Wall clock time and date at job start Tue Mar 31 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46660 * 2 1 4 4 C 1.50697 * 109.47138 * 240.00643 * 2 1 3 5 5 O 1.21276 * 120.00218 * 7.88821 * 4 2 1 6 6 N 1.34776 * 119.99896 * 187.89847 * 4 2 1 7 7 C 1.47080 * 120.88326 * 3.17518 * 6 4 2 8 8 C 1.53693 * 108.27771 * 128.75642 * 7 6 4 9 9 N 1.46901 * 109.25073 * 54.08584 * 8 7 6 10 10 C 1.46904 * 110.99543 * 172.60430 * 9 8 7 11 11 H 1.09005 * 109.47045 * 173.04654 * 10 9 8 12 12 C 1.53003 * 109.47022 * 53.04967 * 10 9 8 13 13 C 1.52998 * 109.47618 * 293.05013 * 10 9 8 14 14 C 1.53002 * 109.46725 * 295.83175 * 13 10 9 15 15 C 1.50702 * 109.46673 * 179.97438 * 14 13 10 16 16 H 1.08004 * 120.00451 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00131 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00227 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99663 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47072 * 89.99813 * 19 17 15 21 21 H 1.48498 * 109.47026 * 209.99967 * 19 17 15 22 22 H 1.48499 * 109.47119 * 330.00008 * 19 17 15 23 23 C 1.46898 * 111.27140 * 296.75268 * 9 8 7 24 24 C 1.47082 * 120.88229 * 183.45853 * 6 4 2 25 25 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47443 * 299.99202 * 1 2 3 27 27 H 1.09000 * 109.47341 * 60.00224 * 1 2 3 28 28 H 1.09000 * 109.47341 * 119.99776 * 2 1 3 29 29 H 1.09000 * 109.47029 * 184.21324 * 3 2 1 30 30 H 1.08995 * 109.47813 * 304.22025 * 3 2 1 31 31 H 1.09005 * 109.47040 * 64.22282 * 3 2 1 32 32 H 1.09001 * 109.62812 * 248.53142 * 7 6 4 33 33 H 1.09004 * 109.62372 * 9.10747 * 7 6 4 34 34 H 1.08998 * 109.64885 * 294.08318 * 8 7 6 35 35 H 1.09001 * 109.44435 * 173.95956 * 8 7 6 36 36 H 1.08998 * 109.47568 * 299.99958 * 12 10 9 37 37 H 1.09007 * 109.46866 * 60.00164 * 12 10 9 38 38 H 1.08998 * 109.47034 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.46674 * 55.82732 * 13 10 9 40 40 H 1.08999 * 109.47470 * 175.82967 * 13 10 9 41 41 H 1.08997 * 109.47182 * 299.99246 * 14 13 10 42 42 H 1.08993 * 109.47052 * 60.00020 * 14 13 10 43 43 H 0.97005 * 120.00188 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.49436 * 303.15129 * 23 9 8 45 45 H 1.09003 * 109.51570 * 183.08310 * 23 9 8 46 46 H 1.09000 * 109.62673 * 350.89348 * 24 6 4 47 47 H 1.08999 * 109.62443 * 111.47029 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.2537 -1.0446 -2.0981 6 7 3.3470 -0.9741 -1.3668 7 6 4.2989 -0.6401 -0.2966 8 6 5.1372 -1.8911 0.0108 9 7 5.7477 -2.3823 -1.2318 10 6 6.6960 -3.4703 -0.9580 11 1 7.0402 -3.8979 -1.8998 12 6 6.0035 -4.5538 -0.1289 13 6 7.8931 -2.9200 -0.1801 14 6 8.6465 -1.9116 -1.0499 15 6 9.8252 -1.3691 -0.2835 16 1 10.0174 -1.7092 0.7235 17 6 10.6582 -0.4386 -0.8676 18 7 11.6865 0.0352 -0.1986 19 14 10.3261 0.1490 -2.6094 20 1 9.4363 1.3372 -2.5698 21 1 11.6093 0.5132 -3.2621 22 1 9.6688 -0.9361 -3.3811 23 6 4.7246 -2.8060 -2.1970 24 6 3.8686 -1.5981 -2.5923 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1273 1.4435 -0.0755 30 1 1.6162 1.9778 -0.8497 31 1 1.7396 1.9340 0.9254 32 1 4.9506 0.1694 -0.6257 33 1 3.7535 -0.3347 0.5964 34 1 4.4976 -2.6662 0.4329 35 1 5.9203 -1.6367 0.7250 36 1 5.6593 -4.1264 0.8128 37 1 5.1508 -4.9460 -0.6832 38 1 6.7070 -5.3613 0.0739 39 1 7.5417 -2.4270 0.7262 40 1 8.5604 -3.7393 0.0873 41 1 8.9979 -2.4047 -1.9563 42 1 7.9791 -1.0924 -1.3172 43 1 12.2728 0.6896 -0.6097 44 1 4.0908 -3.5684 -1.7441 45 1 5.2082 -3.2151 -3.0842 46 1 3.0386 -1.9265 -3.2178 47 1 4.4797 -0.8790 -3.1377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:01 Heat of formation + Delta-G solvation = -42.467095 kcal Electronic energy + Delta-G solvation = -23630.492737 eV Core-core repulsion = 20426.817110 eV Total energy + Delta-G solvation = -3203.675627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51723 -38.69676 -35.70063 -34.79065 -33.22422 -31.70036 -31.00424 -29.61379 -27.39623 -26.78703 -25.40203 -24.01238 -23.40182 -21.45617 -20.52021 -19.57906 -18.54023 -17.37324 -16.60068 -16.27947 -15.61395 -15.47697 -14.85402 -14.59059 -14.30894 -14.24447 -14.09888 -13.54078 -13.20371 -12.90068 -12.71454 -12.54500 -12.46683 -12.21280 -12.11088 -12.04806 -11.99923 -11.72589 -11.43811 -11.40194 -11.22775 -11.11024 -10.91489 -10.76333 -10.36087 -9.91882 -9.73009 -9.63547 -9.50470 -9.06748 -8.76962 -8.47023 -7.99539 -5.98428 -3.95022 2.54422 2.88979 3.36452 3.43524 3.49732 3.99873 4.29179 4.52023 4.61836 4.74823 4.81622 4.95456 5.05447 5.11440 5.19423 5.25286 5.30282 5.37420 5.38061 5.47173 5.50265 5.51722 5.54134 5.59621 5.68799 5.72116 5.77414 5.86065 5.94613 5.99878 6.01400 6.03825 6.11411 6.21369 6.41219 6.46004 6.63310 7.01235 7.23304 7.26388 7.39243 7.48065 7.64299 7.89387 8.08930 8.60876 9.07346 9.65724 11.15295 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.004435 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.181966 B = 6311.980464 C = 6868.743720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.518 3.482 5 O -0.549 6.549 6 N -0.610 5.610 7 C 0.108 3.892 8 C 0.037 3.963 9 N -0.521 5.521 10 C 0.079 3.921 11 H 0.079 0.921 12 C -0.183 4.183 13 C -0.093 4.093 14 C -0.005 4.005 15 C -0.518 4.518 16 H 0.068 0.932 17 C 0.065 3.935 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.265 1.265 23 C 0.042 3.958 24 C 0.115 3.885 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.035 0.965 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 -2.455 0.661 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.206 4.206 4 C 0.307 3.693 5 O -0.427 6.427 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.092 4.092 9 N -0.246 5.246 10 C -0.029 4.029 11 H 0.097 0.903 12 C -0.242 4.242 13 C -0.131 4.131 14 C -0.043 4.043 15 C -0.556 4.556 16 H 0.086 0.914 17 C -0.135 4.135 18 N -0.548 5.548 19 Si 0.709 3.291 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.189 1.189 23 C -0.087 4.087 24 C -0.007 4.007 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.852 -2.124 -0.036 19.966 hybrid contribution -0.277 -0.329 -0.462 0.631 sum -20.129 -2.453 -0.497 20.284 Atomic orbital electron populations 1.21607 0.92591 1.02556 1.02117 1.21297 0.98155 0.97535 0.96668 1.21880 1.02006 0.93801 1.02907 1.20711 0.81505 0.78702 0.88429 1.90659 1.55003 1.53356 1.43656 1.48215 1.06747 1.60920 1.18463 1.22139 0.91155 0.98148 0.90073 1.22624 0.97811 0.95649 0.93078 1.62085 1.15796 1.35563 1.11106 1.21933 0.93042 0.88849 0.99082 0.90310 1.22481 1.00780 1.00168 1.00784 1.21540 0.93887 0.99282 0.98356 1.19462 0.95108 0.94642 0.95058 1.21242 1.09240 1.23233 1.01923 0.91430 1.25019 0.94863 0.96048 0.97611 1.69926 1.16288 1.31027 1.37574 0.86750 0.77278 0.79488 0.85561 1.20426 1.21803 1.18943 1.22454 0.93343 0.95805 0.97123 1.21717 0.97488 0.94938 0.86568 0.92301 0.92077 0.91836 0.88771 0.91444 0.92047 0.91314 0.89897 0.89372 0.94526 0.88363 0.92512 0.93515 0.92046 0.92799 0.92570 0.97291 0.95639 0.92930 0.94731 0.89724 0.89074 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.52 37.16 0.32 -0.86 16 2 C -0.12 -1.08 2.41 -91.77 -0.22 -1.30 16 3 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 4 C 0.52 6.63 7.00 -10.99 -0.08 6.55 16 5 O -0.55 -8.83 15.43 5.56 0.09 -8.74 16 6 N -0.61 -7.51 3.00 -172.19 -0.52 -8.03 16 7 C 0.11 1.21 5.12 -3.37 -0.02 1.19 16 8 C 0.04 0.47 4.64 -3.46 -0.02 0.45 16 9 N -0.52 -7.47 3.98 -226.05 -0.90 -8.37 16 10 C 0.08 1.18 2.31 -67.71 -0.16 1.02 16 11 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 12 C -0.18 -2.30 8.44 37.16 0.31 -1.99 16 13 C -0.09 -1.72 4.56 -26.73 -0.12 -1.85 16 14 C -0.01 -0.12 3.92 -27.88 -0.11 -0.23 16 15 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 16 H 0.07 2.05 7.99 -52.48 -0.42 1.63 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.07 13.96 55.43 0.77 -27.30 16 19 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 23 C 0.04 0.52 5.28 -3.71 -0.02 0.50 16 24 C 0.12 1.46 6.60 -3.61 -0.02 1.44 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.64 8.01 -51.93 -0.42 0.22 16 28 H 0.09 0.75 7.09 -51.93 -0.37 0.38 16 29 H 0.07 0.57 6.04 -51.93 -0.31 0.25 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.09 0.77 5.17 -51.93 -0.27 0.50 16 34 H 0.04 0.44 6.67 -51.93 -0.35 0.09 16 35 H 0.10 1.33 6.14 -51.93 -0.32 1.01 16 36 H 0.06 0.69 6.49 -51.93 -0.34 0.36 16 37 H 0.05 0.55 6.90 -51.92 -0.36 0.19 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.99 6.27 -51.93 -0.33 0.66 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 42 H 0.03 0.60 7.16 -51.93 -0.37 0.22 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.03 0.44 6.99 -51.93 -0.36 0.07 16 45 H 0.08 1.01 7.98 -51.93 -0.41 0.60 16 46 H 0.09 1.18 7.05 -51.93 -0.37 0.81 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -32.47 351.87 -8.48 -40.95 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.32 Total: -2.03 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.23 Total: -9.08 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.64 Total: -43.70 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.47 -8.48 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.521 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds