Wall clock time and date at job start Tue Mar 31 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 120.00028 * 2 1 4 4 N 1.34780 * 119.99908 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99961 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46987 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.47474 * 304.99849 * 6 5 4 8 8 C 1.52998 * 109.47119 * 65.00085 * 6 5 4 9 9 C 1.52998 * 109.47243 * 184.99928 * 6 5 4 10 10 N 1.46896 * 109.47272 * 174.99834 * 9 6 5 11 11 C 1.46904 * 110.99805 * 180.02562 * 10 9 6 12 12 C 1.53000 * 109.46884 * 274.99967 * 11 10 9 13 13 C 1.53001 * 109.47372 * 299.99997 * 12 11 10 14 14 C 1.52998 * 109.47047 * 300.00227 * 13 12 11 15 15 C 1.50704 * 109.47136 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99931 * 245.44865 * 15 14 13 17 17 C 1.37882 * 120.00026 * 65.44151 * 15 14 13 18 18 N 1.31507 * 119.99945 * 9.57809 * 17 15 14 19 19 Si 1.86794 * 119.99867 * 189.57583 * 17 15 14 20 20 H 1.48505 * 109.47308 * 94.99488 * 19 17 15 21 21 H 1.48504 * 109.47226 * 214.98977 * 19 17 15 22 22 H 1.48502 * 109.47350 * 334.99437 * 19 17 15 23 23 C 1.53000 * 109.47189 * 60.00240 * 14 13 12 24 24 C 1.53000 * 109.46794 * 299.99293 * 23 14 13 25 25 H 1.09003 * 109.46683 * 269.99889 * 1 2 3 26 26 H 1.08994 * 109.47122 * 29.99526 * 1 2 3 27 27 H 1.08995 * 109.47440 * 150.00301 * 1 2 3 28 28 H 0.97003 * 119.99903 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.46868 * 60.00068 * 5 4 2 30 30 H 1.08994 * 109.47075 * 299.99923 * 5 4 2 31 31 H 1.09004 * 109.46962 * 180.02562 * 8 6 5 32 32 H 1.09000 * 109.47101 * 299.99521 * 8 6 5 33 33 H 1.08995 * 109.47254 * 59.99972 * 8 6 5 34 34 H 1.09001 * 109.47145 * 295.00008 * 9 6 5 35 35 H 1.09003 * 109.47153 * 54.99834 * 9 6 5 36 36 H 1.00902 * 111.00376 * 303.95459 * 10 9 6 37 37 H 1.08993 * 109.47348 * 35.00256 * 11 10 9 38 38 H 1.09001 * 109.47584 * 60.00493 * 12 11 10 39 39 H 1.09007 * 109.47306 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.47418 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.46766 * 60.00084 * 13 12 11 42 42 H 1.08998 * 109.47221 * 299.99579 * 14 13 12 43 43 H 0.97002 * 120.00256 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47186 * 180.02562 * 23 14 13 45 45 H 1.08998 * 109.47579 * 59.99558 * 23 14 13 46 46 H 1.09000 * 109.47712 * 300.00182 * 24 23 14 47 47 H 1.09000 * 109.47283 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1558 -2.6098 -0.0010 7 1 3.7216 -3.1487 0.8411 8 6 3.7506 -3.2941 -1.3080 9 6 5.6807 -2.6117 0.1241 10 7 6.1604 -3.9948 0.2447 11 6 7.6237 -4.0356 0.3677 12 6 8.2536 -4.0081 -1.0264 13 6 7.7750 -5.2213 -1.8264 14 6 8.1905 -6.5046 -1.1042 15 6 7.7185 -7.6996 -1.8919 16 1 6.9711 -8.3593 -1.4764 17 6 8.2408 -7.9506 -3.1430 18 7 9.2782 -7.2657 -3.5720 19 14 7.4749 -9.2637 -4.2285 20 1 6.4972 -8.6342 -5.1521 21 1 8.5384 -9.9364 -5.0171 22 1 6.7801 -10.2646 -3.3795 23 6 7.5605 -6.5321 0.2898 24 6 8.0392 -5.3190 1.0898 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6958 -2.0073 -0.0005 29 1 4.0095 -0.6536 0.8889 30 1 4.0088 -0.6533 -0.8911 31 1 4.1135 -4.3219 -1.3077 32 1 2.6642 -3.2928 -1.3971 33 1 4.1848 -2.7553 -2.1501 34 1 6.1185 -2.1511 -0.7615 35 1 5.9733 -2.0471 1.0095 36 1 5.7194 -4.4642 1.0214 37 1 7.9647 -3.1714 0.9376 38 1 7.9576 -3.0939 -1.5409 39 1 9.3394 -4.0388 -0.9352 40 1 8.2240 -5.2020 -2.8194 41 1 6.6892 -5.1910 -1.9176 42 1 9.2762 -6.5349 -1.0131 43 1 9.6459 -7.4425 -4.4521 44 1 7.8569 -7.4462 0.8044 45 1 6.4748 -6.5018 0.1986 46 1 9.1250 -5.3493 1.1811 47 1 7.5908 -5.3388 2.0831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:43 Heat of formation + Delta-G solvation = -72.300919 kcal Electronic energy + Delta-G solvation = -22841.789108 eV Core-core repulsion = 19636.819790 eV Total energy + Delta-G solvation = -3204.969318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84757 -38.51697 -36.71392 -34.39593 -32.92878 -31.48280 -30.02620 -29.71515 -28.44812 -26.48615 -24.75613 -23.86319 -21.57833 -20.89736 -20.49854 -20.19713 -18.15147 -17.02380 -16.39994 -16.22090 -15.86007 -15.27372 -14.95714 -14.58999 -14.29846 -14.23127 -13.63110 -13.48594 -12.93337 -12.90019 -12.65012 -12.60097 -12.30528 -12.08744 -12.03391 -11.47110 -11.35406 -11.26989 -11.10121 -10.94294 -10.79968 -10.68522 -10.54923 -10.17623 -10.11457 -10.03192 -9.75355 -9.28958 -9.23691 -8.71759 -8.54522 -8.17706 -7.93605 -5.90818 -3.90629 2.41773 3.00628 3.35855 3.43172 3.45830 4.34243 4.52899 4.55429 4.76392 4.84539 4.93226 5.04419 5.06481 5.37833 5.41177 5.43085 5.46274 5.50554 5.59548 5.68437 5.73521 5.82361 5.88972 5.99005 6.12427 6.20213 6.28781 6.34946 6.42435 6.50304 6.53411 6.56860 6.81481 6.87179 7.04667 7.26593 7.28105 7.42110 7.54865 7.65739 7.73246 7.89227 7.99295 8.19207 8.20772 8.61014 9.13894 9.71516 11.18230 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.003394 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.894891 B = 8248.429419 C = 9015.769445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.551 6.551 4 N -0.727 5.727 5 C 0.122 3.878 6 C -0.098 4.098 7 H 0.073 0.927 8 C -0.140 4.140 9 C 0.068 3.932 10 N -0.667 5.667 11 C 0.096 3.904 12 C -0.106 4.106 13 C -0.090 4.090 14 C 0.050 3.950 15 C -0.508 4.508 16 H 0.051 0.949 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.275 1.275 23 C -0.101 4.101 24 C -0.119 4.119 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.402 0.598 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.023 0.977 36 H 0.334 0.666 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.024 0.976 43 H 0.257 0.743 44 H 0.039 0.961 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 10.632 8.824 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.294 3.706 3 O -0.429 6.429 4 N -0.380 5.380 5 C -0.002 4.002 6 C -0.117 4.117 7 H 0.091 0.909 8 C -0.197 4.197 9 C -0.062 4.062 10 N -0.299 5.299 11 C -0.014 4.014 12 C -0.144 4.144 13 C -0.128 4.128 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.070 0.930 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.710 3.290 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.138 4.138 24 C -0.156 4.156 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.236 0.764 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.152 0.848 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.067 11.292 7.988 19.028 hybrid contribution -0.442 -0.776 0.213 0.918 sum -13.509 10.515 8.201 18.982 Atomic orbital electron populations 1.21882 0.91793 1.04895 1.04690 1.20820 0.90620 0.83524 0.75640 1.90728 1.70900 1.31506 1.49760 1.46126 1.07726 1.08742 1.75376 1.21412 0.79324 0.97198 1.02299 1.21346 0.96277 0.94177 0.99922 0.90867 1.21755 0.99439 1.02710 0.95799 1.21900 0.93109 0.90757 1.00479 1.60414 1.06221 1.14060 1.49200 1.21487 0.86742 0.96005 0.97118 1.21595 0.98498 0.99668 0.94611 1.21350 0.99735 0.92726 0.98965 1.18616 0.95691 0.93105 0.89431 1.21205 1.22387 1.09932 1.01134 0.93033 1.24939 0.94596 0.96116 0.98181 1.69973 1.22017 1.41945 1.18931 0.86748 0.79122 0.82118 0.80988 1.20848 1.21536 1.20036 1.21523 1.00360 0.93966 0.97973 1.21754 1.00702 0.96099 0.97092 0.88941 0.88944 0.90149 0.76360 0.91759 0.91271 0.90209 0.93919 0.92710 0.90716 0.95863 0.84760 0.95682 0.94325 0.93140 0.92101 0.93051 0.95798 0.93300 0.94227 0.92603 0.92148 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.30 36.00 0.37 -0.63 16 2 C 0.51 5.16 7.94 -10.99 -0.09 5.07 16 3 O -0.55 -8.27 17.10 5.56 0.10 -8.17 16 4 N -0.73 -6.28 5.28 -60.30 -0.32 -6.60 16 5 C 0.12 1.23 5.07 -4.04 -0.02 1.21 16 6 C -0.10 -0.96 2.57 -90.62 -0.23 -1.20 16 7 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 8 C -0.14 -1.53 8.95 37.16 0.33 -1.20 16 9 C 0.07 0.80 4.87 -3.83 -0.02 0.78 16 10 N -0.67 -9.33 4.28 -106.72 -0.46 -9.79 16 11 C 0.10 1.51 2.82 -67.71 -0.19 1.32 16 12 C -0.11 -1.99 5.53 -26.73 -0.15 -2.13 16 13 C -0.09 -2.05 4.88 -26.73 -0.13 -2.18 16 14 C 0.05 1.22 1.97 -91.77 -0.18 1.04 16 15 C -0.51 -13.95 8.48 -34.44 -0.29 -14.24 16 16 H 0.05 1.41 7.77 -52.48 -0.41 1.00 16 17 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 18 N -0.89 -25.85 12.16 55.43 0.67 -25.18 16 19 Si 0.88 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.10 -2.02 4.98 -26.73 -0.13 -2.16 16 24 C -0.12 -1.96 5.30 -26.73 -0.14 -2.11 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.40 2.46 7.65 -40.82 -0.31 2.14 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.06 7.75 -51.93 -0.40 0.65 16 32 H 0.04 0.38 7.18 -51.93 -0.37 0.01 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.98 7.44 -51.93 -0.39 0.60 16 35 H 0.02 0.26 8.05 -51.93 -0.42 -0.15 16 36 H 0.33 4.31 8.19 -39.29 -0.32 3.99 16 37 H 0.03 0.37 7.80 -51.93 -0.40 -0.03 16 38 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 41 H 0.05 1.18 7.60 -51.93 -0.39 0.79 16 42 H 0.02 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.11 7.48 -51.93 -0.39 0.72 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -31.44 365.78 -9.24 -40.68 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.76 Total: 1.87 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.96 Total: -14.75 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.10 Total: -41.57 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.10 Total: -8.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.44 -9.24 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.623 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds