Wall clock time and date at job start Tue Mar 31 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47684 * 2 1 4 4 C 1.53005 * 109.46940 * 239.99837 * 2 1 3 5 5 C 1.53006 * 109.46884 * 177.43491 * 4 2 1 6 6 C 1.50697 * 109.46751 * 185.00911 * 5 4 2 7 7 H 1.08006 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99586 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00318 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99632 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47229 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47076 * 120.00137 * 10 8 6 13 13 H 1.48504 * 109.47018 * 239.99338 * 10 8 6 14 14 N 1.46899 * 109.46863 * 120.00345 * 2 1 3 15 15 C 1.46850 * 111.00090 * 290.17613 * 14 2 1 16 16 C 1.53033 * 109.52375 * 185.83870 * 15 14 2 17 17 C 1.53114 * 109.28224 * 300.82285 * 16 15 14 18 18 C 1.53119 * 109.16264 * 57.65598 * 17 16 15 19 19 H 1.08997 * 109.49986 * 62.32106 * 18 17 16 20 20 C 1.50696 * 109.50632 * 182.40558 * 18 17 16 21 21 O 1.21288 * 120.00060 * 105.93041 * 20 18 17 22 22 N 1.34770 * 120.00097 * 285.93079 * 20 18 17 23 23 C 1.46499 * 120.00347 * 184.63185 * 22 20 18 24 24 C 1.46505 * 120.00087 * 4.62724 * 22 20 18 25 25 C 1.46851 * 111.00381 * 54.39007 * 14 2 1 26 26 H 1.09000 * 109.46959 * 300.00194 * 1 2 3 27 27 H 1.09004 * 109.46832 * 59.99751 * 1 2 3 28 28 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47281 * 297.43669 * 4 2 1 30 30 H 1.08999 * 109.46757 * 57.43510 * 4 2 1 31 31 H 1.08993 * 109.47064 * 305.00669 * 5 4 2 32 32 H 1.08997 * 109.47179 * 65.00845 * 5 4 2 33 33 H 0.96999 * 120.00341 * 180.02562 * 9 8 6 34 34 H 1.09007 * 109.45674 * 65.82248 * 15 14 2 35 35 H 1.08998 * 109.46241 * 305.85929 * 15 14 2 36 36 H 1.09004 * 109.49813 * 180.88122 * 16 15 14 37 37 H 1.09003 * 109.53790 * 60.78544 * 16 15 14 38 38 H 1.09003 * 109.52485 * 297.75254 * 17 16 15 39 39 H 1.09001 * 109.52288 * 177.56373 * 17 16 15 40 40 H 1.09002 * 109.46854 * 270.00043 * 23 22 20 41 41 H 1.09008 * 109.46868 * 29.99685 * 23 22 20 42 42 H 1.08997 * 109.47724 * 149.99735 * 23 22 20 43 43 H 1.08994 * 109.47205 * 265.00627 * 24 22 20 44 44 H 1.09000 * 109.46664 * 25.00738 * 24 22 20 45 45 H 1.08998 * 109.47253 * 145.00265 * 24 22 20 46 46 H 1.08996 * 109.46128 * 54.13990 * 25 14 2 47 47 H 1.09004 * 109.45623 * 294.17762 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5687 -0.6656 -1.2820 6 6 4.0657 -1.2669 -2.5713 7 1 3.3617 -1.6508 -3.2949 8 6 5.4192 -1.3279 -2.8268 9 7 6.2765 -0.8610 -1.9455 10 14 6.0354 -2.0739 -4.4247 11 1 4.8783 -2.5233 -5.2397 12 1 6.8083 -1.0558 -5.1806 13 1 6.9096 -3.2360 -4.1238 14 7 2.0196 -0.6926 1.1994 15 6 1.7492 0.0949 2.4091 16 6 2.3986 -0.5841 3.6171 17 6 1.8306 -1.9979 3.7683 18 6 2.0827 -2.7816 2.4773 19 1 3.1560 -2.8718 2.3101 20 6 1.4746 -4.1553 2.5956 21 8 0.4548 -4.4209 1.9952 22 7 2.0640 -5.0888 3.3687 23 6 1.5313 -6.4531 3.4046 24 6 3.2375 -4.7393 4.1731 25 6 1.4424 -2.0390 1.3022 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7147 -1.7614 -1.2266 30 1 1.6396 -0.2347 -2.1386 31 1 3.8960 0.3718 -1.2150 32 1 3.9709 -1.2286 -0.4397 33 1 7.2287 -0.9035 -2.1254 34 1 0.6725 0.1621 2.5654 35 1 2.1620 1.0967 2.2901 36 1 2.1844 -0.0076 4.5171 37 1 3.4770 -0.6392 3.4682 38 1 0.7584 -1.9415 3.9567 39 1 2.3217 -2.5006 4.6014 40 1 0.7855 -6.5311 4.1956 41 1 1.0697 -6.6882 2.4454 42 1 2.3423 -7.1548 3.5992 43 1 4.1436 -4.9958 3.6243 44 1 3.2295 -3.6695 4.3816 45 1 3.2124 -5.2926 5.1119 46 1 1.6324 -2.5869 0.3794 47 1 0.3672 -1.9617 1.4638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:33 Heat of formation + Delta-G solvation = -40.578395 kcal Electronic energy + Delta-G solvation = -23780.325705 eV Core-core repulsion = 20576.731978 eV Total energy + Delta-G solvation = -3203.593726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.41503 -38.59005 -35.62162 -35.17174 -32.95157 -31.29797 -30.39085 -28.86659 -28.04286 -26.36872 -25.21523 -24.02958 -23.26623 -21.36925 -20.13794 -19.19844 -18.77819 -16.88321 -16.46162 -16.07318 -15.73526 -15.38276 -14.80886 -14.40407 -14.21666 -13.96426 -13.79998 -13.42340 -13.18628 -12.78304 -12.69720 -12.56615 -12.46209 -12.31124 -12.05442 -11.98243 -11.78854 -11.37019 -11.24094 -11.03996 -10.84659 -10.77310 -10.56487 -10.39375 -10.32541 -9.92225 -9.60428 -9.50548 -9.14987 -8.83647 -8.75640 -8.21285 -7.70604 -5.86592 -3.87338 2.66659 2.95523 3.37363 3.44733 3.49549 4.20731 4.55600 4.56120 4.79414 4.90943 4.95110 5.06357 5.15569 5.28856 5.30878 5.42812 5.47840 5.49284 5.50999 5.55063 5.59992 5.68484 5.70252 5.74140 5.80760 5.87235 5.95378 6.07333 6.14822 6.19878 6.34030 6.36557 6.40079 6.44690 6.50740 6.75038 6.94812 7.26854 7.34368 7.58086 7.64421 7.88818 8.10992 8.19121 8.24687 8.60645 9.21927 9.75293 11.24361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.005091 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.417828 B = 5498.610209 C = 6451.008664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.104 4.104 5 C 0.033 3.967 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.884 3.116 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.518 5.518 15 C 0.052 3.948 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.104 4.104 19 H 0.107 0.893 20 C 0.522 3.478 21 O -0.539 6.539 22 N -0.625 5.625 23 C 0.086 3.914 24 C 0.065 3.935 25 C 0.076 3.924 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.010 0.990 32 H 0.029 0.971 33 H 0.257 0.743 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -4.076 16.196 18.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.023 4.023 3 H 0.096 0.904 4 C -0.142 4.142 5 C -0.004 4.004 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.242 5.242 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.126 4.126 19 H 0.125 0.875 20 C 0.310 3.690 21 O -0.415 6.415 22 N -0.359 5.359 23 C -0.056 4.056 24 C -0.078 4.078 25 C -0.053 4.053 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.159 -4.253 15.855 18.332 hybrid contribution -0.290 -0.453 -0.748 0.921 sum -8.449 -4.706 15.107 17.938 Atomic orbital electron populations 1.22516 0.98835 1.01913 1.01214 1.21848 0.91134 0.98393 0.90967 0.90392 1.21745 1.00825 0.98329 0.93304 1.18962 0.87938 0.96942 0.96588 1.21418 0.91571 1.38838 1.03751 0.93086 1.24979 0.97124 0.95802 0.96435 1.69988 1.01697 1.47047 1.34728 0.86658 0.78815 0.78944 0.84297 1.19876 1.21159 1.21185 1.62008 1.58746 1.01715 1.01699 1.22091 0.97651 0.97462 0.90405 1.21573 1.01650 0.94635 0.97341 1.21712 1.01377 0.96338 0.95627 1.21352 1.02789 0.90904 0.97535 0.87514 1.20796 0.83867 0.86645 0.77653 1.90676 1.24042 1.81002 1.45811 1.47740 1.31320 1.10870 1.45995 1.21596 0.98940 0.82194 1.02918 1.22116 0.87673 1.02913 0.95054 1.21815 0.95985 0.89921 0.97534 0.93540 0.92334 0.92404 0.93422 0.93198 0.97151 0.95270 0.93358 0.95391 0.90778 0.91559 0.90439 0.91934 0.91047 0.93075 0.90641 0.91366 0.92164 0.89456 0.91371 0.89508 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 8.45 37.16 0.31 -2.49 16 2 C 0.08 1.49 2.34 -67.71 -0.16 1.33 16 3 H 0.08 1.39 7.99 -51.93 -0.41 0.97 16 4 C -0.10 -2.23 4.51 -26.73 -0.12 -2.35 16 5 C 0.03 0.86 4.77 -27.88 -0.13 0.73 16 6 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 7 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 10 Si 0.88 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 N -0.52 -8.69 4.05 -226.68 -0.92 -9.61 16 15 C 0.05 0.71 5.13 -3.83 -0.02 0.69 16 16 C -0.11 -1.29 6.09 -26.66 -0.16 -1.46 16 17 C -0.11 -1.26 4.97 -26.61 -0.13 -1.40 16 18 C -0.10 -1.48 1.86 -91.69 -0.17 -1.65 16 19 H 0.11 1.57 7.67 -51.93 -0.40 1.17 16 20 C 0.52 7.82 6.92 -10.99 -0.08 7.74 16 21 O -0.54 -9.93 15.60 5.55 0.09 -9.84 16 22 N -0.62 -7.38 3.27 -189.51 -0.62 -8.00 16 23 C 0.09 0.87 10.42 59.85 0.62 1.49 16 24 C 0.07 0.55 9.99 59.85 0.60 1.15 16 25 C 0.08 1.26 3.24 -3.83 -0.01 1.25 16 26 H 0.05 0.63 6.81 -51.93 -0.35 0.28 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.91 6.46 -51.93 -0.34 0.57 16 29 H 0.05 1.03 6.31 -51.93 -0.33 0.71 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.03 0.82 7.83 -51.93 -0.41 0.41 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.03 0.37 6.87 -51.93 -0.36 0.01 16 35 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.64 5.45 -51.93 -0.28 0.36 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.88 7.49 -51.92 -0.39 0.50 16 42 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.70 3.99 -51.93 -0.21 0.49 16 45 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 46 H 0.09 1.69 6.16 -51.93 -0.32 1.37 16 47 H 0.04 0.68 6.36 -51.93 -0.33 0.35 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -33.43 355.09 -8.55 -41.98 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.30 Total: -1.70 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 0.14 Total: -8.76 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.80 Total: -44.22 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.43 -8.55 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.400 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds