Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46924 * 2 1 4 4 C 1.53001 * 109.46927 * 239.99991 * 2 1 3 5 5 C 1.52995 * 109.47181 * 175.60274 * 4 2 1 6 6 C 1.50697 * 109.47224 * 184.98063 * 5 4 2 7 7 H 1.08000 * 120.00253 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99914 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99871 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00095 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47036 * 90.00298 * 10 8 6 12 12 H 1.48495 * 109.46907 * 210.00415 * 10 8 6 13 13 H 1.48503 * 109.47131 * 330.00264 * 10 8 6 14 14 N 1.46895 * 109.47088 * 120.00271 * 2 1 3 15 15 C 1.47442 * 110.99834 * 301.88776 * 14 2 1 16 16 C 1.54319 * 107.23373 * 123.26190 * 15 14 2 17 17 C 1.55142 * 103.01728 * 22.28268 * 16 15 14 18 18 H 1.08999 * 110.98978 * 82.44267 * 17 16 15 19 19 N 1.46904 * 110.98988 * 206.25305 * 17 16 15 20 20 C 1.47007 * 111.00142 * 300.58287 * 19 17 16 21 21 C 1.53099 * 109.25802 * 177.60546 * 20 19 17 22 22 O 1.43011 * 109.25688 * 56.84981 * 21 20 19 23 23 C 1.43013 * 113.73890 * 301.32757 * 22 21 20 24 24 C 1.47004 * 110.99970 * 176.94590 * 19 17 16 25 25 C 1.47836 * 111.00423 * 62.73057 * 14 2 1 26 26 H 1.09001 * 109.46865 * 305.18543 * 1 2 3 27 27 H 1.08992 * 109.47367 * 65.18688 * 1 2 3 28 28 H 1.09002 * 109.47295 * 185.19032 * 1 2 3 29 29 H 1.08998 * 109.47209 * 295.60406 * 4 2 1 30 30 H 1.09003 * 109.46985 * 55.60114 * 4 2 1 31 31 H 1.08999 * 109.47607 * 304.98669 * 5 4 2 32 32 H 1.09006 * 109.47150 * 64.98026 * 5 4 2 33 33 H 0.97006 * 120.00142 * 179.97438 * 9 8 6 34 34 H 1.09007 * 109.88871 * 242.66184 * 15 14 2 35 35 H 1.08994 * 109.89066 * 3.85206 * 15 14 2 36 36 H 1.09004 * 110.70725 * 140.66230 * 16 15 14 37 37 H 1.09000 * 110.70513 * 263.72722 * 16 15 14 38 38 H 1.08998 * 109.50728 * 297.54087 * 20 19 17 39 39 H 1.09003 * 109.50716 * 57.67553 * 20 19 17 40 40 H 1.09001 * 109.50696 * 296.91592 * 21 20 19 41 41 H 1.09000 * 109.50541 * 176.78832 * 21 20 19 42 42 H 1.08999 * 109.50861 * 298.73943 * 23 22 21 43 43 H 1.08998 * 109.54300 * 178.62577 * 23 22 21 44 44 H 1.09005 * 109.51388 * 302.33051 * 24 19 17 45 45 H 1.09004 * 109.51239 * 62.46048 * 24 19 17 46 46 H 1.08996 * 110.37721 * 332.46972 * 25 14 2 47 47 H 1.09011 * 110.37485 * 94.80491 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5659 -0.6262 -1.3058 6 6 4.0593 -1.2289 -2.5959 7 1 3.3549 -1.6384 -3.3049 8 6 5.4100 -1.2576 -2.8713 9 7 5.8405 -1.7830 -3.9974 10 14 6.6284 -0.5487 -1.6455 11 1 7.0517 -1.6107 -0.6978 12 1 7.8159 -0.0306 -2.3711 13 1 5.9860 0.5588 -0.8931 14 7 2.0197 -0.6925 1.1994 15 6 1.5102 -0.0507 2.4251 16 6 0.7615 -1.1331 3.2307 17 6 1.3737 -2.4539 2.6944 18 1 2.3179 -2.6766 3.1914 19 7 0.4289 -3.5693 2.8404 20 6 0.0617 -3.7677 4.2500 21 6 -0.9671 -4.8972 4.3496 22 8 -0.4256 -6.0818 3.7592 23 6 -0.0576 -5.9245 2.3862 24 6 0.9803 -4.8053 2.2667 25 6 1.6001 -2.1101 1.2011 26 1 -0.3633 0.5922 0.8399 27 1 -0.3634 0.4312 -0.9327 28 1 -0.3634 -1.0235 0.0930 29 1 1.7424 -1.7691 -1.2108 30 1 1.6137 -0.2549 -2.1375 31 1 3.8670 0.4201 -1.2550 32 1 3.9953 -1.1690 -0.4637 33 1 6.7908 -1.8029 -4.1913 34 1 2.3415 0.3398 3.0122 35 1 0.8262 0.7568 2.1640 36 1 0.9563 -1.0233 4.2976 37 1 -0.3090 -1.0919 3.0295 38 1 0.9498 -4.0327 4.8236 39 1 -0.3680 -2.8480 4.6471 40 1 -1.8757 -4.6096 3.8207 41 1 -1.1996 -5.0862 5.3976 42 1 -0.9398 -5.6667 1.8002 43 1 0.3674 -6.8564 2.0135 44 1 1.2214 -4.6432 1.2161 45 1 1.8832 -5.0870 2.8086 46 1 0.6744 -2.2326 0.6389 47 1 2.3857 -2.7389 0.7818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = -36.186843 kcal Electronic energy + Delta-G solvation = -23649.016255 eV Core-core repulsion = 20445.612961 eV Total energy + Delta-G solvation = -3203.403294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.22242 -38.95253 -36.04650 -33.95605 -32.42317 -31.48314 -30.14739 -28.86003 -28.62047 -26.01651 -25.30077 -24.20539 -22.05228 -21.15870 -20.47337 -20.28068 -18.98785 -17.13280 -16.55014 -16.26528 -15.97048 -15.50762 -15.22385 -15.04222 -14.48717 -14.33359 -14.08647 -13.87774 -13.29553 -12.83486 -12.73794 -12.68507 -12.51248 -12.28526 -11.91226 -11.67821 -11.62258 -11.51439 -11.38607 -11.17871 -10.87961 -10.79309 -10.70986 -10.57065 -10.38446 -9.87592 -9.84342 -9.62159 -9.41011 -9.02043 -8.58255 -8.43825 -7.91755 -5.95642 -3.92090 3.39157 3.44306 3.45627 3.53286 3.67625 4.31952 4.45492 4.55058 4.68703 4.72248 4.80363 4.92717 5.01451 5.05688 5.10953 5.24660 5.30342 5.37600 5.40284 5.40876 5.47498 5.52067 5.57529 5.62408 5.69638 5.71195 5.74710 5.80147 5.96535 6.05225 6.09495 6.15130 6.26298 6.34641 6.51867 6.72491 6.75029 6.85466 6.91737 7.06375 7.30569 7.42564 7.52031 7.67587 7.92526 8.64199 9.10245 9.68623 11.18088 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.004323 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.884266 B = 6475.814321 C = 7106.979601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.004 4.004 6 C -0.518 4.518 7 H 0.068 0.932 8 C 0.065 3.935 9 N -0.909 5.909 10 Si 0.881 3.119 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.264 1.264 14 N -0.513 5.513 15 C 0.039 3.961 16 C -0.130 4.130 17 C 0.071 3.929 18 H 0.057 0.943 19 N -0.527 5.527 20 C 0.017 3.983 21 C 0.065 3.935 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.015 3.985 25 C 0.051 3.949 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.011 0.989 32 H 0.021 0.979 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 -2.327 17.983 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.042 4.042 6 C -0.556 4.556 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.548 5.548 10 Si 0.708 3.292 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.188 1.188 14 N -0.237 5.237 15 C -0.089 4.089 16 C -0.169 4.169 17 C -0.038 4.038 18 H 0.075 0.925 19 N -0.253 5.253 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.114 4.114 25 C -0.076 4.076 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.129 -2.374 17.700 22.772 hybrid contribution 0.652 0.407 0.820 1.124 sum -13.476 -1.966 18.521 22.989 Atomic orbital electron populations 1.22523 0.98419 1.01871 1.01571 1.22065 0.91546 0.98700 0.91191 0.90324 1.21555 0.99174 0.98861 0.93701 1.19455 0.91207 0.96518 0.97002 1.21261 0.92767 1.38483 1.03135 0.91401 1.25020 0.98472 0.94919 0.95130 1.69931 1.14633 1.46189 1.24095 0.86756 0.80626 0.80226 0.81560 1.20454 1.21755 1.18828 1.63773 1.56949 1.01537 1.01411 1.22818 0.97836 0.96517 0.91749 1.22799 1.00471 0.94094 0.99534 1.22843 0.93338 0.90085 0.97511 0.92539 1.62249 1.42100 1.04770 1.16137 1.22773 0.99023 0.99827 0.89459 1.22645 0.95350 0.84574 0.98687 1.87973 1.82704 1.34350 1.25619 1.22686 0.97390 0.98382 0.82794 1.22828 0.96830 0.89988 1.01709 1.23034 1.00401 0.90191 0.94008 0.93233 0.92161 0.92266 0.92944 0.92501 0.97098 0.96033 0.92948 0.90961 0.92272 0.91504 0.90699 0.94063 0.89633 0.92355 0.88685 0.92211 0.88314 0.88861 0.93777 0.91827 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 8.62 37.16 0.32 -2.15 16 2 C 0.07 1.18 2.32 -67.71 -0.16 1.03 16 3 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.10 -1.89 4.44 -26.73 -0.12 -2.00 16 5 C 0.00 -0.11 3.86 -27.89 -0.11 -0.22 16 6 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 10 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 14 N -0.51 -7.98 4.74 -223.30 -1.06 -9.04 16 15 C 0.04 0.49 6.36 -2.84 -0.02 0.47 16 16 C -0.13 -1.39 5.22 -24.91 -0.13 -1.52 16 17 C 0.07 0.86 2.70 -65.57 -0.18 0.69 16 18 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 19 N -0.53 -5.87 4.62 -223.78 -1.03 -6.90 16 20 C 0.02 0.17 5.44 -3.71 -0.02 0.15 16 21 C 0.06 0.58 7.01 37.21 0.26 0.84 16 22 O -0.39 -4.33 10.83 -35.23 -0.38 -4.72 16 23 C 0.06 0.65 7.01 37.21 0.26 0.91 16 24 C 0.01 0.16 5.49 -3.71 -0.02 0.14 16 25 C 0.05 0.75 3.63 -2.31 -0.01 0.74 16 26 H 0.05 0.59 6.39 -51.93 -0.33 0.25 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 29 H 0.05 1.04 6.77 -51.93 -0.35 0.69 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 32 H 0.02 0.53 7.30 -51.93 -0.38 0.15 16 33 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.06 0.69 5.88 -51.93 -0.31 0.38 16 36 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.71 7.00 -51.93 -0.36 0.34 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.07 7.13 -51.93 -0.37 0.70 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.94 5.38 -51.93 -0.28 0.66 16 47 H 0.08 1.35 7.94 -51.92 -0.41 0.94 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -31.77 348.61 -10.02 -41.79 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.55 Total: -1.91 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -0.35 Total: -14.49 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -1.32 Total: -43.79 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.38 Total: -4.72 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.77 -10.02 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.600 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds