 120.00075 * 2 1 3 15 15 C 1.48537 * 110.99788 * 179.06115 * 14 2 1 16 16 C 1.54940 * 103.22591 * 159.72012 * 15 14 2 17 17 C 1.54596 * 102.92085 * 322.59050 * 16 15 14 18 18 H 1.08994 * 110.31174 * 263.03594 * 17 16 15 19 19 N 1.46899 * 110.39272 * 140.91369 * 17 16 15 20 20 C 1.47014 * 111.00509 * 187.86748 * 19 17 16 21 21 C 1.53092 * 109.26230 * 177.60812 * 20 19 17 22 22 O 1.43012 * 109.25867 * 56.84770 * 21 20 19 23 23 C 1.43015 * 113.74326 * 301.33323 * 22 21 20 24 24 C 1.47020 * 110.99844 * 64.23138 * 19 17 16 25 25 C 1.47894 * 111.00161 * 296.46179 * 14 2 1 26 26 H 1.09006 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47610 * 299.99859 * 1 2 3 28 28 H 1.09001 * 109.47580 * 60.00112 * 1 2 3 29 29 H 1.09011 * 109.46983 * 185.36538 * 4 2 1 30 30 H 1.08992 * 109.47832 * 305.36839 * 4 2 1 31 31 H 1.08998 * 109.46666 * 303.09113 * 5 4 2 32 32 H 1.09002 * 109.46745 * 63.08560 * 5 4 2 33 33 H 0.96996 * 119.99906 * 180.02562 * 9 8 6 34 34 H 1.08995 * 110.66857 * 278.15881 * 15 14 2 35 35 H 1.09001 * 110.66015 * 41.29267 * 15 14 2 36 36 H 1.08996 * 110.72628 * 204.23073 * 16 15 14 37 37 H 1.09001 * 110.87158 * 81.01841 * 16 15 14 38 38 H 1.09000 * 109.50696 * 297.54822 * 20 19 17 39 39 H 1.09004 * 109.50008 * 57.67379 * 20 19 17 40 40 H 1.09001 * 109.50731 * 296.91360 * 21 20 19 41 41 H 1.08998 * 109.50867 * 176.78930 * 21 20 19 42 42 H 1.09002 * 109.50083 * 298.73450 * 23 22 21 43 43 H 1.08997 * 109.54787 * 178.62783 * 23 22 21 44 44 H 1.08991 * 109.50613 * 302.32863 * 24 19 17 45 45 H 1.08996 * 109.50171 * 62.46108 * 24 19 17 46 46 H 1.09001 * 109.91787 * 333.50797 * 25 14 2 47 47 H 1.09002 * 109.91574 * 94.80305 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6431 0.0738 -2.4949 6 6 2.0789 -0.6744 -3.7282 7 1 2.5884 -1.6220 -3.6333 8 6 1.8273 -0.1493 -4.9781 9 7 1.2074 1.0048 -5.0937 10 14 2.3681 -1.0764 -6.5069 11 1 1.7097 -2.4070 -6.5377 12 1 1.9829 -0.3048 -7.7159 13 1 3.8422 -1.2539 -6.4826 14 7 2.0196 -0.6925 1.1994 15 6 3.5043 -0.7320 1.2224 16 6 3.8290 -0.9873 2.7158 17 6 2.7532 -0.1551 3.4506 18 1 3.1580 0.8142 3.7414 19 7 2.2656 -0.8783 4.6326 20 6 1.1154 -0.1887 5.2349 21 6 0.6031 -1.0052 6.4243 22 8 1.6688 -1.1977 7.3584 23 6 2.8053 -1.8671 6.8055 24 6 3.3398 -1.0593 5.6199 25 6 1.6162 0.0255 2.4278 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.1258 -0.8052 -1.2025 30 1 1.6003 -1.7173 -1.2987 31 1 0.5612 0.2049 -2.5127 32 1 2.1272 1.0501 -2.4721 33 1 1.0300 1.3741 -5.9729 34 1 3.8771 -1.5475 0.6028 35 1 3.9195 0.2215 0.8961 36 1 4.8285 -0.6276 2.9601 37 1 3.7311 -2.0453 2.9591 38 1 1.4219 0.7998 5.5771 39 1 0.3224 -0.0883 4.4938 40 1 0.2466 -1.9740 6.0742 41 1 -0.2134 -0.4698 6.9088 42 1 2.5128 -2.8609 6.4664 43 1 3.5817 -1.9557 7.5653 44 1 4.1705 -1.5943 5.1598 45 1 3.6819 -0.0848 5.9681 46 1 1.4773 1.0845 2.2103 47 1 0.6926 -0.4000 2.8203 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -41.514463 kcal Electronic energy + Delta-G solvation = -23005.314082 eV Core-core repulsion = 19801.679765 eV Total energy + Delta-G solvation = -3203.634317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21991 -38.73661 -36.12406 -34.10301 -32.52200 -31.61558 -30.05546 -29.02533 -27.85946 -26.27867 -24.84027 -24.28294 -22.23395 -21.07757 -20.98253 -19.89836 -19.21965 -17.22635 -16.55171 -16.33760 -15.68938 -15.43517 -15.25739 -14.98843 -14.52624 -14.38870 -14.24630 -14.00015 -13.08010 -12.92601 -12.82698 -12.61638 -12.23467 -12.10330 -11.77021 -11.73484 -11.60997 -11.31070 -11.10870 -10.98953 -10.90903 -10.82738 -10.74100 -10.66802 -10.52591 -10.20319 -9.92166 -9.58558 -9.27007 -9.00962 -8.61966 -8.30883 -8.08618 -5.97627 -3.99301 3.34862 3.38931 3.41744 3.43616 3.61546 4.19858 4.39496 4.48810 4.64524 4.67774 4.78033 4.87092 4.96647 5.00119 5.12087 5.22462 5.33776 5.34827 5.38069 5.42473 5.48885 5.55237 5.59945 5.62582 5.70116 5.74565 5.78518 5.85748 5.97473 6.06181 6.17592 6.32643 6.43913 6.65285 6.69740 6.76308 6.78949 6.82274 6.85637 7.11674 7.27068 7.47852 7.71777 7.87237 8.03253 8.46917 9.07730 9.64329 11.13779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042427 B = 0.002883 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.793791 B = 9711.432454 C =10072.908930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.035 0.965 4 C -0.101 4.101 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.506 5.506 15 C 0.039 3.961 16 C -0.114 4.114 17 C 0.074 3.926 18 H 0.044 0.956 19 N -0.523 5.523 20 C 0.012 3.988 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.043 3.957 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.020 0.980 32 H 0.011 0.989 33 H 0.260 0.740 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -2.528 23.464 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 H 0.053 0.947 4 C -0.139 4.139 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.231 5.231 15 C -0.090 4.090 16 C -0.153 4.153 17 C -0.035 4.035 18 H 0.062 0.938 19 N -0.249 5.249 20 C -0.116 4.116 21 C -0.012 4.012 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.111 4.111 25 C -0.086 4.086 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.828 -3.315 23.347 23.652 hybrid contribution 0.920 1.258 -1.027 1.867 sum 2.749 -2.058 22.320 22.583 Atomic orbital electron populations 1.21832 0.94591 1.02167 1.01075 1.21993 0.95800 0.95395 0.90362 0.94696 1.21697 0.99272 0.99608 0.93305 1.19132 0.96932 0.94887 0.90557 1.21229 1.37398 1.05968 0.91083 0.92788 1.25019 0.95329 0.95012 0.99113 1.69954 1.41888 1.18163 1.23655 0.86670 0.79065 0.79907 0.82434 1.20216 1.21339 1.20302 1.64870 1.08314 1.48609 1.01293 1.23163 0.89095 1.01046 0.95657 1.22576 0.96638 1.01322 0.94744 1.22556 0.95730 0.94900 0.90280 0.93788 1.62326 1.07043 1.49383 1.06129 1.22865 0.95094 0.96123 0.97479 1.22667 0.89502 0.99828 0.89251 1.87967 1.26525 1.79140 1.37079 1.22659 0.88412 0.95301 0.94913 1.22781 0.94906 1.00034 0.93380 1.22954 0.98265 0.96676 0.90662 0.92194 0.94219 0.91167 0.93511 0.92553 0.96125 0.97074 0.93016 0.89508 0.93848 0.91633 0.89653 0.94156 0.88976 0.92060 0.88510 0.92134 0.88597 0.89393 0.94217 0.94034 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.92 37.16 0.33 -2.01 16 2 C 0.07 1.28 1.83 -67.71 -0.12 1.16 16 3 H 0.04 0.65 7.98 -51.93 -0.41 0.23 16 4 C -0.10 -2.12 4.58 -26.73 -0.12 -2.24 16 5 C 0.02 0.58 4.80 -27.88 -0.13 0.44 16 6 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 7 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 N -0.51 -7.77 5.11 -222.50 -1.14 -8.90 16 15 C 0.04 0.54 5.37 -1.89 -0.01 0.53 16 16 C -0.11 -1.28 5.57 -24.87 -0.14 -1.42 16 17 C 0.07 0.83 2.72 -66.36 -0.18 0.65 16 18 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 19 N -0.52 -5.43 4.53 -224.71 -1.02 -6.45 16 20 C 0.01 0.12 5.33 -3.71 -0.02 0.10 16 21 C 0.06 0.56 7.01 37.21 0.26 0.82 16 22 O -0.39 -3.98 10.83 -35.23 -0.38 -4.36 16 23 C 0.06 0.54 7.01 37.21 0.26 0.80 16 24 C 0.02 0.15 5.48 -3.71 -0.02 0.13 16 25 C 0.04 0.55 4.67 -2.76 -0.01 0.54 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.57 7.27 -51.93 -0.38 0.19 16 28 H 0.07 1.29 6.51 -51.93 -0.34 0.95 16 29 H 0.05 0.97 6.64 -51.92 -0.34 0.62 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.02 0.56 6.44 -51.93 -0.33 0.22 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.25 7.53 -51.93 -0.39 0.86 16 35 H 0.04 0.62 8.01 -51.93 -0.42 0.21 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.99 7.93 -51.93 -0.41 0.57 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.84 6.03 -51.93 -0.31 0.53 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.71 7.11 -51.93 -0.37 0.34 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.04 0.55 7.64 -51.93 -0.40 0.15 16 47 H 0.09 1.09 6.06 -51.93 -0.31 0.78 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -30.80 353.23 -10.43 -41.23 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -8.61 Total: -3.17 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.32 Total: -14.12 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -1.42 Total: -41.74 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.38 Total: -4.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.80 -10.43 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.284 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds