Wall clock time and date at job start Tue Mar 31 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47285 * 2 1 4 4 C 1.52995 * 109.47063 * 120.00242 * 2 1 3 5 5 C 1.53002 * 109.47489 * 187.20637 * 4 2 1 6 6 C 1.50694 * 109.47549 * 175.05561 * 5 4 2 7 7 H 1.08003 * 119.99858 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00256 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99902 * 179.72709 * 8 6 5 11 11 H 1.48503 * 109.47084 * 270.27263 * 10 8 6 12 12 H 1.48499 * 109.47197 * 30.27311 * 10 8 6 13 13 H 1.48497 * 109.46815 * 150.27515 * 10 8 6 14 14 N 1.46899 * 109.47265 * 240.00197 * 2 1 3 15 15 C 1.46850 * 111.00180 * 71.43779 * 14 2 1 16 16 C 1.53036 * 109.52503 * 174.16229 * 15 14 2 17 17 C 1.53120 * 109.27886 * 59.17760 * 16 15 14 18 18 C 1.53121 * 109.16276 * 302.34642 * 17 16 15 19 19 H 1.09002 * 109.50193 * 297.71230 * 18 17 16 20 20 C 1.50693 * 109.53628 * 177.61356 * 18 17 16 21 21 O 1.21282 * 120.00139 * 247.77457 * 20 18 17 22 22 N 1.34776 * 120.00011 * 67.77095 * 20 18 17 23 23 C 1.46496 * 120.00165 * 185.69879 * 22 20 18 24 24 C 1.46502 * 120.00008 * 5.70461 * 22 20 18 25 25 C 1.46846 * 111.00038 * 307.22789 * 14 2 1 26 26 H 1.08999 * 109.47253 * 299.99991 * 1 2 3 27 27 H 1.09009 * 109.46869 * 59.99925 * 1 2 3 28 28 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47198 * 67.20738 * 4 2 1 30 30 H 1.08996 * 109.47322 * 307.20542 * 4 2 1 31 31 H 1.09000 * 109.46835 * 55.05697 * 5 4 2 32 32 H 1.09003 * 109.47069 * 295.05976 * 5 4 2 33 33 H 0.96999 * 119.99512 * 359.73075 * 9 8 6 34 34 H 1.09002 * 109.46138 * 294.18243 * 15 14 2 35 35 H 1.08994 * 109.45936 * 54.14596 * 15 14 2 36 36 H 1.09001 * 109.49956 * 299.23866 * 16 15 14 37 37 H 1.08992 * 109.50446 * 179.12258 * 16 15 14 38 38 H 1.08998 * 109.51974 * 182.44251 * 17 16 15 39 39 H 1.09001 * 109.57246 * 62.28573 * 17 16 15 40 40 H 1.09006 * 109.47511 * 89.99890 * 23 22 20 41 41 H 1.08997 * 109.47649 * 210.00230 * 23 22 20 42 42 H 1.09009 * 109.47339 * 330.00440 * 23 22 20 43 43 H 1.08999 * 109.46909 * 84.68904 * 24 22 20 44 44 H 1.08996 * 109.47035 * 204.69610 * 24 22 20 45 45 H 1.09001 * 109.46769 * 324.68835 * 24 22 20 46 46 H 1.08998 * 109.46468 * 305.85509 * 25 14 2 47 47 H 1.09003 * 109.46345 * 65.83002 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5592 -0.5665 1.3430 6 6 4.0470 -1.1715 2.6341 7 1 3.3437 -1.6210 3.3195 8 6 5.3910 -1.1502 2.9410 9 7 6.2474 -0.6023 2.1067 10 14 5.9947 -1.8933 4.5450 11 1 5.9839 -0.8550 5.6066 12 1 5.1023 -3.0130 4.9386 13 1 7.3780 -2.4025 4.3648 14 7 2.0196 -0.6924 -1.1994 15 6 1.7836 0.1123 -2.4049 16 6 2.4334 -0.5702 -3.6108 17 6 1.8352 -1.9691 -3.7830 18 6 2.0518 -2.7704 -2.4963 19 1 3.1205 -2.8864 -2.3155 20 6 1.4147 -4.1289 -2.6354 21 8 0.4462 -4.4160 -1.9642 22 7 1.9211 -5.0248 -3.5056 23 6 1.2304 -6.2966 -3.7326 24 6 3.1623 -4.7269 -4.2245 25 6 1.4131 -2.0241 -1.3228 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7856 -1.7794 1.1870 30 1 1.5752 -0.2874 2.1345 31 1 3.8188 0.4918 1.3168 32 1 4.0290 -1.0769 0.5023 33 1 5.9339 -0.2168 1.2737 34 1 0.7110 0.2058 -2.5749 35 1 2.2176 1.1030 -2.2709 36 1 3.5080 -0.6515 -3.4474 37 1 2.2448 0.0193 -4.5079 38 1 2.3259 -2.4752 -4.6143 39 1 0.7673 -1.8871 -3.9857 40 1 0.5160 -6.1818 -4.5479 41 1 1.9589 -7.0643 -3.9933 42 1 0.7021 -6.5902 -2.8255 43 1 4.0160 -4.9974 -3.6031 44 1 3.1917 -5.2995 -5.1515 45 1 3.2027 -3.6621 -4.4538 46 1 1.5780 -2.5849 -0.4029 47 1 0.3422 -1.9206 -1.4980 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:40 Heat of formation + Delta-G solvation = -44.797739 kcal Electronic energy + Delta-G solvation = -23762.386755 eV Core-core repulsion = 20558.610064 eV Total energy + Delta-G solvation = -3203.776691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48854 -38.67294 -35.70884 -35.28174 -33.23792 -31.35250 -30.39466 -28.75506 -28.10276 -26.43945 -24.93091 -23.93740 -23.34827 -21.58647 -20.30374 -19.28660 -18.89437 -16.93437 -16.56912 -16.46594 -15.79181 -15.48690 -14.88649 -14.36326 -14.11682 -13.96557 -13.63829 -13.49817 -13.25051 -12.87919 -12.72766 -12.67068 -12.57796 -12.41841 -12.23419 -12.12209 -11.92386 -11.57508 -11.28630 -10.97471 -10.84399 -10.73093 -10.60918 -10.40936 -10.08768 -9.96174 -9.71292 -9.62478 -9.48277 -8.80209 -8.34949 -8.17244 -7.81702 -6.20976 -3.87780 2.60198 2.88731 3.50590 3.54712 3.70292 4.11744 4.47646 4.65484 4.70818 4.83917 4.88493 4.98710 5.08503 5.20629 5.24461 5.35249 5.40547 5.44679 5.46061 5.51807 5.56418 5.61135 5.64285 5.67037 5.73231 5.79529 5.88553 5.98880 6.06747 6.11207 6.26968 6.28496 6.31209 6.37580 6.42241 6.61942 6.83385 7.18600 7.21412 7.47557 7.52284 7.69011 7.87812 8.12527 8.42110 8.64993 9.06592 9.83827 11.20098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014390 B = 0.004846 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.270583 B = 5776.656948 C = 6617.691729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.077 0.923 4 C -0.096 4.096 5 C 0.019 3.981 6 C -0.600 4.600 7 H 0.044 0.956 8 C 0.014 3.986 9 N -0.918 5.918 10 Si 1.068 2.932 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.286 1.286 14 N -0.521 5.521 15 C 0.052 3.948 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.104 4.104 19 H 0.106 0.894 20 C 0.522 3.478 21 O -0.538 6.538 22 N -0.625 5.625 23 C 0.084 3.916 24 C 0.066 3.934 25 C 0.076 3.924 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.000 1.000 32 H 0.019 0.981 33 H 0.270 0.730 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -4.732 -16.940 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.134 4.134 5 C -0.018 4.018 6 C -0.638 4.638 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.555 5.555 10 Si 0.897 3.103 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.126 4.126 19 H 0.124 0.876 20 C 0.310 3.690 21 O -0.414 6.414 22 N -0.360 5.360 23 C -0.058 4.058 24 C -0.077 4.077 25 C -0.053 4.053 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.734 -5.241 -15.620 18.200 hybrid contribution -2.193 0.283 -1.054 2.449 sum -9.927 -4.958 -16.673 20.028 Atomic orbital electron populations 1.22503 0.98604 1.01997 1.01297 1.21870 0.91386 0.98313 0.90913 0.90459 1.21601 0.99801 0.98667 0.93321 1.19093 0.89978 0.95792 0.96903 1.22186 0.94970 1.41184 1.05484 0.93767 1.25747 0.93460 0.96184 1.03559 1.70723 1.37188 1.36428 1.11155 0.83572 0.75696 0.76088 0.74968 1.21629 1.21651 1.21137 1.62009 1.58441 1.02121 1.01900 1.22098 0.97911 0.97232 0.90399 1.21574 1.01440 0.94827 0.97355 1.21713 1.01388 0.96246 0.95720 1.21339 1.02586 0.91138 0.97515 0.87572 1.20765 0.83618 0.86313 0.78273 1.90680 1.27578 1.79102 1.44046 1.47721 1.26132 1.18386 1.43735 1.21620 0.97209 0.84762 1.02232 1.22118 0.85796 1.03087 0.96689 1.21818 0.95789 0.90063 0.97597 0.92246 0.93497 0.92312 0.93142 0.93073 0.98173 0.96239 0.91987 0.95304 0.90778 0.90521 0.91450 0.90881 0.91952 0.93029 0.91370 0.90469 0.92165 0.91013 0.89803 0.89535 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 8.42 37.15 0.31 -2.49 16 2 C 0.08 1.47 2.28 -67.72 -0.15 1.31 16 3 H 0.08 1.38 7.95 -51.93 -0.41 0.97 16 4 C -0.10 -2.08 4.60 -26.73 -0.12 -2.21 16 5 C 0.02 0.51 4.13 -27.88 -0.12 0.40 16 6 C -0.60 -17.78 9.11 -34.44 -0.31 -18.09 16 7 H 0.04 1.30 7.74 -52.48 -0.41 0.90 16 8 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 9 N -0.92 -28.90 13.65 55.43 0.76 -28.14 16 10 Si 1.07 26.31 29.90 -169.99 -5.08 21.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 N -0.52 -8.64 4.23 -226.70 -0.96 -9.60 16 15 C 0.05 0.69 5.16 -3.83 -0.02 0.67 16 16 C -0.11 -1.26 6.09 -26.65 -0.16 -1.42 16 17 C -0.11 -1.23 4.98 -26.61 -0.13 -1.36 16 18 C -0.10 -1.44 1.87 -91.69 -0.17 -1.61 16 19 H 0.11 1.52 7.74 -51.93 -0.40 1.12 16 20 C 0.52 7.64 6.96 -10.99 -0.08 7.57 16 21 O -0.54 -9.80 15.52 5.56 0.09 -9.71 16 22 N -0.63 -7.09 3.27 -189.52 -0.62 -7.71 16 23 C 0.08 0.80 10.46 59.84 0.63 1.43 16 24 C 0.07 0.53 9.91 59.85 0.59 1.12 16 25 C 0.08 1.24 3.14 -3.83 -0.01 1.23 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.64 6.87 -51.92 -0.36 0.28 16 28 H 0.06 0.92 6.45 -51.93 -0.33 0.59 16 29 H 0.05 1.12 6.20 -51.93 -0.32 0.80 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.00 0.00 8.01 -51.93 -0.42 -0.42 16 32 H 0.02 0.54 7.82 -51.93 -0.41 0.13 16 33 H 0.27 8.48 7.22 -40.82 -0.29 8.19 16 34 H 0.03 0.37 6.92 -51.93 -0.36 0.01 16 35 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.63 5.32 -51.93 -0.28 0.35 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 42 H 0.08 0.87 7.35 -51.92 -0.38 0.49 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.41 8.03 -51.93 -0.42 -0.01 16 45 H 0.08 0.63 4.18 -51.93 -0.22 0.42 16 46 H 0.09 1.67 6.15 -51.93 -0.32 1.35 16 47 H 0.04 0.68 6.42 -51.93 -0.33 0.34 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -34.34 353.91 -8.58 -42.92 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.25 Total: -1.18 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.15 Total: -13.14 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.82 Total: -45.45 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.08 Total: 21.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.34 -8.58 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.881 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds