Wall clock time and date at job start Tue Mar 31 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47906 * 2 1 4 4 C 1.53006 * 109.46893 * 239.99728 * 2 1 3 5 5 C 1.52994 * 109.46833 * 64.83467 * 4 2 1 6 6 C 1.50703 * 109.47068 * 175.94496 * 5 4 2 7 7 H 1.08005 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00200 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00165 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47178 * 89.99927 * 10 8 6 12 12 H 1.48498 * 109.47357 * 209.99919 * 10 8 6 13 13 H 1.48499 * 109.47490 * 330.00077 * 10 8 6 14 14 N 1.46902 * 109.46811 * 120.00258 * 2 1 3 15 15 C 1.46842 * 111.00033 * 193.18946 * 14 2 1 16 16 C 1.53041 * 109.52547 * 174.16067 * 15 14 2 17 17 C 1.53112 * 109.27783 * 59.17771 * 16 15 14 18 18 C 1.53117 * 109.16577 * 302.35067 * 17 16 15 19 19 H 1.09006 * 109.49934 * 297.71348 * 18 17 16 20 20 C 1.50700 * 109.50785 * 177.63431 * 18 17 16 21 21 O 1.21276 * 120.00226 * 247.12640 * 20 18 17 22 22 N 1.34782 * 119.99663 * 67.13099 * 20 18 17 23 23 C 1.46503 * 119.99655 * 186.18560 * 22 20 18 24 24 C 1.46498 * 120.00336 * 6.17971 * 22 20 18 25 25 C 1.46852 * 111.00206 * 68.97816 * 14 2 1 26 26 H 1.09006 * 109.46692 * 300.00331 * 1 2 3 27 27 H 1.09001 * 109.46753 * 59.99644 * 1 2 3 28 28 H 1.08997 * 109.47906 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47159 * 304.82979 * 4 2 1 30 30 H 1.08998 * 109.46838 * 184.83475 * 4 2 1 31 31 H 1.08996 * 109.47019 * 295.94132 * 5 4 2 32 32 H 1.08996 * 109.47438 * 55.94876 * 5 4 2 33 33 H 0.97000 * 120.00063 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46594 * 294.17617 * 15 14 2 35 35 H 1.09007 * 109.46131 * 54.15584 * 15 14 2 36 36 H 1.08996 * 109.50634 * 179.12601 * 16 15 14 37 37 H 1.09001 * 109.50184 * 299.19765 * 16 15 14 38 38 H 1.08996 * 109.52200 * 62.25455 * 17 16 15 39 39 H 1.09003 * 109.52315 * 182.44026 * 17 16 15 40 40 H 1.08997 * 109.47215 * 89.99629 * 23 22 20 41 41 H 1.08998 * 109.47033 * 210.00110 * 23 22 20 42 42 H 1.09005 * 109.47074 * 329.99360 * 23 22 20 43 43 H 1.08996 * 109.47000 * 85.22868 * 24 22 20 44 44 H 1.09001 * 109.47239 * 205.23133 * 24 22 20 45 45 H 1.09000 * 109.46896 * 325.22970 * 24 22 20 46 46 H 1.08993 * 109.46344 * 305.86079 * 25 14 2 47 47 H 1.09000 * 109.45739 * 65.82663 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6316 0.0666 -2.4955 6 6 2.2180 -0.5892 -3.7190 7 1 2.8212 -1.4794 -3.6179 8 6 1.9835 -0.0536 -4.9676 9 7 1.2485 1.0301 -5.0909 10 14 2.7098 -0.8670 -6.4843 11 1 1.7548 -1.8750 -7.0107 12 1 2.9657 0.1624 -7.5235 13 1 3.9863 -1.5351 -6.1245 14 7 2.0196 -0.6926 1.1994 15 6 3.4534 -0.4473 1.4003 16 6 3.8957 -1.0604 2.7310 17 6 3.6138 -2.5652 2.7127 18 6 2.1222 -2.7942 2.4538 19 1 1.5407 -2.3574 3.2657 20 6 1.8461 -4.2737 2.3765 21 8 1.5022 -4.7723 1.3258 22 7 1.9814 -5.0427 3.4751 23 6 1.8459 -6.4978 3.3718 24 6 2.2639 -4.4236 4.7724 25 6 1.7313 -2.1309 1.1312 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.6077 -1.7210 -1.2935 30 1 3.1265 -0.7970 -1.2070 31 1 0.5447 0.0807 -2.5765 32 1 2.0034 1.0882 -2.4175 33 1 1.0833 1.4067 -5.9694 34 1 4.0172 -0.9020 0.5858 35 1 3.6395 0.6266 1.4157 36 1 4.9632 -0.8917 2.8725 37 1 3.3426 -0.5958 3.5473 38 1 4.1973 -3.0355 1.9213 39 1 3.8873 -2.9987 3.6748 40 1 2.8207 -6.9397 3.1653 41 1 1.4588 -6.8942 4.3104 42 1 1.1574 -6.7421 2.5628 43 1 1.3288 -4.1120 5.2376 44 1 2.7680 -5.1439 5.4167 45 1 2.9053 -3.5541 4.6280 46 1 0.6668 -2.2798 0.9509 47 1 2.3032 -2.5777 0.3180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:35 Heat of formation + Delta-G solvation = -42.859621 kcal Electronic energy + Delta-G solvation = -23450.819589 eV Core-core repulsion = 20247.126941 eV Total energy + Delta-G solvation = -3203.692648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52642 -38.65113 -35.77490 -35.30955 -32.98788 -31.38330 -30.64138 -28.57771 -28.20032 -26.50891 -25.12063 -24.16627 -23.35264 -21.51007 -20.46611 -19.33185 -18.56418 -17.02993 -16.59100 -16.16854 -15.83691 -15.38696 -14.85058 -14.46913 -14.23754 -14.09212 -13.80392 -13.55539 -13.28168 -12.98357 -12.80522 -12.66910 -12.56405 -12.47000 -12.11672 -12.05972 -11.54124 -11.34841 -11.19605 -11.03747 -10.91882 -10.71655 -10.62009 -10.52470 -10.26315 -10.18079 -9.68504 -9.52563 -9.34235 -9.07356 -8.87137 -8.27989 -7.79287 -5.94252 -3.95963 2.54369 2.81506 3.35845 3.41587 3.45611 4.11722 4.42445 4.51334 4.65727 4.77614 4.82719 4.94260 4.99125 5.16682 5.21069 5.30332 5.34004 5.41162 5.42916 5.54884 5.58284 5.60712 5.70616 5.75896 5.85451 5.90261 6.00277 6.06444 6.10573 6.20473 6.28622 6.31270 6.42879 6.50037 6.68101 6.76643 6.86950 7.13604 7.14556 7.45640 7.54130 7.74027 7.90235 8.06072 8.07844 8.50472 9.10969 9.67714 11.16788 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.003887 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.354616 B = 7200.967811 C = 7808.825729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.139 4.139 5 C 0.026 3.974 6 C -0.518 4.518 7 H 0.052 0.948 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.535 5.535 15 C 0.049 3.951 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.101 4.101 19 H 0.100 0.900 20 C 0.518 3.482 21 O -0.530 6.530 22 N -0.627 5.627 23 C 0.084 3.916 24 C 0.067 3.933 25 C 0.072 3.928 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -8.354 23.456 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 H 0.096 0.904 4 C -0.178 4.178 5 C -0.011 4.011 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 N -0.259 5.259 15 C -0.079 4.079 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.123 4.123 19 H 0.118 0.882 20 C 0.306 3.694 21 O -0.405 6.405 22 N -0.362 5.362 23 C -0.059 4.059 24 C -0.076 4.076 25 C -0.057 4.057 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.788 -8.311 23.168 24.771 hybrid contribution 0.827 -0.846 -1.507 1.916 sum 3.614 -9.157 21.661 23.793 Atomic orbital electron populations 1.21823 0.94670 1.01583 1.01557 1.21818 0.95671 0.97671 0.87517 0.90444 1.22254 0.99462 0.99910 0.96189 1.19067 0.96818 0.94859 0.90406 1.21285 1.31457 1.11261 0.91666 0.92967 1.25005 0.95362 0.95022 0.99017 1.69964 1.38969 1.21176 1.23474 0.86632 0.79574 0.79123 0.82918 1.20669 1.21243 1.19966 1.62221 1.14984 1.09421 1.39245 1.22097 0.88885 1.00704 0.96254 1.21565 1.00726 0.94238 0.98430 1.21740 0.93890 0.97741 1.01995 1.21330 0.98462 0.90857 1.01629 0.88175 1.20818 0.76342 0.89240 0.83037 1.90729 1.45539 1.75129 1.29152 1.47740 1.72530 1.07255 1.08683 1.21627 1.01942 0.79564 1.02749 1.22096 1.01495 0.99631 0.84369 1.21822 1.02063 0.87701 0.94068 0.93150 0.91258 0.93167 0.92983 0.93622 0.96195 0.96815 0.93092 0.94304 0.90726 0.91372 0.91057 0.91572 0.90952 0.92915 0.91460 0.90404 0.92541 0.91054 0.89749 0.90139 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.94 37.16 0.33 -2.05 16 2 C 0.08 1.44 2.38 -67.71 -0.16 1.28 16 3 H 0.08 1.40 7.92 -51.93 -0.41 0.98 16 4 C -0.14 -3.02 3.72 -26.73 -0.10 -3.11 16 5 C 0.03 0.69 4.62 -27.88 -0.13 0.56 16 6 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 7 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 10 Si 0.89 22.43 29.54 -169.99 -5.02 17.40 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.53 -8.11 4.58 -226.69 -1.04 -9.15 16 15 C 0.05 0.66 5.19 -3.83 -0.02 0.64 16 16 C -0.11 -1.12 6.09 -26.65 -0.16 -1.28 16 17 C -0.12 -1.18 4.97 -26.61 -0.13 -1.31 16 18 C -0.10 -1.22 1.87 -91.69 -0.17 -1.39 16 19 H 0.10 1.06 7.75 -51.93 -0.40 0.66 16 20 C 0.52 6.97 6.96 -10.98 -0.08 6.90 16 21 O -0.53 -9.49 15.52 5.56 0.09 -9.40 16 22 N -0.63 -6.26 3.27 -189.52 -0.62 -6.88 16 23 C 0.08 0.72 10.46 59.85 0.63 1.35 16 24 C 0.07 0.41 9.92 59.85 0.59 1.00 16 25 C 0.07 1.12 3.09 -3.83 -0.01 1.11 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.29 6.65 -51.93 -0.35 0.95 16 28 H 0.05 0.86 6.54 -51.93 -0.34 0.52 16 29 H 0.05 1.17 6.75 -51.93 -0.35 0.82 16 30 H 0.05 1.00 6.77 -51.93 -0.35 0.65 16 31 H 0.02 0.55 6.76 -51.93 -0.35 0.20 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.04 0.59 6.89 -51.93 -0.36 0.23 16 35 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.55 5.30 -51.93 -0.28 0.27 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.08 0.82 7.35 -51.93 -0.38 0.44 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16 45 H 0.08 0.48 4.15 -51.93 -0.22 0.26 16 46 H 0.08 1.35 6.35 -51.93 -0.33 1.02 16 47 H 0.05 0.93 6.54 -51.93 -0.34 0.59 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -33.68 353.15 -8.56 -42.24 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.20 Total: -2.45 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 0.18 Total: -10.30 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.92 Total: -42.82 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.68 -8.56 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.615 kcal (2) G-P(sol) polarization free energy of solvation -33.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds