Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99966 * 2 1 4 4 N 1.34773 * 120.00119 * 180.02562 * 2 1 3 5 5 C 1.46927 * 120.62940 * 355.02699 * 4 2 1 6 6 C 1.53193 * 108.77550 * 126.41524 * 5 4 2 7 7 C 1.53047 * 109.31573 * 54.63222 * 6 5 4 8 8 C 1.53045 * 109.53534 * 298.63688 * 7 6 5 9 9 H 1.08994 * 109.49590 * 301.37895 * 8 7 6 10 10 N 1.46895 * 109.49223 * 181.31477 * 8 7 6 11 11 C 1.46902 * 111.00535 * 295.05823 * 10 8 7 12 12 C 1.46906 * 110.99865 * 171.10774 * 10 8 7 13 13 H 1.08995 * 109.47197 * 91.47331 * 12 10 8 14 14 C 1.53001 * 109.46846 * 331.47820 * 12 10 8 15 15 C 1.53000 * 109.47110 * 211.48116 * 12 10 8 16 16 C 1.52997 * 109.47048 * 299.66750 * 15 12 10 17 17 C 1.50694 * 109.47251 * 186.14439 * 16 15 12 18 18 H 1.08005 * 120.00520 * 0.02562 * 17 16 15 19 19 C 1.37884 * 120.00402 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99471 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47069 * 89.99937 * 21 19 17 23 23 H 1.48499 * 109.47192 * 209.99862 * 21 19 17 24 24 H 1.48504 * 109.47284 * 330.00021 * 21 19 17 25 25 C 1.46932 * 120.63239 * 175.04654 * 4 2 1 26 26 H 1.08997 * 109.46758 * 185.21948 * 1 2 3 27 27 H 1.08994 * 109.47116 * 305.21938 * 1 2 3 28 28 H 1.09000 * 109.46976 * 65.22177 * 1 2 3 29 29 H 1.08990 * 109.59054 * 6.62644 * 5 4 2 30 30 H 1.09006 * 109.70453 * 246.26746 * 5 4 2 31 31 H 1.09006 * 109.49839 * 294.68080 * 6 5 4 32 32 H 1.08995 * 109.52694 * 174.60352 * 6 5 4 33 33 H 1.08999 * 109.45856 * 178.61785 * 7 6 5 34 34 H 1.08997 * 109.44370 * 58.64835 * 7 6 5 35 35 H 1.09003 * 109.46558 * 55.05869 * 11 10 8 36 36 H 1.09001 * 109.46575 * 295.06571 * 11 10 8 37 37 H 1.08996 * 109.47597 * 175.06697 * 11 10 8 38 38 H 1.09000 * 109.47069 * 185.33080 * 14 12 10 39 39 H 1.09004 * 109.47083 * 305.32713 * 14 12 10 40 40 H 1.09002 * 109.47364 * 65.32512 * 14 12 10 41 41 H 1.09003 * 109.47052 * 59.66824 * 15 12 10 42 42 H 1.09005 * 109.47130 * 179.66855 * 15 12 10 43 43 H 1.09000 * 109.47327 * 306.14661 * 16 15 12 44 44 H 1.08997 * 109.47227 * 66.14515 * 16 15 12 45 45 H 0.96998 * 119.99999 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58170 * 113.79734 * 25 4 2 47 47 H 1.09002 * 109.58167 * 353.37542 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4645 -2.4453 0.1085 6 6 1.8853 -3.3473 -1.0560 7 6 3.4099 -3.4804 -1.0678 8 6 4.0424 -2.1017 -1.2717 9 1 3.6884 -1.6743 -2.2098 10 7 5.5047 -2.2348 -1.3144 11 6 6.0294 -2.6972 -0.0226 12 6 6.1367 -0.9713 -1.7174 13 1 6.3717 -0.3834 -0.8302 14 6 5.1771 -0.1836 -2.6116 15 6 7.4245 -1.2683 -2.4883 16 6 8.3873 -2.0489 -1.5914 17 6 9.7100 -2.2106 -2.2951 18 1 9.8502 -1.7975 -3.2831 19 6 10.7418 -2.8850 -1.6772 20 7 10.5714 -3.3876 -0.4739 21 14 12.3816 -3.0847 -2.5492 22 1 13.2628 -1.9369 -2.2155 23 1 13.0260 -4.3479 -2.1084 24 1 12.1598 -3.1281 -4.0169 25 6 3.6461 -1.1857 -0.1097 26 1 -0.3633 -1.0234 0.0935 27 1 -0.3633 0.5926 0.8395 28 1 -0.3633 0.4307 -0.9331 29 1 0.3902 -2.2670 0.0628 30 1 1.7150 -2.9276 1.0534 31 1 1.5512 -2.9078 -1.9959 32 1 1.4351 -4.3325 -0.9348 33 1 3.7104 -4.1416 -1.8806 34 1 3.7452 -3.8969 -0.1180 35 1 5.5320 -3.6249 0.2604 36 1 5.8431 -1.9386 0.7377 37 1 7.1020 -2.8710 -0.1072 38 1 5.6796 0.7077 -2.9873 39 1 4.8678 -0.8071 -3.4505 40 1 4.3003 0.1096 -2.0342 41 1 7.1901 -1.8612 -3.3725 42 1 7.8903 -0.3309 -2.7924 43 1 8.5361 -1.5055 -0.6584 44 1 7.9677 -3.0317 -1.3764 45 1 11.2970 -3.8623 -0.0393 46 1 4.0767 -1.5641 0.8174 47 1 4.0110 -0.1762 -0.2993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = -24.168906 kcal Electronic energy + Delta-G solvation = -23768.304805 eV Core-core repulsion = 20565.422648 eV Total energy + Delta-G solvation = -3202.882158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58467 -38.71069 -36.60441 -33.73750 -32.68903 -31.70179 -30.73477 -29.78108 -28.56184 -25.43262 -25.02444 -24.84473 -22.94576 -21.53557 -20.14755 -19.24219 -18.82309 -17.38159 -16.47488 -16.00516 -15.66269 -15.54448 -14.81029 -14.61281 -14.42718 -14.17479 -13.89827 -13.61080 -13.20814 -12.87034 -12.64170 -12.50763 -12.46287 -12.24916 -12.03509 -11.69682 -11.55678 -11.41657 -11.19666 -11.03738 -10.94775 -10.78965 -10.65186 -10.51310 -10.32877 -10.13786 -9.91134 -9.57334 -9.09791 -8.93319 -8.78904 -8.24663 -7.68231 -5.93220 -3.93546 2.48056 2.84401 3.35970 3.42095 3.45959 4.19821 4.38326 4.52063 4.53610 4.73186 4.79184 4.92885 5.02304 5.13300 5.15619 5.28810 5.37857 5.42672 5.48366 5.50444 5.57222 5.63882 5.67201 5.75916 5.82294 5.89211 5.98711 6.04798 6.18311 6.21923 6.27055 6.30358 6.44942 6.50034 6.67807 6.75503 6.97902 7.25556 7.28293 7.56799 7.61897 7.77207 7.99729 8.03379 8.08927 8.54375 9.13308 9.69474 11.17975 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031831 B = 0.003656 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.438521 B = 7657.103283 C = 8009.327386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.608 5.608 5 C 0.100 3.900 6 C -0.133 4.133 7 C -0.114 4.114 8 C 0.065 3.935 9 H 0.090 0.910 10 N -0.514 5.514 11 C -0.003 4.003 12 C 0.079 3.921 13 H 0.042 0.958 14 C -0.158 4.158 15 C -0.098 4.098 16 C 0.019 3.981 17 C -0.517 4.517 18 H 0.052 0.948 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.074 3.926 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.009 0.991 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.600 0.531 1.439 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.297 3.703 3 O -0.427 6.427 4 N -0.342 5.342 5 C -0.023 4.023 6 C -0.172 4.172 7 C -0.152 4.152 8 C -0.045 4.045 9 H 0.108 0.892 10 N -0.237 5.237 11 C -0.150 4.150 12 C -0.029 4.029 13 H 0.060 0.940 14 C -0.216 4.216 15 C -0.136 4.136 16 C -0.017 4.017 17 C -0.555 4.555 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.050 4.050 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.130 0.870 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.047 0.644 1.212 22.089 hybrid contribution 0.786 0.361 0.299 0.915 sum -21.260 1.005 1.512 21.338 Atomic orbital electron populations 1.22036 0.92130 1.04455 1.05214 1.20808 0.90561 0.83203 0.75701 1.90726 1.70626 1.31086 1.50228 1.48175 1.07449 1.06030 1.72561 1.21944 0.97098 0.84037 0.99221 1.21922 0.97083 0.99678 0.98518 1.21603 0.93381 0.97103 1.03070 1.22245 0.89608 0.94834 0.97792 0.89158 1.62307 1.01731 1.29831 1.29801 1.23060 1.04961 0.98519 0.88503 1.21859 0.95485 0.88226 0.97327 0.94020 1.22218 0.99231 0.99998 1.00121 1.21636 0.93015 0.99901 0.99011 1.19300 0.92649 0.95667 0.94132 1.21341 0.97438 1.34449 1.02288 0.92956 1.24994 0.98667 0.95815 0.94959 1.69948 1.32458 1.37598 1.13683 0.86648 0.84287 0.77381 0.79987 1.20834 1.21331 1.19960 1.22639 0.79215 1.02847 1.00300 0.89877 0.88945 0.88779 0.89159 0.91229 0.91431 0.90457 0.90493 0.91587 0.92195 0.96357 0.86989 0.92358 0.92176 0.92819 0.92845 0.93342 0.97282 0.94704 0.93184 0.91207 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 10.12 36.01 0.36 -0.91 16 2 C 0.51 6.18 7.80 -10.99 -0.09 6.10 16 3 O -0.55 -9.25 16.53 5.56 0.09 -9.16 16 4 N -0.61 -6.80 2.97 -172.77 -0.51 -7.31 16 5 C 0.10 0.75 6.36 -3.71 -0.02 0.73 16 6 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 7 C -0.11 -1.26 5.04 -26.68 -0.13 -1.39 16 8 C 0.06 0.87 1.84 -67.60 -0.12 0.75 16 9 H 0.09 1.25 5.62 -51.93 -0.29 0.96 16 10 N -0.51 -8.53 4.43 -226.76 -1.00 -9.54 16 11 C 0.00 -0.06 8.09 60.07 0.49 0.43 16 12 C 0.08 1.40 1.99 -67.71 -0.13 1.27 16 13 H 0.04 0.79 7.74 -51.93 -0.40 0.39 16 14 C -0.16 -2.43 7.73 37.16 0.29 -2.14 16 15 C -0.10 -2.07 4.87 -26.73 -0.13 -2.20 16 16 C 0.02 0.49 3.38 -27.89 -0.09 0.40 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 25 C 0.07 1.00 4.73 -3.71 -0.02 0.98 16 26 H 0.08 0.38 5.10 -51.93 -0.26 0.11 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.44 5.04 -51.93 -0.26 0.18 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.74 6.48 -51.93 -0.34 0.41 16 35 H 0.06 0.91 6.24 -51.93 -0.32 0.59 16 36 H 0.02 0.30 6.30 -51.93 -0.33 -0.03 16 37 H 0.11 2.36 4.29 -51.93 -0.22 2.14 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 40 H 0.05 0.81 5.06 -51.93 -0.26 0.55 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.01 0.24 7.92 -51.93 -0.41 -0.17 16 44 H 0.03 0.94 5.86 -51.93 -0.30 0.63 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 0.97 6.16 -51.93 -0.32 0.65 16 47 H 0.09 1.51 5.02 -51.93 -0.26 1.25 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -32.68 344.37 -8.43 -41.11 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.73 Total: -0.31 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.18 Total: -10.81 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.78 Total: -42.97 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.68 -8.43 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.938 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds