Wall clock time and date at job start Tue Mar 31 2020 05:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47390 * 2 1 4 4 C 1.52995 * 109.46662 * 119.99866 * 2 1 3 5 5 C 1.53005 * 109.47143 * 184.99787 * 4 2 1 6 6 C 1.50692 * 109.47286 * 180.02562 * 5 4 2 7 7 H 1.08003 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99992 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00056 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00195 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.46708 * 90.00000 * 10 8 6 12 12 H 1.48493 * 109.47570 * 210.00007 * 10 8 6 13 13 H 1.48498 * 109.46877 * 330.00675 * 10 8 6 14 14 N 1.46897 * 109.46908 * 239.99374 * 2 1 3 15 15 C 1.47444 * 111.00460 * 305.86396 * 14 2 1 16 16 C 1.54322 * 107.23405 * 123.25578 * 15 14 2 17 17 C 1.55137 * 103.01918 * 22.28594 * 16 15 14 18 18 H 1.09000 * 110.99221 * 82.43215 * 17 16 15 19 19 N 1.46895 * 110.99167 * 206.21501 * 17 16 15 20 20 C 1.47013 * 111.00065 * 300.10622 * 19 17 16 21 21 C 1.53106 * 109.25767 * 177.60460 * 20 19 17 22 22 O 1.43018 * 109.25472 * 56.84648 * 21 20 19 23 23 C 1.43009 * 113.74057 * 301.32708 * 22 21 20 24 24 C 1.47018 * 111.00191 * 176.46740 * 19 17 16 25 25 C 1.47842 * 110.99898 * 66.70616 * 14 2 1 26 26 H 1.09003 * 109.46990 * 307.46550 * 1 2 3 27 27 H 1.09007 * 109.46888 * 67.45422 * 1 2 3 28 28 H 1.08997 * 109.47596 * 187.45536 * 1 2 3 29 29 H 1.09001 * 109.47280 * 65.00098 * 4 2 1 30 30 H 1.09002 * 109.47414 * 304.99818 * 4 2 1 31 31 H 1.08993 * 109.47140 * 59.99506 * 5 4 2 32 32 H 1.09006 * 109.46773 * 299.99851 * 5 4 2 33 33 H 0.97007 * 120.00255 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.88619 * 242.66213 * 15 14 2 35 35 H 1.08996 * 109.88461 * 3.85236 * 15 14 2 36 36 H 1.08997 * 110.70014 * 140.66723 * 16 15 14 37 37 H 1.09000 * 110.70563 * 263.89943 * 16 15 14 38 38 H 1.08996 * 109.50768 * 297.53604 * 20 19 17 39 39 H 1.08999 * 109.50719 * 57.67213 * 20 19 17 40 40 H 1.09000 * 109.50498 * 296.91119 * 21 20 19 41 41 H 1.08998 * 109.50171 * 176.77905 * 21 20 19 42 42 H 1.09005 * 109.50822 * 298.73513 * 23 22 21 43 43 H 1.09001 * 109.54031 * 178.62791 * 23 22 21 44 44 H 1.09000 * 109.50646 * 302.32754 * 24 19 17 45 45 H 1.08994 * 109.50519 * 62.46176 * 24 19 17 46 46 H 1.08999 * 110.37556 * 332.46428 * 25 14 2 47 47 H 1.09008 * 110.37728 * 94.80280 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0671 -1.3243 2.5439 7 1 3.3687 -1.8053 3.2127 8 6 5.4183 -1.3606 2.8157 9 7 5.8567 -1.9814 3.8890 10 14 6.6264 -0.5292 1.6587 11 1 6.8311 0.8786 2.0850 12 1 7.9237 -1.2509 1.6953 13 1 6.0849 -0.5540 0.2762 14 7 2.0196 -0.6926 -1.1993 15 6 1.4355 -2.0422 -1.3057 16 6 0.7241 -2.1261 -2.6726 17 6 1.4274 -1.0189 -3.5011 18 1 2.3664 -1.3813 -3.9195 19 7 0.5437 -0.5123 -4.5596 20 6 0.1533 -1.5896 -5.4805 21 6 -0.8123 -1.0319 -6.5297 22 8 -0.1901 0.0622 -7.2089 23 6 0.2024 1.1298 -6.3420 24 6 1.1782 0.5940 -5.2910 25 6 1.6816 0.0644 -2.4234 26 1 -0.3633 0.6251 0.8157 27 1 -0.3633 0.3941 -0.9492 28 1 -0.3634 -1.0189 0.1333 29 1 1.7515 -1.7715 1.2056 30 1 1.6053 -0.2617 2.1370 31 1 3.8532 0.4368 1.3573 32 1 3.9994 -1.0730 0.4260 33 1 6.8074 -2.0067 4.0804 34 1 2.2239 -2.7928 -1.2514 35 1 0.7153 -2.1988 -0.5027 36 1 0.8781 -3.1044 -3.1277 37 1 -0.3394 -1.9118 -2.5674 38 1 1.0404 -1.9844 -5.9757 39 1 -0.3373 -2.3864 -4.9215 40 1 -1.7222 -0.6859 -6.0394 41 1 -1.0596 -1.8131 -7.2484 42 1 -0.6781 1.5387 -5.8463 43 1 0.6885 1.9124 -6.9245 44 1 1.4358 1.3911 -4.5936 45 1 2.0817 0.2341 -5.7831 46 1 0.7828 0.6603 -2.2650 47 1 2.5147 0.7034 -2.7167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:47 Heat of formation + Delta-G solvation = -35.943693 kcal Electronic energy + Delta-G solvation = -23401.523517 eV Core-core repulsion = 20198.130766 eV Total energy + Delta-G solvation = -3203.392751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27017 -38.99428 -36.14960 -33.89163 -32.40891 -31.60523 -30.17272 -28.93390 -28.63151 -26.09949 -25.09976 -24.38357 -22.11927 -21.24459 -20.61073 -20.21163 -18.84703 -17.27746 -16.52737 -16.37206 -15.96671 -15.72203 -15.31132 -15.14256 -14.52201 -14.26691 -14.05705 -13.83523 -13.40587 -12.93559 -12.74823 -12.66229 -12.36648 -12.35156 -12.01806 -11.72909 -11.71229 -11.51039 -11.44338 -11.12199 -10.88513 -10.87104 -10.78663 -10.61257 -10.36121 -9.96703 -9.78197 -9.62583 -9.41930 -9.00260 -8.67690 -8.42558 -7.90632 -5.94264 -3.90443 3.35652 3.39258 3.46201 3.55014 3.57763 4.29152 4.39631 4.56359 4.61616 4.67669 4.74237 4.83287 4.95410 4.97557 5.07368 5.20980 5.26015 5.31506 5.33341 5.41585 5.45276 5.47808 5.50728 5.57057 5.62184 5.70082 5.71801 5.76438 5.92718 6.01952 6.04737 6.18232 6.31911 6.34648 6.52113 6.65212 6.72346 6.76926 6.81464 7.08774 7.30666 7.42713 7.51806 7.73183 7.94423 8.65742 9.11710 9.70033 11.19548 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.003589 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.137197 B = 7800.325723 C = 8155.910681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.092 4.092 5 C -0.006 4.006 6 C -0.517 4.517 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.512 5.512 15 C 0.041 3.959 16 C -0.131 4.131 17 C 0.072 3.928 18 H 0.058 0.942 19 N -0.528 5.528 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.016 3.984 25 C 0.049 3.951 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.004 0.996 32 H 0.030 0.970 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 3.721 -20.953 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 H 0.095 0.905 4 C -0.130 4.130 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.549 5.549 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.235 5.235 15 C -0.087 4.087 16 C -0.170 4.170 17 C -0.036 4.036 18 H 0.075 0.925 19 N -0.253 5.253 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.112 4.112 25 C -0.079 4.079 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.025 3.823 -20.775 25.355 hybrid contribution 0.643 0.124 -0.530 0.842 sum -13.382 3.947 -21.305 25.467 Atomic orbital electron populations 1.22519 0.98375 1.01951 1.01455 1.22031 0.91553 0.98563 0.91364 0.90543 1.21522 0.99134 0.98901 0.93460 1.19473 0.91353 0.96013 0.97522 1.21252 0.92806 1.33934 1.07484 0.91433 1.25025 0.98458 0.95095 0.95056 1.69933 1.14432 1.44059 1.26525 0.86777 0.80380 0.79501 0.82703 1.20578 1.21720 1.18512 1.63762 1.56623 1.01827 1.01308 1.22830 0.97984 0.92288 0.95622 1.22841 1.00205 0.97888 0.96059 1.22818 0.94000 0.95537 0.91286 0.92453 1.62262 1.41931 1.09068 1.12078 1.22782 0.99280 0.94562 0.94483 1.22666 0.94810 0.89310 0.94477 1.87976 1.79329 1.29111 1.34204 1.22669 0.97584 0.89418 0.91586 1.22802 0.96477 0.95299 0.96667 1.23022 0.99931 0.95732 0.89254 0.92308 0.92915 0.92447 0.92805 0.92701 0.97751 0.95200 0.92970 0.90415 0.91541 0.91324 0.90754 0.93962 0.89406 0.92300 0.88547 0.92275 0.88476 0.89299 0.93844 0.92304 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.55 37.16 0.32 -2.13 16 2 C 0.07 1.18 2.28 -67.71 -0.15 1.03 16 3 H 0.08 1.26 8.12 -51.93 -0.42 0.83 16 4 C -0.09 -1.83 4.53 -26.73 -0.12 -1.96 16 5 C -0.01 -0.15 3.93 -27.88 -0.11 -0.26 16 6 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 7 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 10 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 14 N -0.51 -7.98 4.61 -223.29 -1.03 -9.01 16 15 C 0.04 0.57 5.57 -2.83 -0.02 0.56 16 16 C -0.13 -1.47 5.25 -24.91 -0.13 -1.60 16 17 C 0.07 0.83 2.70 -65.58 -0.18 0.65 16 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 19 N -0.53 -5.32 4.63 -223.78 -1.04 -6.36 16 20 C 0.02 0.15 5.45 -3.71 -0.02 0.13 16 21 C 0.06 0.53 7.01 37.21 0.26 0.79 16 22 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16 23 C 0.06 0.54 7.01 37.21 0.26 0.80 16 24 C 0.02 0.15 5.49 -3.71 -0.02 0.13 16 25 C 0.05 0.63 5.02 -2.30 -0.01 0.62 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.65 6.17 -51.93 -0.32 0.33 16 28 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 29 H 0.05 1.08 6.76 -51.93 -0.35 0.73 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 32 H 0.03 0.75 6.81 -51.93 -0.35 0.40 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.94 4.84 -51.93 -0.25 0.68 16 36 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.71 7.01 -51.93 -0.36 0.35 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.78 7.11 -51.93 -0.37 0.42 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.74 5.93 -51.93 -0.31 0.43 16 47 H 0.07 0.94 7.96 -51.92 -0.41 0.53 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -32.07 348.61 -9.96 -42.04 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.53 Total: -2.59 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.35 Total: -14.86 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -1.29 Total: -43.41 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.38 Total: -4.30 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.07 -9.96 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.095 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds