Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46512 * 109.46797 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99647 * 179.97438 * 8 7 6 10 10 H 1.07995 * 119.99958 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99349 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00679 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99352 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47371 * 60.00324 * 13 11 9 15 15 H 1.48502 * 109.46990 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47367 * 299.99969 * 13 11 9 17 17 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 18 18 C 1.34776 * 120.00219 * 275.00364 * 17 2 1 19 19 O 1.21274 * 120.00173 * 359.97438 * 18 17 2 20 20 C 1.50705 * 119.99786 * 180.02562 * 18 17 2 21 21 C 1.52998 * 112.84738 * 50.33471 * 20 18 17 22 22 C 1.53780 * 113.61283 * 279.13476 * 20 18 17 23 23 C 1.53953 * 87.01880 * 220.05075 * 22 20 18 24 24 C 1.53779 * 87.11312 * 25.36419 * 23 22 20 25 25 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 27 27 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 31 31 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 32 32 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 33 33 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 34 34 H 1.08992 * 109.47098 * 299.99158 * 7 6 5 35 35 H 1.09001 * 109.47583 * 60.00267 * 7 6 5 36 36 H 0.96992 * 119.99836 * 359.97438 * 8 7 6 37 37 H 0.97001 * 119.99976 * 179.97438 * 12 11 9 38 38 H 0.97006 * 119.99491 * 95.00433 * 17 2 1 39 39 H 1.08995 * 109.47644 * 69.66868 * 21 20 18 40 40 H 1.09008 * 109.46940 * 189.66625 * 21 20 18 41 41 H 1.08997 * 109.47485 * 309.66324 * 21 20 18 42 42 H 1.09000 * 113.61734 * 334.57019 * 22 20 18 43 43 H 1.09005 * 113.61012 * 105.47260 * 22 20 18 44 44 H 1.09006 * 113.53560 * 270.81517 * 23 22 20 45 45 H 1.08999 * 113.74559 * 139.94208 * 23 22 20 46 46 H 1.09003 * 113.61947 * 220.09154 * 24 23 22 47 47 H 1.09000 * 113.61674 * 89.18740 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3136 6 6 4.0748 -1.3339 -2.5631 7 6 5.5997 -1.2264 -2.6272 8 7 6.0881 -1.9171 -3.8234 9 6 7.4302 -1.9534 -4.0931 10 1 8.1286 -1.4733 -3.4237 11 6 7.8928 -2.6073 -5.2267 12 7 7.0415 -3.1920 -6.0428 13 14 9.7236 -2.6575 -5.5941 14 1 10.4345 -3.3297 -4.4771 15 1 9.9555 -3.4111 -6.8525 16 1 10.2364 -1.2720 -5.7447 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3572 19 8 1.8589 1.1586 2.4116 20 6 2.6499 -0.7285 3.5875 21 6 3.9415 -1.5092 3.3365 22 6 1.5675 -1.5451 4.3131 23 6 2.1866 -1.0443 5.6307 24 6 2.7040 0.1668 4.8367 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 3.8532 0.4371 -1.3573 31 1 3.9994 -1.0726 -0.4259 32 1 3.7865 -2.3842 -2.5199 33 1 3.6401 -0.8741 -3.4507 34 1 5.8884 -0.1763 -2.6703 35 1 6.0340 -1.6867 -1.7397 36 1 5.4608 -2.3486 -4.4243 37 1 7.3649 -3.6486 -6.8352 38 1 2.2490 -1.6317 1.1527 39 1 4.7624 -0.8109 3.1739 40 1 4.1622 -2.1342 4.2019 41 1 3.8201 -2.1388 2.4551 42 1 0.5552 -1.1797 4.1397 43 1 1.6610 -2.6212 4.1668 44 1 2.9796 -1.6880 6.0113 45 1 1.4500 -0.7853 6.3912 46 1 3.7138 0.4708 5.1126 47 1 2.0031 1.0011 4.8068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174714720.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = -39.170894 kcal Electronic energy + Delta-G solvation = -22252.057848 eV Core-core repulsion = 19048.525156 eV Total energy + Delta-G solvation = -3203.532693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85325 -38.41064 -36.71461 -35.22595 -33.25331 -31.72594 -30.43297 -29.42459 -27.43730 -26.01053 -25.24725 -24.15514 -22.35895 -21.41357 -20.76071 -20.60161 -18.87720 -17.39731 -16.99101 -16.54943 -15.57714 -15.13391 -14.96725 -14.75594 -14.62343 -13.93384 -13.83508 -13.47696 -13.15477 -13.01701 -12.94911 -12.90035 -12.68009 -12.54294 -12.31359 -11.75661 -11.63312 -11.52161 -11.36541 -11.24158 -10.98254 -10.82872 -10.78591 -10.69384 -10.61326 -10.42370 -10.29097 -9.99869 -9.68431 -9.64523 -9.17157 -8.84278 -6.89236 -5.74273 -3.02679 2.50214 3.04859 3.45440 3.49320 3.50748 4.11329 4.18615 4.38225 4.45891 4.52269 4.64378 4.76709 4.91860 5.00321 5.12648 5.23242 5.27155 5.32336 5.42546 5.45576 5.46342 5.49500 5.53663 5.56290 5.63345 5.70936 5.71511 5.72923 5.80412 5.90584 5.92631 5.97035 6.09600 6.12104 6.25902 6.32017 6.39829 6.44248 6.48152 6.90994 6.94986 7.39137 7.71473 8.12140 8.45242 9.55803 10.15169 10.49816 11.48839 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.002779 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.552268 B =10074.604663 C =10948.787952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.936 5.936 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.720 5.720 18 C 0.529 3.471 19 O -0.543 6.543 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.115 4.115 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.400 0.600 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 3.037 21.411 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.371 5.371 18 C 0.316 3.684 19 O -0.420 6.420 20 C -0.115 4.115 21 C -0.186 4.186 22 C -0.159 4.159 23 C -0.178 4.178 24 C -0.152 4.152 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.235 0.765 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.675 3.915 21.430 26.267 hybrid contribution 0.936 -0.690 -0.613 1.315 sum -13.738 3.225 20.817 25.149 Atomic orbital electron populations 1.22167 0.95504 1.01991 1.02380 1.21045 0.93678 0.97738 0.84065 0.89452 1.21934 0.96874 1.00891 0.96751 1.21513 0.93969 1.01079 0.98600 1.21729 0.97247 1.00255 0.97118 1.20645 0.91007 0.95304 0.90531 1.42387 1.05318 1.64974 1.25217 1.19213 0.83935 1.28450 1.05447 0.91287 1.24748 0.97728 1.00977 0.97693 1.69652 1.32868 1.40824 1.15094 0.86255 0.85117 0.77488 0.77270 1.21273 1.21661 1.21263 1.46142 1.67227 1.14125 1.09614 1.20389 0.76959 0.86940 0.84146 1.90671 1.50410 1.15993 1.84898 1.22176 0.97833 0.98550 0.92898 1.21610 0.94754 0.99751 1.02492 1.22944 0.97578 0.99689 0.95715 1.22859 1.00616 0.97992 0.96361 1.22869 1.02540 0.96933 0.92884 0.92537 0.92402 0.91573 0.90263 0.91398 0.92027 0.92146 0.92150 0.92061 0.96593 0.96655 0.78355 0.93487 0.76548 0.91472 0.91248 0.91736 0.89859 0.90571 0.89844 0.91101 0.90948 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.15 0.35 -1.13 16 2 C 0.14 1.41 2.57 -67.93 -0.17 1.23 16 3 H 0.09 1.06 7.58 -51.92 -0.39 0.67 16 4 C -0.13 -1.27 4.75 -26.73 -0.13 -1.39 16 5 C -0.11 -1.42 5.10 -26.73 -0.14 -1.55 16 6 C -0.13 -2.01 5.33 -26.73 -0.14 -2.15 16 7 C 0.15 3.16 6.26 -4.04 -0.03 3.14 16 8 N -0.73 -19.31 5.60 -59.90 -0.34 -19.65 16 9 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.82 13.06 55.49 0.72 -28.09 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 N -0.72 -6.85 4.42 -53.80 -0.24 -7.09 16 18 C 0.53 5.93 6.88 -10.98 -0.08 5.86 16 19 O -0.54 -8.12 15.57 5.56 0.09 -8.04 16 20 C -0.11 -0.94 1.25 -154.85 -0.19 -1.14 16 21 C -0.13 -0.95 8.98 37.16 0.33 -0.62 16 22 C -0.12 -0.84 7.21 -25.83 -0.19 -1.02 16 23 C -0.14 -0.90 7.74 -25.83 -0.20 -1.10 16 24 C -0.11 -0.97 6.99 -25.92 -0.18 -1.15 16 25 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.40 3.09 7.59 -40.82 -0.31 2.78 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.42 7.34 -51.92 -0.38 0.04 16 41 H 0.06 0.44 7.11 -51.93 -0.37 0.07 16 42 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 44 H 0.08 0.46 7.64 -51.93 -0.40 0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.09 0.93 7.45 -51.93 -0.39 0.55 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -33.18 375.83 -8.96 -42.13 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.83 Total: 5.98 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.00 Total: -8.65 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.15 Total: -54.83 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.18 -8.96 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174714720.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.963 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds