Wall clock time and date at job start Tue Mar 31 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47304 * 2 1 4 4 C 1.53004 * 109.47043 * 119.99496 * 2 1 3 5 5 C 1.53002 * 109.46978 * 292.79141 * 4 2 1 6 6 C 1.53001 * 109.47478 * 62.86214 * 5 4 2 7 7 C 1.52998 * 109.47122 * 182.86220 * 5 4 2 8 8 C 1.53001 * 109.46985 * 302.86530 * 5 4 2 9 9 C 1.50701 * 109.47427 * 239.99245 * 2 1 3 10 10 O 1.21281 * 119.99921 * 253.28665 * 9 2 1 11 11 N 1.34781 * 119.99576 * 73.28206 * 9 2 1 12 12 C 1.47017 * 125.64953 * 356.00977 * 11 9 2 13 13 C 1.54323 * 107.26946 * 181.02053 * 12 11 9 14 14 C 1.55153 * 102.94277 * 22.19075 * 13 12 11 15 15 H 1.08998 * 111.00702 * 82.60828 * 14 13 12 16 16 N 1.46499 * 111.00409 * 206.42586 * 14 13 12 17 17 C 1.36944 * 119.99895 * 273.54495 * 16 14 13 18 18 H 1.08001 * 119.99909 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00056 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00079 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47174 * 60.00277 * 21 19 17 23 23 H 1.48502 * 109.47308 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47574 * 300.00123 * 21 19 17 25 25 C 1.47423 * 125.64272 * 175.69572 * 11 9 2 26 26 H 1.08992 * 109.47306 * 211.05598 * 1 2 3 27 27 H 1.09004 * 109.47141 * 331.06158 * 1 2 3 28 28 H 1.09004 * 109.46658 * 91.05413 * 1 2 3 29 29 H 1.09002 * 109.46868 * 52.78338 * 4 2 1 30 30 H 1.08999 * 109.47228 * 172.79209 * 4 2 1 31 31 H 1.09008 * 109.46908 * 36.86953 * 6 5 4 32 32 H 1.08996 * 109.47128 * 156.86999 * 6 5 4 33 33 H 1.09003 * 109.47186 * 276.87673 * 6 5 4 34 34 H 1.08999 * 109.46976 * 60.00295 * 7 5 4 35 35 H 1.09001 * 109.47328 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47399 * 299.99990 * 7 5 4 37 37 H 1.08993 * 109.47537 * 60.00267 * 8 5 4 38 38 H 1.09001 * 109.47203 * 180.02562 * 8 5 4 39 39 H 1.09005 * 109.46841 * 299.99659 * 8 5 4 40 40 H 1.09004 * 109.88277 * 300.43440 * 12 11 9 41 41 H 1.08994 * 109.88919 * 61.60097 * 12 11 9 42 42 H 1.09000 * 110.71952 * 140.55369 * 13 12 11 43 43 H 1.08997 * 110.72315 * 263.64872 * 13 12 11 44 44 H 0.96995 * 120.00284 * 93.54637 * 16 14 13 45 45 H 0.96999 * 120.00417 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36844 * 274.74543 * 25 11 9 47 47 H 1.08996 * 110.37019 * 37.06973 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6831 0.0971 2.4919 6 6 0.1615 0.1954 2.6183 7 6 2.2549 -0.5875 3.7350 8 6 2.2760 1.5019 2.3650 9 6 2.0324 -0.7106 -1.2304 10 8 2.5194 -1.8172 -1.1351 11 7 1.9405 -0.1162 -2.4365 12 6 1.3013 1.1800 -2.7065 13 6 1.4150 1.4397 -4.2235 14 6 1.6104 0.0151 -4.8063 15 1 0.6535 -0.4934 -4.9243 16 7 2.3368 0.0629 -6.0776 17 6 1.6546 0.2559 -7.2492 18 1 0.5810 0.3724 -7.2360 19 6 2.3428 0.3006 -8.4538 20 7 3.6512 0.1581 -8.4700 21 14 1.4121 0.5632 -10.0520 22 1 0.6956 1.8628 -9.9998 23 1 2.3697 0.5706 -11.1870 24 1 0.4311 -0.5357 -10.2399 25 6 2.4700 -0.6551 -3.7024 26 1 -0.3633 -0.8803 0.5301 27 1 -0.3634 0.8994 0.4973 28 1 -0.3633 -0.0189 -1.0276 29 1 1.5750 -1.7048 1.3163 30 1 3.1223 -0.8342 1.1873 31 1 -0.2908 -0.7447 2.3021 32 1 -0.1047 0.3958 3.6561 33 1 -0.2040 1.0050 1.9865 34 1 3.3389 -0.6574 3.6450 35 1 2.0011 -0.0043 4.6202 36 1 1.8325 -1.5882 3.8253 37 1 1.8687 1.9896 1.4796 38 1 2.0222 2.0847 3.2505 39 1 3.3601 1.4319 2.2751 40 1 0.2518 1.1438 -2.4143 41 1 1.8145 1.9683 -2.1560 42 1 0.5001 1.8911 -4.6071 43 1 2.2762 2.0706 -4.4433 44 1 3.3010 -0.0422 -6.0895 45 1 4.1321 0.1897 -9.3118 46 1 3.5196 -0.3856 -3.8199 47 1 2.3497 -1.7379 -3.7336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186111992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:19 Heat of formation + Delta-G solvation = -35.159777 kcal Electronic energy + Delta-G solvation = -23094.578059 eV Core-core repulsion = 19891.219301 eV Total energy + Delta-G solvation = -3203.358757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28597 -38.43025 -37.05928 -34.18258 -33.00543 -31.33818 -29.52340 -28.35415 -27.81764 -27.54168 -26.34221 -24.27471 -23.12742 -21.92134 -20.10700 -19.10753 -18.63390 -17.32088 -17.05475 -15.90412 -15.64831 -15.20810 -14.63476 -14.41035 -14.19951 -14.02421 -13.74686 -13.44685 -13.25998 -13.06057 -12.79398 -12.66730 -12.26836 -12.17947 -12.10474 -11.92597 -11.74434 -11.56013 -11.24034 -11.16222 -10.94972 -10.84503 -10.75289 -10.68522 -10.67925 -10.52113 -10.29955 -10.07711 -9.77240 -9.44478 -8.96579 -8.37062 -7.05927 -5.83244 -3.13961 2.82369 3.17856 3.40584 3.45446 3.46328 4.40795 4.47619 4.53807 4.61252 4.71252 4.95720 5.03611 5.06776 5.14132 5.28673 5.32688 5.33307 5.37778 5.43731 5.49176 5.55954 5.58074 5.58658 5.68479 5.71117 5.75535 5.77959 5.79443 5.83873 5.97760 6.04008 6.06203 6.14301 6.16702 6.21611 6.25679 6.26889 6.38092 6.56786 6.62446 6.91094 7.63656 7.77952 8.33851 8.37414 9.45659 9.99892 10.34853 11.38945 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043363 B = 0.003036 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.550889 B = 9221.515500 C = 9414.683416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.088 4.088 5 C -0.070 4.070 6 C -0.154 4.154 7 C -0.140 4.140 8 C -0.146 4.146 9 C 0.528 3.472 10 O -0.548 6.548 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.155 4.155 14 C 0.172 3.828 15 H 0.063 0.937 16 N -0.715 5.715 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.098 3.902 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.067 0.933 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 3.484 22.751 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 H 0.113 0.887 4 C -0.126 4.126 5 C -0.070 4.070 6 C -0.211 4.211 7 C -0.197 4.197 8 C -0.203 4.203 9 C 0.317 3.683 10 O -0.425 6.425 11 N -0.347 5.347 12 C -0.023 4.023 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.080 0.920 16 N -0.356 5.356 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.025 4.025 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.990 2.863 22.697 23.648 hybrid contribution -0.080 0.292 -0.997 1.042 sum -6.070 3.155 21.700 22.752 Atomic orbital electron populations 1.22318 0.93100 1.03085 1.02501 1.21350 0.97677 1.00903 0.92905 0.88653 1.21532 1.01541 0.98317 0.91208 1.20554 0.95796 0.95534 0.95103 1.22435 0.94860 1.02413 1.01344 1.21869 1.00847 1.00353 0.96657 1.21994 1.00877 0.95792 1.01603 1.20362 0.78648 0.85823 0.83469 1.90680 1.46118 1.19846 1.85893 1.48470 1.57046 1.21790 1.07427 1.22147 0.97054 0.84681 0.98386 1.23416 1.02893 1.01797 0.91559 1.21333 0.94799 0.92112 0.85725 0.91953 1.42254 1.06804 1.86368 1.00148 1.19162 0.91637 1.42276 0.84498 0.91047 1.24772 0.95628 1.02430 0.97820 1.69651 1.05823 1.56411 1.25932 0.86241 0.78534 0.78012 0.83205 1.21179 1.21646 1.21175 1.22560 0.98236 0.99334 0.82370 0.91395 0.90740 0.92386 0.91068 0.91473 0.92109 0.93334 0.91408 0.92697 0.92784 0.92641 0.92269 0.92783 0.92656 0.91696 0.92187 0.90791 0.90584 0.77945 0.93290 0.91428 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.55 37.16 0.28 -1.12 16 2 C -0.11 -1.17 1.87 -91.77 -0.17 -1.34 16 3 H 0.10 0.93 5.71 -51.93 -0.30 0.64 16 4 C -0.09 -0.93 3.10 -26.73 -0.08 -1.01 16 5 C -0.07 -0.56 0.80 -154.51 -0.12 -0.69 16 6 C -0.15 -1.10 7.23 37.16 0.27 -0.83 16 7 C -0.14 -1.07 8.36 37.16 0.31 -0.75 16 8 C -0.15 -1.10 7.95 37.16 0.30 -0.80 16 9 C 0.53 8.17 6.90 -10.98 -0.08 8.09 16 10 O -0.55 -10.51 16.30 5.56 0.09 -10.42 16 11 N -0.61 -9.50 3.31 -170.39 -0.56 -10.06 16 12 C 0.10 1.31 6.06 -3.07 -0.02 1.29 16 13 C -0.16 -2.51 6.64 -24.90 -0.17 -2.67 16 14 C 0.17 3.33 3.70 -65.66 -0.24 3.09 16 15 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 16 N -0.72 -17.44 5.28 -51.24 -0.27 -17.71 16 17 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 21 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.10 1.77 6.55 -2.41 -0.02 1.76 16 26 H 0.07 0.61 5.96 -51.93 -0.31 0.30 16 27 H 0.07 0.53 5.60 -51.93 -0.29 0.24 16 28 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 29 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 30 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.06 0.45 6.22 -51.92 -0.32 0.13 16 32 H 0.05 0.32 7.92 -51.93 -0.41 -0.09 16 33 H 0.07 0.45 5.17 -51.93 -0.27 0.18 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 6.20 -51.93 -0.32 0.11 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.73 6.42 -51.93 -0.33 0.40 16 41 H 0.06 0.68 8.01 -51.93 -0.42 0.26 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.39 10.06 7.71 -40.82 -0.31 9.75 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 1.26 8.00 -51.93 -0.42 0.85 16 47 H 0.08 1.45 8.00 -51.93 -0.42 1.03 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -30.81 355.12 -7.86 -38.67 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.18 Total: 6.30 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 0.01 Total: -2.12 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.11 Total: -54.69 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.81 -7.86 -38.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186111992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.510 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds