Wall clock time and date at job start Tue Mar 31 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46646 * 2 1 4 4 C 1.52996 * 109.46918 * 119.99607 * 2 1 3 5 5 C 1.53004 * 109.47297 * 185.00603 * 4 2 1 6 6 C 1.50693 * 109.47419 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00362 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99653 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00534 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46805 * 59.99661 * 10 8 6 12 12 H 1.48491 * 109.47625 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47337 * 300.00207 * 10 8 6 14 14 N 1.46899 * 109.47618 * 239.99890 * 2 1 3 15 15 C 1.46847 * 110.99756 * 306.04514 * 14 2 1 16 16 C 1.53039 * 109.52208 * 185.83812 * 15 14 2 17 17 C 1.53122 * 109.27731 * 300.82200 * 16 15 14 18 18 C 1.53121 * 109.16084 * 57.65321 * 17 16 15 19 19 H 1.08998 * 109.50319 * 62.28575 * 18 17 16 20 20 C 1.50698 * 109.49978 * 182.36421 * 18 17 16 21 21 O 1.21286 * 119.99908 * 85.82063 * 20 18 17 22 22 N 1.34774 * 119.99956 * 265.81401 * 20 18 17 23 23 C 1.46506 * 119.99956 * 185.02326 * 22 20 18 24 24 C 1.46497 * 120.00196 * 5.02953 * 22 20 18 25 25 C 1.46846 * 110.99906 * 70.25289 * 14 2 1 26 26 H 1.08997 * 109.46874 * 60.00500 * 1 2 3 27 27 H 1.09003 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47798 * 300.00118 * 1 2 3 29 29 H 1.09006 * 109.47253 * 305.00256 * 4 2 1 30 30 H 1.08996 * 109.47280 * 65.00633 * 4 2 1 31 31 H 1.09006 * 109.46686 * 300.00000 * 5 4 2 32 32 H 1.08996 * 109.46931 * 59.99816 * 5 4 2 33 33 H 0.96993 * 119.99687 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.46528 * 305.85329 * 15 14 2 35 35 H 1.09006 * 109.46291 * 65.82482 * 15 14 2 36 36 H 1.08994 * 109.49851 * 60.76065 * 16 15 14 37 37 H 1.09000 * 109.50509 * 180.88030 * 16 15 14 38 38 H 1.08998 * 109.52447 * 177.56032 * 17 16 15 39 39 H 1.08998 * 109.51894 * 297.74710 * 17 16 15 40 40 H 1.08998 * 109.46878 * 90.00357 * 23 22 20 41 41 H 1.08997 * 109.47020 * 210.00087 * 23 22 20 42 42 H 1.08995 * 109.47256 * 330.00388 * 23 22 20 43 43 H 1.08997 * 109.47462 * 59.04222 * 24 22 20 44 44 H 1.08999 * 109.47300 * 179.04663 * 24 22 20 45 45 H 1.09005 * 109.46755 * 299.03915 * 24 22 20 46 46 H 1.09007 * 109.46725 * 294.18054 * 25 14 2 47 47 H 1.09005 * 109.46046 * 54.14458 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6131 1.3139 6 6 4.0671 -1.3239 2.5440 7 1 3.3687 -1.8044 3.2131 8 6 5.4185 -1.3610 2.8154 9 7 6.2691 -0.7764 2.0002 10 14 6.0411 -2.2415 4.3405 11 1 5.6477 -3.6723 4.2814 12 1 7.5211 -2.1378 4.4025 13 1 5.4495 -1.6151 5.5500 14 7 2.0198 -0.6925 -1.1994 15 6 1.4347 -2.0350 -1.3077 16 6 2.0747 -2.7786 -2.4822 17 6 1.8321 -1.9901 -3.7722 18 6 2.4082 -0.5801 -3.6153 19 1 3.4856 -0.6422 -3.4619 20 6 2.1225 0.2213 -4.8591 21 8 1.0666 0.8070 -4.9739 22 7 3.0402 0.2874 -5.8438 23 6 2.8101 1.1536 -7.0028 24 6 4.2679 -0.5070 -5.7555 25 6 1.7586 0.0997 -2.4079 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.6053 -0.2616 2.1370 30 1 1.7517 -1.7714 1.2057 31 1 3.9995 -1.0727 0.4261 32 1 3.8531 0.4371 1.3575 33 1 7.2197 -0.8021 2.1913 34 1 1.6179 -2.5865 -0.3856 35 1 0.3606 -1.9508 -1.4730 36 1 3.1467 -2.8752 -2.3110 37 1 1.6291 -3.7693 -2.5720 38 1 2.3232 -2.4937 -4.6048 39 1 0.7610 -1.9267 -3.9643 40 1 3.2197 2.1438 -6.8033 41 1 3.3002 0.7273 -7.8780 42 1 1.7392 1.2342 -7.1892 43 1 4.0124 -1.5644 -5.6867 44 1 4.8755 -0.3371 -6.6444 45 1 4.8295 -0.2105 -4.8695 46 1 0.6829 0.1739 -2.5682 47 1 2.1770 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:37 Heat of formation + Delta-G solvation = -46.564668 kcal Electronic energy + Delta-G solvation = -23523.084797 eV Core-core repulsion = 20319.231487 eV Total energy + Delta-G solvation = -3203.853311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40853 -38.65990 -35.64335 -35.16160 -32.94531 -31.06412 -30.70609 -28.80829 -28.15788 -26.37318 -25.22338 -24.09908 -23.14566 -21.40287 -20.42863 -18.95332 -18.77942 -17.04026 -16.36409 -16.04105 -15.85069 -15.48865 -14.63447 -14.37932 -14.27612 -13.91356 -13.80694 -13.55034 -13.07822 -12.89761 -12.81976 -12.68300 -12.34004 -12.26247 -12.22895 -12.08931 -11.79602 -11.42390 -11.34586 -11.09874 -10.84176 -10.67391 -10.56566 -10.44010 -10.21557 -10.06812 -9.65548 -9.51611 -9.16591 -8.87613 -8.83421 -8.22053 -7.71469 -5.87728 -3.88823 2.55171 2.87103 3.38634 3.42926 3.45511 4.18044 4.54312 4.56562 4.84363 4.86186 4.91648 5.05116 5.12547 5.28242 5.32792 5.39026 5.46386 5.47419 5.48210 5.57213 5.60104 5.63169 5.68611 5.71945 5.84867 5.89907 5.96761 6.04757 6.13218 6.19956 6.29832 6.35393 6.37011 6.43012 6.53910 6.71682 6.91930 7.17532 7.31910 7.57935 7.62263 7.86223 8.08942 8.09352 8.23789 8.58466 9.20025 9.73666 11.23211 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.004086 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.963527 B = 6851.716924 C = 7512.608199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.077 0.923 4 C -0.101 4.101 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.517 5.517 15 C 0.050 3.950 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.103 4.103 19 H 0.102 0.898 20 C 0.523 3.477 21 O -0.542 6.542 22 N -0.626 5.626 23 C 0.084 3.916 24 C 0.078 3.922 25 C 0.074 3.926 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.008 0.992 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.042 0.958 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -0.702 -16.920 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.139 4.139 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.240 5.240 15 C -0.077 4.077 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.125 4.125 19 H 0.121 0.879 20 C 0.311 3.689 21 O -0.419 6.419 22 N -0.360 5.360 23 C -0.059 4.059 24 C -0.065 4.065 25 C -0.054 4.054 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.780 -0.402 -16.968 18.277 hybrid contribution -0.251 -0.321 0.682 0.794 sum -7.031 -0.722 -16.287 17.754 Atomic orbital electron populations 1.22510 0.98808 1.01684 1.01411 1.21849 0.91166 0.98523 0.90937 0.90522 1.21721 1.00761 0.98308 0.93128 1.18990 0.88113 0.96646 0.96928 1.21314 0.91818 1.34074 1.08524 0.93209 1.24980 0.97125 0.95769 0.96428 1.69970 1.02173 1.44355 1.36930 0.86761 0.77575 0.80279 0.83946 1.20403 1.21419 1.20436 1.62007 1.58679 1.02059 1.01292 1.22153 0.95646 0.90618 0.99317 1.21581 1.02643 0.97681 0.93344 1.21475 1.00827 0.93205 0.98621 1.21361 1.03508 0.95633 0.91982 0.87942 1.20812 0.82979 0.80749 0.84356 1.90663 1.24741 1.46507 1.79966 1.47800 1.20880 1.45654 1.21672 1.21651 1.03034 0.93885 0.87315 1.21867 0.85998 0.95490 1.03179 1.21795 0.98483 0.96558 0.88597 0.93370 0.92596 0.92327 0.93338 0.93307 0.94980 0.97317 0.93225 0.89599 0.95237 0.90384 0.91496 0.91886 0.91853 0.92815 0.91400 0.90628 0.91791 0.90532 0.91265 0.93968 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 8.45 37.16 0.31 -2.44 16 2 C 0.08 1.46 2.31 -67.71 -0.16 1.30 16 3 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 4 C -0.10 -2.10 4.55 -26.73 -0.12 -2.22 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 6 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.52 -8.66 4.06 -226.69 -0.92 -9.58 16 15 C 0.05 0.76 4.54 -3.83 -0.02 0.74 16 16 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 17 C -0.10 -1.23 5.27 -26.61 -0.14 -1.37 16 18 C -0.10 -1.37 2.13 -91.69 -0.20 -1.57 16 19 H 0.10 1.35 6.43 -51.93 -0.33 1.01 16 20 C 0.52 7.21 6.68 -10.99 -0.07 7.13 16 21 O -0.54 -9.23 15.79 5.55 0.09 -9.14 16 22 N -0.63 -6.79 3.27 -189.52 -0.62 -7.42 16 23 C 0.08 0.75 10.45 59.85 0.63 1.38 16 24 C 0.08 0.62 9.54 59.85 0.57 1.19 16 25 C 0.07 1.15 4.08 -3.84 -0.02 1.13 16 26 H 0.05 0.69 6.82 -51.93 -0.35 0.34 16 27 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.99 6.23 -51.93 -0.32 0.67 16 31 H 0.03 0.89 7.75 -51.93 -0.40 0.48 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.41 6.13 -51.93 -0.32 1.09 16 35 H 0.03 0.42 6.58 -51.93 -0.34 0.08 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.63 7.43 -51.93 -0.39 0.25 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 42 H 0.07 0.77 7.36 -51.93 -0.38 0.39 16 43 H 0.06 0.46 7.41 -51.93 -0.38 0.08 16 44 H 0.08 0.43 7.79 -51.93 -0.40 0.03 16 45 H 0.07 0.58 7.28 -51.93 -0.38 0.20 16 46 H 0.04 0.68 6.57 -51.93 -0.34 0.34 16 47 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -32.80 357.96 -8.69 -41.49 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.43 Total: -1.96 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.80 Total: -43.35 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.80 -8.69 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.076 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds