Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 C 1.50701 * 109.46711 * 239.99648 * 2 1 3 5 5 O 1.21279 * 119.99961 * 239.99476 * 4 2 1 6 6 N 1.34774 * 120.00038 * 60.00277 * 4 2 1 7 7 C 1.46504 * 120.00121 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.46832 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.47136 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47774 * 180.02562 * 9 8 7 11 11 C 1.52996 * 109.47670 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47295 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.46987 * 179.97438 * 12 11 10 14 14 C 1.36938 * 120.00010 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.38810 * 119.99850 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99855 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46920 * 59.99541 * 18 16 14 20 20 H 1.48494 * 109.47312 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46745 * 299.99824 * 18 16 14 22 22 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 23 23 C 1.53000 * 117.50223 * 299.99980 * 22 2 1 24 24 C 1.52997 * 117.49889 * 231.37242 * 22 2 1 25 25 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 27 27 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 28 28 H 0.97002 * 119.99722 * 359.97438 * 6 4 2 29 29 H 1.08995 * 109.47030 * 299.99785 * 7 6 4 30 30 H 1.09000 * 109.46883 * 60.00291 * 7 6 4 31 31 H 1.08997 * 109.47562 * 300.00022 * 8 7 6 32 32 H 1.09007 * 109.47478 * 60.00322 * 8 7 6 33 33 H 1.09007 * 109.46870 * 300.00181 * 9 8 7 34 34 H 1.09003 * 109.47199 * 59.99411 * 9 8 7 35 35 H 1.09005 * 109.46787 * 300.00513 * 10 9 8 36 36 H 1.09003 * 109.47261 * 59.99421 * 10 9 8 37 37 H 1.08997 * 109.46958 * 300.00355 * 11 10 9 38 38 H 1.09000 * 109.46790 * 60.00200 * 11 10 9 39 39 H 1.08993 * 109.46898 * 300.00352 * 12 11 10 40 40 H 1.09000 * 109.46865 * 60.00458 * 12 11 10 41 41 H 0.97002 * 120.00265 * 0.02562 * 13 12 11 42 42 H 0.96999 * 120.00028 * 180.02562 * 17 16 14 43 43 H 1.09002 * 115.55911 * 85.68670 * 22 2 1 44 44 H 1.08990 * 117.49990 * 145.01974 * 23 22 2 45 45 H 1.09004 * 117.49237 * 359.97438 * 23 22 2 46 46 H 1.08999 * 117.49685 * 0.02562 * 24 22 2 47 47 H 1.08999 * 117.52022 * 214.97106 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2501 -2.4546 7 6 2.1953 -0.9405 -3.6508 8 6 1.6847 -0.2196 -4.8999 9 6 2.1945 -0.9410 -6.1492 10 6 1.6845 -0.2199 -7.3985 11 6 2.1948 -0.9408 -8.6477 12 6 1.6842 -0.2200 -9.8969 13 7 2.1733 -0.9100 -11.0931 14 6 1.8426 -0.4421 -12.3368 15 1 1.2215 0.4358 -12.4359 16 6 2.3057 -1.0963 -13.4702 17 7 3.0631 -2.1659 -13.3494 18 14 1.8551 -0.4576 -15.1669 19 1 2.3585 0.9308 -15.3229 20 1 2.4705 -1.3261 -16.2022 21 1 0.3785 -0.4693 -15.3240 22 6 2.0400 -0.7212 1.2493 23 6 1.6357 -0.1495 2.6097 24 6 3.0742 0.0051 2.1116 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.1487 0.5384 -2.5435 29 1 3.2853 -0.9401 -3.6506 30 1 1.8323 -1.9682 -3.6509 31 1 0.5947 -0.2203 -4.8998 32 1 2.0473 0.8083 -4.9001 33 1 3.2846 -0.9406 -6.1496 34 1 1.8316 -1.9688 -6.1489 35 1 0.5944 -0.2198 -7.3983 36 1 2.0477 0.8078 -7.3986 37 1 3.2848 -0.9405 -8.6476 38 1 1.8317 -1.9686 -8.6478 39 1 0.5942 -0.2207 -9.8968 40 1 2.0469 0.8079 -9.8971 41 1 2.7315 -1.6983 -11.0041 42 1 3.3870 -2.6227 -14.1414 43 1 2.1270 -1.8044 1.1644 44 1 1.4569 -0.8565 3.4196 45 1 1.0068 0.7408 2.6145 46 1 3.3909 0.9970 1.7892 47 1 3.8416 -0.5999 2.5944 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178121143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -40.597280 kcal Electronic energy + Delta-G solvation = -20839.880998 eV Core-core repulsion = 17636.286452 eV Total energy + Delta-G solvation = -3203.594545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35538 -37.81604 -36.73629 -35.37957 -34.01835 -32.77531 -31.64104 -29.86395 -27.01282 -25.49375 -24.06271 -22.69065 -22.40240 -21.64039 -21.02976 -20.64643 -19.87127 -17.70234 -16.96173 -16.45709 -16.24737 -15.52565 -15.35968 -14.84026 -14.63054 -14.33941 -13.99578 -13.50358 -13.44562 -13.37047 -12.96584 -12.71758 -12.68791 -12.40832 -12.33708 -11.87353 -11.69622 -11.43515 -11.33389 -11.17624 -10.90337 -10.77670 -10.71695 -10.71081 -10.45605 -10.42470 -10.24951 -10.05149 -9.91227 -9.62084 -9.35984 -8.82852 -6.87600 -5.72663 -3.01171 2.35660 2.81047 3.41327 3.46300 3.50075 3.51687 4.12586 4.24809 4.45142 4.54757 4.62352 4.65290 4.75482 4.76816 4.92392 4.94292 4.99869 5.18545 5.23976 5.24532 5.35110 5.40261 5.42394 5.50209 5.57071 5.63982 5.65221 5.70129 5.70797 5.75611 5.89006 5.95504 5.97143 6.14396 6.15123 6.34939 6.35588 6.43008 6.49887 6.93126 6.97194 7.17713 7.72508 7.93085 8.46695 9.57183 10.16988 10.51501 11.50365 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.068209 B = 0.001677 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.404899 B =16689.665229 C =16911.483217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.096 0.904 4 C 0.517 3.483 5 O -0.537 6.537 6 N -0.731 5.731 7 C 0.117 3.883 8 C -0.130 4.130 9 C -0.116 4.116 10 C -0.113 4.113 11 C -0.127 4.127 12 C 0.152 3.848 13 N -0.735 5.735 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.016 4.016 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.136 4.136 23 C -0.178 4.178 24 C -0.178 4.178 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.400 0.600 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 6.622 32.363 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.114 0.886 4 C 0.303 3.697 5 O -0.413 6.413 6 N -0.383 5.383 7 C -0.007 4.007 8 C -0.168 4.168 9 C -0.154 4.154 10 C -0.151 4.151 11 C -0.165 4.165 12 C 0.025 3.975 13 N -0.379 5.379 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.155 4.155 23 C -0.215 4.215 24 C -0.215 4.215 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.134 0.866 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.468 5.989 32.289 33.143 hybrid contribution -0.261 0.473 -1.067 1.196 sum -4.728 6.463 31.223 32.233 Atomic orbital electron populations 1.21760 0.92461 1.03080 1.02647 1.20868 0.97466 0.99951 0.91909 0.88568 1.20548 0.80008 0.84606 0.84535 1.90705 1.37553 1.26280 1.86746 1.46071 1.54037 1.32330 1.05864 1.21449 0.99542 0.96549 0.83132 1.21825 1.01354 1.00004 0.93639 1.21520 1.01149 0.99654 0.93126 1.21497 1.00617 0.99366 0.93631 1.21730 1.00877 0.99760 0.94102 1.20655 0.96077 0.94663 0.86152 1.42388 1.61407 1.33522 1.00597 1.19218 1.25605 1.08626 0.83708 0.91272 1.24752 1.00555 0.97975 0.97847 1.69655 1.39328 1.20934 1.28433 0.86251 0.77829 0.77840 0.84174 1.21291 1.21663 1.21284 1.22048 1.03572 1.00176 0.89657 1.22979 0.98192 1.03234 0.97103 1.23017 0.92618 1.01857 1.03976 0.91804 0.91237 0.92028 0.76609 0.91400 0.91397 0.91306 0.91316 0.91639 0.91628 0.92112 0.92118 0.92086 0.92092 0.96602 0.96610 0.78331 0.93496 0.86591 0.88652 0.88734 0.88880 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.93 37.16 0.33 -0.33 16 2 C -0.08 -0.52 2.88 -91.77 -0.26 -0.78 16 3 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 4 C 0.52 4.93 7.15 -10.99 -0.08 4.85 16 5 O -0.54 -7.44 15.65 5.56 0.09 -7.35 16 6 N -0.73 -5.56 5.45 -60.30 -0.33 -5.89 16 7 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 8 C -0.13 -1.03 5.33 -26.73 -0.14 -1.17 16 9 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 10 C -0.11 -1.39 5.21 -26.74 -0.14 -1.53 16 11 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 12 C 0.15 3.17 6.26 -4.04 -0.03 3.15 16 13 N -0.74 -19.49 5.60 -59.91 -0.34 -19.82 16 14 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 18 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C -0.14 -1.00 4.76 -90.62 -0.43 -1.43 16 23 C -0.18 -0.96 9.74 -26.73 -0.26 -1.22 16 24 C -0.18 -1.14 10.18 -26.73 -0.27 -1.41 16 25 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.07 0.25 7.29 -51.93 -0.38 -0.13 16 27 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 28 H 0.40 1.93 7.89 -40.82 -0.32 1.61 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.12 1.08 7.47 -51.93 -0.39 0.69 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.40 7.61 -51.93 -0.40 0.01 16 46 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -33.93 382.48 -9.85 -43.78 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.90 Total: 4.07 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.83 Total: -10.09 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.06 Total: -53.95 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.93 -9.85 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178121143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.179 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds