Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00110 * 2 1 4 4 N 1.34770 * 120.00156 * 180.02562 * 2 1 3 5 5 C 1.46930 * 120.63066 * 355.09727 * 4 2 1 6 6 C 1.53188 * 108.77696 * 126.41181 * 5 4 2 7 7 C 1.53034 * 109.31396 * 54.63734 * 6 5 4 8 8 C 1.53045 * 109.52542 * 298.64084 * 7 6 5 9 9 H 1.09000 * 109.49370 * 301.40541 * 8 7 6 10 10 N 1.46905 * 109.49755 * 181.30866 * 8 7 6 11 11 C 1.46895 * 110.99970 * 188.56763 * 10 8 7 12 12 C 1.46904 * 110.99688 * 64.61841 * 10 8 7 13 13 H 1.09001 * 109.47183 * 306.41278 * 12 10 8 14 14 C 1.52994 * 109.47527 * 66.41515 * 12 10 8 15 15 C 1.53007 * 109.46954 * 186.41567 * 12 10 8 16 16 C 1.53001 * 109.47050 * 64.99786 * 15 12 10 17 17 C 1.50703 * 109.47223 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99421 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99956 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00026 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46826 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47122 * 120.00130 * 21 19 17 24 24 H 1.48498 * 109.47064 * 240.00036 * 21 19 17 25 25 C 1.46921 * 120.63272 * 175.11483 * 4 2 1 26 26 H 1.09000 * 109.47674 * 185.77274 * 1 2 3 27 27 H 1.09001 * 109.47413 * 305.77646 * 1 2 3 28 28 H 1.09008 * 109.47393 * 65.77067 * 1 2 3 29 29 H 1.08999 * 109.58663 * 6.62358 * 5 4 2 30 30 H 1.08994 * 109.58453 * 246.20370 * 5 4 2 31 31 H 1.09003 * 109.50162 * 294.68044 * 6 5 4 32 32 H 1.09003 * 109.52431 * 174.60097 * 6 5 4 33 33 H 1.09003 * 109.46398 * 58.65108 * 7 6 5 34 34 H 1.09005 * 109.46393 * 178.62617 * 7 6 5 35 35 H 1.08997 * 109.46917 * 60.00121 * 11 10 8 36 36 H 1.09002 * 109.46998 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.47589 * 300.00510 * 11 10 8 38 38 H 1.08994 * 109.47322 * 184.87967 * 14 12 10 39 39 H 1.09001 * 109.47236 * 304.87997 * 14 12 10 40 40 H 1.09006 * 109.47277 * 64.87678 * 14 12 10 41 41 H 1.09000 * 109.46977 * 184.99848 * 15 12 10 42 42 H 1.08994 * 109.46772 * 305.00141 * 15 12 10 43 43 H 1.09007 * 109.47461 * 300.00533 * 16 15 12 44 44 H 1.09003 * 109.47188 * 59.99928 * 16 15 12 45 45 H 0.96998 * 119.99906 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.59059 * 353.37823 * 25 4 2 47 47 H 1.09001 * 109.58483 * 113.66020 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 1.4643 -2.4453 0.1070 6 6 1.8863 -3.3466 -1.0576 7 6 3.4108 -3.4798 -1.0679 8 6 4.0433 -2.1009 -1.2702 9 1 3.6898 -1.6726 -2.2081 10 7 5.5058 -2.2335 -1.3113 11 6 6.1544 -0.9156 -1.3002 12 6 5.9304 -3.0195 -2.4775 13 1 5.4024 -3.9730 -2.4849 14 6 5.6068 -2.2475 -3.7581 15 6 7.4376 -3.2717 -2.4011 16 6 7.7469 -4.1497 -1.1869 17 6 9.2315 -4.3976 -1.1113 18 1 9.8885 -3.9718 -1.8552 19 6 9.7507 -5.1679 -0.0924 20 7 8.9504 -5.6867 0.8131 21 14 11.5908 -5.4757 0.0008 22 1 12.2658 -4.7868 -1.1283 23 1 12.1162 -4.9496 1.2863 24 1 11.8533 -6.9350 -0.0809 25 6 3.6460 -1.1856 -0.1082 26 1 -0.3634 -1.0224 0.1034 27 1 -0.3634 0.6008 0.8337 28 1 -0.3634 0.4218 -0.9372 29 1 0.3900 -2.2670 0.0603 30 1 1.7161 -2.9270 1.0517 31 1 1.5531 -2.9066 -1.9976 32 1 1.4359 -4.3320 -0.9374 33 1 3.7454 -3.8969 -0.1181 34 1 3.7122 -4.1403 -1.8809 35 1 5.8773 -0.3820 -0.3911 36 1 7.2365 -1.0430 -1.3308 37 1 5.8307 -0.3439 -2.1700 38 1 5.8418 -2.8658 -4.6244 39 1 4.5472 -1.9923 -3.7706 40 1 6.2008 -1.3341 -3.7918 41 1 7.7678 -3.7772 -3.3086 42 1 7.9607 -2.3204 -2.3043 43 1 7.4166 -3.6442 -0.2793 44 1 7.2237 -5.1010 -1.2837 45 1 9.3157 -6.2289 1.5297 46 1 4.0113 -0.1760 -0.2968 47 1 4.0758 -1.5622 0.8200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -34.843253 kcal Electronic energy + Delta-G solvation = -23592.877303 eV Core-core repulsion = 20389.532271 eV Total energy + Delta-G solvation = -3203.345032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42672 -38.70250 -36.67864 -33.66050 -32.61880 -32.02657 -30.49016 -29.13726 -28.78407 -25.93612 -25.07598 -24.93458 -22.38184 -21.53114 -20.46651 -19.11309 -18.72293 -17.43088 -16.32227 -16.08369 -15.67472 -15.42678 -14.70188 -14.62806 -14.36169 -14.26795 -13.64856 -13.46377 -13.34664 -12.99697 -12.84076 -12.72692 -12.32798 -12.24023 -12.04512 -11.79755 -11.58583 -11.47738 -11.26688 -11.17879 -10.93665 -10.87487 -10.63210 -10.42308 -10.30942 -10.05455 -9.88380 -9.57231 -9.19703 -8.87967 -8.72811 -8.23785 -7.77689 -5.89000 -3.90099 2.48885 2.85529 3.35995 3.43515 3.47480 4.19702 4.38595 4.53879 4.58194 4.76158 4.82667 5.01362 5.02242 5.15521 5.21253 5.29661 5.41711 5.46300 5.46791 5.53778 5.59894 5.66582 5.68145 5.73461 5.79898 5.85294 5.93410 5.99933 6.06719 6.20242 6.27411 6.31037 6.33694 6.41995 6.50853 6.68740 6.89195 7.27446 7.29703 7.51836 7.56386 7.84980 8.04219 8.06611 8.21682 8.56969 9.18977 9.72742 11.21934 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.003724 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.537971 B = 7517.104644 C = 7680.539805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.511 3.489 3 O -0.551 6.551 4 N -0.610 5.610 5 C 0.099 3.901 6 C -0.133 4.133 7 C -0.115 4.115 8 C 0.072 3.928 9 H 0.041 0.959 10 N -0.514 5.514 11 C 0.016 3.984 12 C 0.080 3.920 13 H 0.080 0.920 14 C -0.185 4.185 15 C -0.103 4.103 16 C 0.030 3.970 17 C -0.518 4.518 18 H 0.051 0.949 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.114 3.886 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.009 0.991 45 H 0.257 0.743 46 H 0.091 0.909 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.083 6.728 -3.788 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.300 3.700 3 O -0.429 6.429 4 N -0.344 5.344 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.153 4.153 8 C -0.037 4.037 9 H 0.059 0.941 10 N -0.237 5.237 11 C -0.132 4.132 12 C -0.028 4.028 13 H 0.098 0.902 14 C -0.244 4.244 15 C -0.141 4.141 16 C -0.007 4.007 17 C -0.557 4.557 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.714 3.286 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.008 4.008 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.604 6.934 -3.198 20.110 hybrid contribution 0.808 0.060 -0.661 1.046 sum -17.797 6.994 -3.860 19.507 Atomic orbital electron populations 1.22036 0.92110 1.04550 1.05162 1.20776 0.90553 0.83120 0.75597 1.90715 1.70672 1.31127 1.50429 1.48184 1.07588 1.06144 1.72435 1.21972 0.96966 0.83905 0.99476 1.21926 0.97127 0.99820 0.98309 1.21613 0.93233 0.96560 1.03923 1.21904 0.89298 0.95750 0.96779 0.94095 1.62171 1.03989 1.15881 1.41690 1.22502 1.01204 0.89696 0.99758 1.21912 0.98867 0.96000 0.85982 0.90180 1.22494 1.00503 1.01471 0.99946 1.21750 0.90786 1.00568 1.01017 1.18995 0.95218 0.93799 0.92654 1.21381 0.93379 1.30623 1.10289 0.93109 1.24989 0.97388 0.96119 0.95887 1.69989 1.34243 1.34603 1.14512 0.86640 0.86337 0.77798 0.77818 1.19901 1.21136 1.21180 1.21736 0.78608 1.01287 0.99183 0.89802 0.88892 0.88855 0.89201 0.90778 0.91817 0.90300 0.90284 0.91124 0.91789 0.90057 0.96099 0.92366 0.93516 0.92623 0.93344 0.93200 0.95004 0.97290 0.93317 0.89055 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 10.11 36.00 0.36 -0.93 16 2 C 0.51 6.22 7.80 -10.99 -0.09 6.13 16 3 O -0.55 -9.17 16.53 5.55 0.09 -9.08 16 4 N -0.61 -6.98 2.97 -172.79 -0.51 -7.50 16 5 C 0.10 0.82 6.36 -3.71 -0.02 0.80 16 6 C -0.13 -1.17 6.08 -26.62 -0.16 -1.33 16 7 C -0.12 -1.42 5.10 -26.69 -0.14 -1.56 16 8 C 0.07 0.99 1.93 -67.60 -0.13 0.86 16 9 H 0.04 0.58 6.21 -51.93 -0.32 0.26 16 10 N -0.51 -8.38 4.06 -226.77 -0.92 -9.31 16 11 C 0.02 0.26 8.16 60.06 0.49 0.75 16 12 C 0.08 1.35 2.17 -67.71 -0.15 1.20 16 13 H 0.08 1.37 6.12 -51.93 -0.32 1.05 16 14 C -0.19 -2.63 8.44 37.15 0.31 -2.32 16 15 C -0.10 -2.12 4.48 -26.73 -0.12 -2.24 16 16 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 C 0.11 1.56 4.96 -3.73 -0.02 1.54 16 26 H 0.08 0.40 5.11 -51.93 -0.27 0.14 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.09 0.49 5.04 -51.93 -0.26 0.23 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.91 6.32 -51.93 -0.33 0.59 16 35 H 0.06 0.96 6.32 -51.93 -0.33 0.63 16 36 H 0.08 1.39 6.07 -51.93 -0.32 1.08 16 37 H 0.02 0.30 6.60 -51.93 -0.34 -0.04 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.62 6.27 -51.93 -0.33 0.29 16 40 H 0.05 0.79 6.74 -51.93 -0.35 0.44 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 1.02 6.14 -51.93 -0.32 0.70 16 43 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.09 1.39 5.58 -51.93 -0.29 1.10 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -33.17 350.48 -8.48 -41.66 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.94 Total: -1.55 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.20 Total: -10.06 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.70 Total: -43.21 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.17 -8.48 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.816 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds