Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00383 * 2 1 4 4 N 1.34774 * 119.99711 * 179.97438 * 2 1 3 5 5 C 1.46931 * 120.63252 * 0.02562 * 4 2 1 6 6 C 1.53187 * 108.77565 * 233.60560 * 5 4 2 7 7 C 1.53036 * 109.31414 * 305.36416 * 6 5 4 8 8 C 1.53035 * 109.54049 * 61.36541 * 7 6 5 9 9 H 1.09003 * 109.49565 * 58.61483 * 8 7 6 10 10 N 1.46901 * 109.49905 * 178.68175 * 8 7 6 11 11 C 1.46896 * 110.99801 * 309.46024 * 10 8 7 12 12 C 1.46905 * 110.99671 * 185.50571 * 10 8 7 13 13 H 1.08997 * 109.47093 * 327.03650 * 12 10 8 14 14 C 1.53005 * 109.46675 * 207.03377 * 12 10 8 15 15 C 1.52995 * 109.46779 * 87.03986 * 12 10 8 16 16 C 1.53002 * 109.47222 * 297.16544 * 15 12 10 17 17 C 1.50693 * 109.47558 * 186.37825 * 16 15 12 18 18 H 1.08001 * 120.00051 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00292 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00109 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00084 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47080 * 89.99627 * 21 19 17 23 23 H 1.48504 * 109.46824 * 209.99763 * 21 19 17 24 24 H 1.48498 * 109.46445 * 329.99629 * 21 19 17 25 25 C 1.46933 * 120.60637 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47604 * 270.01037 * 1 2 3 27 27 H 1.09010 * 109.46573 * 30.00169 * 1 2 3 28 28 H 1.08990 * 109.47596 * 150.00126 * 1 2 3 29 29 H 1.09004 * 109.58863 * 113.81581 * 5 4 2 30 30 H 1.09001 * 109.70102 * 353.46682 * 5 4 2 31 31 H 1.09007 * 109.49436 * 185.40949 * 6 5 4 32 32 H 1.09004 * 109.49601 * 65.32110 * 6 5 4 33 33 H 1.08997 * 109.45953 * 301.34180 * 7 6 5 34 34 H 1.09000 * 109.44805 * 181.37970 * 7 6 5 35 35 H 1.08995 * 109.47416 * 301.69661 * 11 10 8 36 36 H 1.08995 * 109.47132 * 61.70179 * 11 10 8 37 37 H 1.09000 * 109.46513 * 181.69780 * 11 10 8 38 38 H 1.09001 * 109.46444 * 174.99570 * 14 12 10 39 39 H 1.08999 * 109.47261 * 294.99285 * 14 12 10 40 40 H 1.09003 * 109.47062 * 54.99902 * 14 12 10 41 41 H 1.08997 * 109.47791 * 57.17278 * 15 12 10 42 42 H 1.09007 * 109.46871 * 177.17607 * 15 12 10 43 43 H 1.09002 * 109.47299 * 306.38209 * 16 15 12 44 44 H 1.09004 * 109.46749 * 66.37851 * 16 15 12 45 45 H 0.97006 * 119.99954 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.61422 * 6.62471 * 25 4 2 47 47 H 1.08999 * 109.56223 * 246.19623 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4601 -2.4477 0.0005 6 6 1.9678 -3.2991 1.1684 7 6 3.4892 -3.4342 1.0725 8 6 4.1331 -2.0492 1.1689 9 1 3.8491 -1.5808 2.1113 10 7 5.5948 -2.1828 1.1085 11 6 6.0720 -3.1853 2.0703 12 6 6.2513 -0.8872 1.3290 13 1 5.6290 -0.0905 0.9213 14 6 7.6123 -0.8797 0.6300 15 6 6.4474 -0.6638 2.8298 16 6 5.0827 -0.6009 3.5187 17 6 5.2677 -0.2260 4.9665 18 1 6.2593 -0.0498 5.3563 19 6 4.1708 -0.1070 5.7933 20 7 4.3323 0.2197 7.0570 21 14 2.4554 -0.4111 5.1191 22 1 2.1084 -1.8462 5.2779 23 1 1.4762 0.4205 5.8641 24 1 2.4183 -0.0491 3.6794 25 6 3.6500 -1.1828 0.0011 26 1 -0.3634 0.0002 1.0276 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8899 -0.5137 29 1 1.6427 -2.9697 -0.9388 30 1 0.3914 -2.2678 0.1168 31 1 1.5112 -4.2879 1.1231 32 1 1.7038 -2.8188 2.1106 33 1 3.7537 -3.8921 0.1194 34 1 3.8501 -4.0600 1.8887 35 1 5.7639 -2.8995 3.0760 36 1 5.6466 -4.1577 1.8226 37 1 7.1595 -3.2424 2.0259 38 1 8.0604 0.1100 0.7180 39 1 8.2650 -1.6169 1.0977 40 1 7.4811 -1.1269 -0.4235 41 1 7.0275 -1.4870 3.2469 42 1 6.9793 0.2739 2.9911 43 1 4.4612 0.1470 3.0263 44 1 4.5982 -1.5752 3.4547 45 1 3.5606 0.3031 7.6389 46 1 4.0267 -0.1669 0.1195 47 1 4.0109 -1.6014 -0.9384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172510294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = -27.643921 kcal Electronic energy + Delta-G solvation = -24677.549418 eV Core-core repulsion = 21474.516573 eV Total energy + Delta-G solvation = -3203.032845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34596 -38.77642 -36.63822 -33.45309 -32.74459 -31.53308 -30.69758 -29.99127 -28.65561 -26.11364 -25.19634 -24.30233 -22.87111 -21.31893 -19.91435 -19.26414 -18.96380 -17.22522 -16.74036 -15.96207 -15.76265 -15.40848 -14.70919 -14.63016 -14.16652 -13.97249 -13.68299 -13.32026 -13.25531 -13.07844 -12.75517 -12.61706 -12.38482 -12.09801 -12.06658 -11.88893 -11.68445 -11.50502 -11.35650 -11.24577 -11.02286 -10.85084 -10.72114 -10.33103 -10.21486 -9.92937 -9.72400 -9.68916 -9.56163 -9.20232 -8.60408 -8.55384 -7.70001 -6.06614 -4.03701 2.68970 3.01760 3.23415 3.32885 3.38769 4.23087 4.42010 4.53628 4.77600 4.85741 4.92154 5.10725 5.15898 5.24062 5.26643 5.32943 5.39388 5.48139 5.55233 5.62483 5.70760 5.75464 5.79014 5.82285 5.87771 6.02334 6.04594 6.07837 6.11259 6.17690 6.27458 6.35068 6.40427 6.42027 6.48380 6.57669 6.67988 6.88802 7.25806 7.35075 7.43301 7.46721 7.54399 7.78947 8.24093 8.52880 8.99071 9.56437 11.07061 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.008364 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.207045 B = 3346.767385 C = 4475.149975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.510 3.490 3 O -0.543 6.543 4 N -0.612 5.612 5 C 0.106 3.894 6 C -0.138 4.138 7 C -0.115 4.115 8 C 0.044 3.956 9 H 0.081 0.919 10 N -0.525 5.525 11 C 0.012 3.988 12 C 0.067 3.933 13 H 0.075 0.925 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.017 4.017 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.903 5.903 21 Si 0.871 3.129 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.122 3.878 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.017 0.983 45 H 0.262 0.738 46 H 0.092 0.908 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -8.944 -16.534 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.420 6.420 4 N -0.346 5.346 5 C -0.017 4.017 6 C -0.177 4.177 7 C -0.153 4.153 8 C -0.065 4.065 9 H 0.099 0.901 10 N -0.249 5.249 11 C -0.136 4.136 12 C -0.042 4.042 13 H 0.093 0.907 14 C -0.191 4.191 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.556 4.556 18 H 0.089 0.911 19 C -0.133 4.133 20 N -0.542 5.542 21 Si 0.698 3.302 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.001 4.001 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.110 0.890 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.358 -8.493 -16.850 19.616 hybrid contribution -1.180 0.039 0.801 1.426 sum -6.538 -8.454 -16.049 19.282 Atomic orbital electron populations 1.21971 0.92120 1.04563 1.04841 1.20780 0.90576 0.83167 0.75600 1.90726 1.70606 1.30986 1.49686 1.48118 1.07133 1.05927 1.73467 1.21813 0.96751 0.84205 0.98952 1.21961 0.96734 1.00082 0.98935 1.21654 0.93996 0.96931 1.02674 1.22431 0.88497 0.95996 0.99601 0.90150 1.62288 1.03871 1.08215 1.50531 1.22557 1.00357 0.94932 0.95720 1.21951 0.95470 0.90688 0.96050 0.90663 1.21728 0.96213 1.00985 1.00172 1.22150 1.00153 1.01597 0.93219 1.19835 0.93065 0.95866 0.96590 1.21167 0.95137 1.46685 0.92566 0.91086 1.25006 0.98885 0.94701 0.94700 1.69913 1.30518 1.48841 1.04927 0.86890 0.85071 0.78258 0.79954 1.20318 1.21300 1.18802 1.21595 0.78369 1.01893 0.98231 0.88866 0.88982 0.89993 0.91180 0.89539 0.90398 0.91388 0.91256 0.91109 0.93000 0.92103 0.91782 0.92747 0.93077 0.92689 0.92160 0.92273 0.96819 0.96483 0.92788 0.88958 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.46 36.00 0.34 -1.49 16 2 C 0.51 7.93 7.81 -10.99 -0.09 7.85 16 3 O -0.54 -10.98 16.51 5.55 0.09 -10.89 16 4 N -0.61 -8.60 2.97 -172.74 -0.51 -9.11 16 5 C 0.11 1.06 6.21 -3.71 -0.02 1.03 16 6 C -0.14 -1.55 6.08 -26.62 -0.16 -1.71 16 7 C -0.11 -1.46 4.65 -26.69 -0.12 -1.59 16 8 C 0.04 0.69 1.74 -67.58 -0.12 0.57 16 9 H 0.08 1.60 4.18 -51.93 -0.22 1.39 16 10 N -0.52 -8.16 4.47 -226.75 -1.01 -9.18 16 11 C 0.01 0.19 7.42 60.06 0.45 0.63 16 12 C 0.07 1.12 2.40 -67.71 -0.16 0.96 16 13 H 0.08 1.36 5.88 -51.93 -0.31 1.05 16 14 C -0.13 -1.88 9.35 37.16 0.35 -1.53 16 15 C -0.13 -2.68 4.10 -26.73 -0.11 -2.79 16 16 C -0.02 -0.41 2.19 -27.89 -0.06 -0.47 16 17 C -0.52 -15.06 9.66 -34.45 -0.33 -15.39 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -28.39 13.96 55.43 0.77 -27.61 16 21 Si 0.87 22.22 27.47 -169.99 -4.67 17.55 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 25 C 0.12 1.87 5.57 -3.69 -0.02 1.85 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.08 0.59 6.19 -51.93 -0.32 0.27 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.67 5.53 -51.93 -0.29 0.38 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.92 6.27 -51.93 -0.33 0.60 16 35 H 0.05 0.93 4.99 -51.93 -0.26 0.67 16 36 H 0.06 0.80 6.28 -51.93 -0.33 0.47 16 37 H 0.06 0.91 7.08 -51.93 -0.37 0.54 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.19 6.24 -51.93 -0.32 0.87 16 42 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 43 H 0.01 0.35 6.98 -51.93 -0.36 -0.01 16 44 H 0.02 0.41 3.75 -51.93 -0.19 0.22 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.09 1.67 5.30 -51.93 -0.28 1.40 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -34.09 342.00 -8.10 -42.19 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.76 Total: 2.02 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.16 Total: -10.13 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.75 Total: -45.90 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.09 -8.10 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172510294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.550 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds