Wall clock time and date at job start Tue Mar 31 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.50704 * 109.46977 * 119.99462 * 2 1 3 5 5 O 1.21274 * 119.99904 * 352.04266 * 4 2 1 6 6 N 1.34776 * 119.99795 * 172.03514 * 4 2 1 7 7 C 1.47074 * 120.88311 * 356.63163 * 6 4 2 8 8 C 1.53237 * 108.52456 * 231.20752 * 7 6 4 9 9 N 1.46907 * 109.33746 * 306.17012 * 8 7 6 10 10 C 1.46903 * 110.99915 * 187.25227 * 9 8 7 11 11 H 1.08999 * 109.47061 * 299.10524 * 10 9 8 12 12 C 1.52991 * 109.47140 * 59.10549 * 10 9 8 13 13 C 1.53002 * 109.47071 * 179.10842 * 10 9 8 14 14 C 1.52995 * 109.47267 * 179.04088 * 13 10 9 15 15 C 1.50697 * 109.47384 * 178.41040 * 14 13 10 16 16 H 1.08003 * 120.00005 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00238 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00115 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47034 * 60.00494 * 19 17 15 21 21 H 1.48499 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47234 * 300.00501 * 19 17 15 23 23 C 1.46897 * 111.26773 * 63.10411 * 9 8 7 24 24 C 1.47082 * 120.87732 * 176.65431 * 6 4 2 25 25 H 1.09010 * 109.47295 * 300.00478 * 1 2 3 26 26 H 1.08999 * 109.46835 * 59.99967 * 1 2 3 27 27 H 1.08994 * 109.47454 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47019 * 239.99828 * 2 1 3 29 29 H 1.09000 * 109.47746 * 65.05945 * 3 2 1 30 30 H 1.09002 * 109.47342 * 185.06170 * 3 2 1 31 31 H 1.09003 * 109.46981 * 305.05618 * 3 2 1 32 32 H 1.09000 * 109.62941 * 111.49446 * 7 6 4 33 33 H 1.09001 * 109.63253 * 350.91839 * 7 6 4 34 34 H 1.09003 * 109.49619 * 186.21292 * 8 7 6 35 35 H 1.09004 * 109.49555 * 66.12927 * 8 7 6 36 36 H 1.08999 * 109.47164 * 60.00038 * 12 10 9 37 37 H 1.09000 * 109.47213 * 179.97438 * 12 10 9 38 38 H 1.08996 * 109.47611 * 299.99873 * 12 10 9 39 39 H 1.09000 * 109.47418 * 59.03310 * 13 10 9 40 40 H 1.09002 * 109.46915 * 299.04012 * 13 10 9 41 41 H 1.09000 * 109.46926 * 298.41078 * 14 13 10 42 42 H 1.08995 * 109.47367 * 58.40421 * 14 13 10 43 43 H 0.96996 * 120.00152 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49891 * 56.85289 * 23 9 8 45 45 H 1.09000 * 109.49329 * 176.93520 * 23 9 8 46 46 H 1.08999 * 109.62403 * 248.49988 * 24 6 4 47 47 H 1.08992 * 109.62935 * 9.08550 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.2537 -1.0435 2.0986 6 7 3.3467 -0.9754 1.3662 7 6 4.2978 -0.6465 0.2937 8 6 5.1355 -1.8924 -0.0132 9 7 5.7459 -2.3861 1.2285 10 6 6.6929 -3.4748 0.9529 11 1 6.1653 -4.3053 0.4840 12 6 7.7894 -2.9711 0.0123 13 6 7.3233 -3.9467 2.2647 14 6 8.2917 -5.0965 1.9806 15 6 8.9419 -5.5354 3.2673 16 1 8.6893 -5.0436 4.1951 17 6 9.8584 -6.5654 3.2604 18 7 10.1657 -7.1646 2.1307 19 14 10.6648 -7.1089 4.8552 20 1 9.6205 -7.5644 5.8078 21 1 11.6047 -8.2250 4.5795 22 1 11.4106 -5.9689 5.4464 23 6 4.7227 -2.8100 2.1934 24 6 3.8680 -1.6017 2.5907 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.7526 1.9296 0.9318 30 1 3.1262 1.4439 -0.0907 31 1 1.6046 1.9818 -0.8413 32 1 4.9512 0.1630 0.6192 33 1 3.7518 -0.3432 -0.5997 34 1 5.9187 -1.6374 -0.7271 35 1 4.4950 -2.6662 -0.4363 36 1 8.3171 -2.1406 0.4812 37 1 8.4923 -3.7788 -0.1918 38 1 7.3403 -2.6350 -0.9222 39 1 6.5406 -4.2896 2.9414 40 1 7.8653 -3.1206 2.7252 41 1 7.7447 -5.9332 1.5461 42 1 9.0584 -4.7617 1.2819 43 1 10.8102 -7.8895 2.1258 44 1 4.0878 -3.5711 1.7397 45 1 5.2064 -3.2206 3.0798 46 1 4.4801 -0.8840 3.1370 47 1 3.0379 -1.9301 3.2160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:04 Heat of formation + Delta-G solvation = -45.122795 kcal Electronic energy + Delta-G solvation = -23058.777994 eV Core-core repulsion = 19854.987208 eV Total energy + Delta-G solvation = -3203.790786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53260 -38.55635 -35.75725 -34.84563 -33.39427 -31.69940 -31.34959 -28.83993 -27.49969 -26.87408 -25.34682 -23.86868 -23.18836 -21.68379 -20.77921 -19.27741 -18.86441 -17.54144 -16.46941 -16.06988 -15.69993 -15.07294 -14.95613 -14.68584 -14.40709 -14.34692 -14.13753 -13.98133 -13.26034 -12.79146 -12.65458 -12.56379 -12.33454 -12.28964 -12.13495 -11.79663 -11.75211 -11.48425 -11.38877 -11.27466 -11.15052 -11.11884 -10.91115 -10.69793 -10.53411 -10.14814 -9.79995 -9.58322 -9.31659 -9.05652 -8.81434 -8.32967 -8.10673 -5.99875 -4.01765 2.49855 2.83196 3.33630 3.37896 3.40583 3.97596 4.21397 4.46640 4.54145 4.66766 4.74914 4.88897 5.00114 5.07600 5.17364 5.28753 5.31067 5.36015 5.36973 5.44625 5.47614 5.53157 5.59486 5.64553 5.70478 5.76518 5.84273 5.88177 5.90368 5.97412 6.02146 6.27144 6.35120 6.37880 6.61357 6.68436 6.71605 7.08917 7.24697 7.28894 7.39386 7.68193 7.83306 8.00337 8.04506 8.43746 9.05125 9.62160 11.11452 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.003056 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.088113 B = 9158.745141 C = 9606.136705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.517 3.483 5 O -0.545 6.545 6 N -0.611 5.611 7 C 0.111 3.889 8 C 0.034 3.966 9 N -0.532 5.532 10 C 0.082 3.918 11 H 0.035 0.965 12 C -0.143 4.143 13 C -0.103 4.103 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.037 3.963 24 C 0.116 3.884 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.011 0.989 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.034 0.966 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 16.298 -7.908 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.204 4.204 4 C 0.305 3.695 5 O -0.422 6.422 6 N -0.345 5.345 7 C -0.012 4.012 8 C -0.095 4.095 9 N -0.258 5.258 10 C -0.025 4.025 11 H 0.053 0.947 12 C -0.200 4.200 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.092 4.092 24 C -0.006 4.006 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.030 0.970 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.635 16.361 -7.306 23.135 hybrid contribution 0.196 -1.158 0.402 1.242 sum -14.439 15.203 -6.903 22.074 Atomic orbital electron populations 1.21611 0.92508 1.02717 1.02119 1.21301 0.98276 0.97413 0.96703 1.21858 1.01664 0.93931 1.02916 1.20704 0.81526 0.78792 0.88443 1.90676 1.54896 1.53117 1.43546 1.48221 1.06755 1.61060 1.18450 1.21978 0.91266 0.97806 0.90159 1.22554 0.97582 0.96126 0.93258 1.62055 1.16156 1.36891 1.10677 1.21783 0.92274 0.90186 0.98292 0.94742 1.21913 0.98480 1.02184 0.97415 1.21762 0.98859 0.99833 0.93675 1.19136 0.93472 0.91867 0.97014 1.21218 1.23446 1.16995 0.94128 0.92796 1.25010 0.96802 0.96479 0.96134 1.69949 1.34032 1.24080 1.25546 0.86674 0.79286 0.78205 0.83931 1.20278 1.21326 1.20226 1.22556 0.92941 0.95597 0.98075 1.21761 0.97625 0.94863 0.86363 0.91788 0.92080 0.92180 0.88832 0.92068 0.91668 0.91360 0.90404 0.89505 0.88975 0.94827 0.92109 0.90867 0.93916 0.93375 0.92425 0.97014 0.96001 0.92988 0.94776 0.88277 0.90710 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.52 37.16 0.32 -0.79 16 2 C -0.12 -0.98 2.41 -91.77 -0.22 -1.20 16 3 C -0.15 -0.97 8.87 37.16 0.33 -0.64 16 4 C 0.52 6.33 6.99 -10.98 -0.08 6.25 16 5 O -0.54 -8.70 15.43 5.56 0.09 -8.61 16 6 N -0.61 -7.07 3.01 -172.47 -0.52 -7.59 16 7 C 0.11 1.02 5.21 -3.61 -0.02 1.01 16 8 C 0.03 0.38 5.38 -3.70 -0.02 0.36 16 9 N -0.53 -7.49 4.50 -226.34 -1.02 -8.51 16 10 C 0.08 1.36 2.20 -67.71 -0.15 1.21 16 11 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 12 C -0.14 -2.20 8.62 37.15 0.32 -1.88 16 13 C -0.10 -2.08 4.38 -26.73 -0.12 -2.20 16 14 C 0.02 0.57 4.69 -27.89 -0.13 0.44 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 16 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.04 0.51 5.33 -3.70 -0.02 0.49 16 24 C 0.12 1.47 6.61 -3.60 -0.02 1.45 16 25 H 0.06 0.60 8.01 -51.92 -0.42 0.19 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.66 7.08 -51.93 -0.37 0.29 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.39 6.07 -51.93 -0.32 0.07 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.59 5.07 -51.93 -0.26 0.32 16 34 H 0.09 0.94 5.92 -51.93 -0.31 0.63 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.28 6.42 -51.93 -0.33 0.94 16 38 H 0.04 0.54 6.24 -51.93 -0.32 0.22 16 39 H 0.05 0.96 6.14 -51.93 -0.32 0.64 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.02 0.57 6.37 -51.93 -0.33 0.24 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 1.46 5.83 -51.93 -0.30 1.16 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.25 7.05 -51.93 -0.37 0.88 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -31.86 354.81 -8.87 -40.73 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -8.26 Total: -3.04 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.22 Total: -8.91 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.80 Total: -42.18 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.86 -8.87 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.395 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds