Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47300 * 2 1 4 4 C 1.53005 * 109.47453 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47060 * 68.28892 * 4 2 1 6 6 C 1.52998 * 109.47033 * 53.65705 * 5 4 2 7 7 C 1.53000 * 109.46976 * 173.65664 * 5 4 2 8 8 C 1.52998 * 109.47042 * 293.65572 * 5 4 2 9 9 C 1.50698 * 109.47403 * 120.00128 * 2 1 3 10 10 O 1.21277 * 120.00188 * 109.62178 * 9 2 1 11 11 N 1.34776 * 119.99766 * 289.62416 * 9 2 1 12 12 C 1.47013 * 125.65071 * 356.25730 * 11 9 2 13 13 C 1.54319 * 107.27568 * 181.09522 * 12 11 9 14 14 C 1.55157 * 102.94357 * 22.19028 * 13 12 11 15 15 H 1.09006 * 111.03629 * 82.58263 * 14 13 12 16 16 N 1.46502 * 111.00908 * 206.42674 * 14 13 12 17 17 C 1.36934 * 119.99934 * 267.19320 * 16 14 13 18 18 H 1.08000 * 120.00116 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99895 * 179.97438 * 17 16 14 20 20 N 1.31610 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47084 * 180.02562 * 21 19 17 23 23 H 1.48496 * 109.47210 * 300.00464 * 21 19 17 24 24 H 1.48503 * 109.46946 * 60.00023 * 21 19 17 25 25 C 1.47428 * 125.64667 * 176.29492 * 11 9 2 26 26 H 1.08999 * 109.47484 * 268.15024 * 1 2 3 27 27 H 1.08996 * 109.47337 * 28.15162 * 1 2 3 28 28 H 1.09001 * 109.47008 * 148.14967 * 1 2 3 29 29 H 1.08994 * 109.47138 * 188.29354 * 4 2 1 30 30 H 1.09006 * 109.46832 * 308.29418 * 4 2 1 31 31 H 1.09004 * 109.46832 * 59.99923 * 6 5 4 32 32 H 1.08998 * 109.47132 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47267 * 300.00328 * 6 5 4 34 34 H 1.09004 * 109.46817 * 60.00136 * 7 5 4 35 35 H 1.09002 * 109.47273 * 179.97438 * 7 5 4 36 36 H 1.08995 * 109.47275 * 300.00164 * 7 5 4 37 37 H 1.09003 * 109.47079 * 84.29647 * 8 5 4 38 38 H 1.09001 * 109.47020 * 204.29306 * 8 5 4 39 39 H 1.08997 * 109.47408 * 324.30001 * 8 5 4 40 40 H 1.09002 * 109.88443 * 300.51150 * 12 11 9 41 41 H 1.09001 * 109.88393 * 61.51861 * 12 11 9 42 42 H 1.09002 * 110.72058 * 263.83136 * 13 12 11 43 43 H 1.09001 * 110.72525 * 140.55273 * 13 12 11 44 44 H 0.96996 * 119.99900 * 87.19593 * 16 14 13 45 45 H 0.96998 * 120.00184 * 0.02562 * 20 19 17 46 46 H 1.09002 * 110.36544 * 36.99966 * 25 11 9 47 47 H 1.08995 * 110.46498 * 274.72157 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.7069 0.1101 -2.4898 6 6 2.2456 1.5310 -2.3113 7 6 2.3528 -0.5292 -3.7207 8 6 0.1894 0.1598 -2.6780 9 6 2.0323 -0.7104 1.2304 10 8 2.5670 -1.7942 1.1290 11 7 1.8874 -0.1413 2.4435 12 6 1.3316 1.1949 2.7022 13 6 1.3886 1.4277 4.2266 14 6 2.4931 0.4404 4.6879 15 1 3.4853 0.8684 4.5445 16 7 2.2924 0.0425 6.0835 17 6 2.9127 0.7351 7.0888 18 1 3.5495 1.5749 6.8529 19 6 2.7222 0.3585 8.4112 20 7 1.9457 -0.6646 8.6987 21 14 3.5678 1.3037 9.7827 22 1 3.2046 0.7062 11.0927 23 1 5.0396 1.2333 9.5980 24 1 3.1320 2.7229 9.7475 25 6 2.2607 -0.7554 3.7308 26 1 -0.3634 -0.0332 1.0271 27 1 -0.3634 0.9060 -0.4848 28 1 -0.3633 -0.8729 -0.5423 29 1 3.1198 -0.8513 -1.1782 30 1 1.5607 -1.6972 -1.3265 31 1 3.3267 1.4955 -2.1772 32 1 2.0079 2.1233 -3.1948 33 1 1.7855 1.9864 -1.4344 34 1 1.9690 -1.5415 -3.8478 35 1 2.1152 0.0627 -4.6045 36 1 3.4339 -0.5647 -3.5866 37 1 -0.2271 0.9572 -2.0625 38 1 -0.0406 0.3521 -3.7260 39 1 -0.2452 -0.7942 -2.3796 40 1 1.9275 1.9500 2.1894 41 1 0.2989 1.2402 2.3563 42 1 0.4333 1.1817 4.6904 43 1 1.6732 2.4561 4.4494 44 1 1.7202 -0.7115 6.2954 45 1 1.5069 -1.1556 7.9866 46 1 3.1757 -1.3377 3.6221 47 1 1.4523 -1.3859 4.1008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186111994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -37.876157 kcal Electronic energy + Delta-G solvation = -23129.127550 eV Core-core repulsion = 19925.651001 eV Total energy + Delta-G solvation = -3203.476549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.33317 -38.47121 -37.13815 -34.47215 -33.09406 -31.37024 -29.49504 -28.26874 -27.70421 -27.57833 -26.42233 -24.18060 -23.16332 -21.99155 -20.27987 -19.14632 -18.64408 -17.54892 -17.18145 -16.03056 -15.44471 -15.28885 -14.88546 -14.42018 -14.23760 -14.08053 -13.83219 -13.63604 -13.31366 -13.06889 -12.76960 -12.58452 -12.52347 -12.22472 -12.15711 -12.02772 -11.76867 -11.66888 -11.28618 -11.09639 -11.05213 -10.77845 -10.73438 -10.72550 -10.66118 -10.52597 -10.27882 -10.02132 -9.53444 -9.24990 -8.99183 -8.43988 -7.14764 -6.17306 -3.19265 2.76984 3.11878 3.48762 3.51991 3.69645 4.37279 4.43789 4.58557 4.61679 4.68528 4.91135 4.97454 5.00413 5.09611 5.25287 5.27697 5.31003 5.35450 5.38476 5.46000 5.49616 5.55505 5.55823 5.65276 5.67222 5.69806 5.71775 5.76603 5.80449 5.89907 5.96097 6.01349 6.03735 6.11798 6.16846 6.18610 6.22973 6.28383 6.48610 6.54692 6.79643 7.71729 7.73267 8.31484 8.67861 9.12218 9.98763 10.12293 11.30596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041585 B = 0.003038 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.152248 B = 9214.147172 C = 9312.561590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.088 4.088 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.151 4.151 9 C 0.528 3.472 10 O -0.547 6.547 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.155 4.155 14 C 0.177 3.823 15 H 0.067 0.933 16 N -0.725 5.725 17 C -0.337 4.337 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.940 5.940 21 Si 1.081 2.919 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.096 3.904 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.369 0.631 45 H 0.256 0.744 46 H 0.075 0.925 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 5.155 -23.323 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 H 0.115 0.885 4 C -0.126 4.126 5 C -0.070 4.070 6 C -0.203 4.203 7 C -0.197 4.197 8 C -0.208 4.208 9 C 0.317 3.683 10 O -0.425 6.425 11 N -0.347 5.347 12 C -0.022 4.022 13 C -0.196 4.196 14 C 0.065 3.935 15 H 0.085 0.915 16 N -0.367 5.367 17 C -0.467 4.467 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.585 5.585 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.028 4.028 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.203 0.797 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.861 4.805 -21.789 22.495 hybrid contribution -0.421 -0.174 -1.592 1.656 sum -3.281 4.631 -23.381 24.060 Atomic orbital electron populations 1.22214 0.93048 1.02984 1.02478 1.21374 0.97645 1.01033 0.92880 0.88489 1.21544 1.01714 0.98151 0.91196 1.20555 0.95789 0.95538 0.95117 1.22009 1.01096 0.95639 1.01579 1.21873 1.00572 1.00539 0.96742 1.22341 0.94877 1.02309 1.01294 1.20387 0.78742 0.85728 0.83449 1.90680 1.43971 1.21792 1.86031 1.48451 1.62248 1.18016 1.06000 1.22132 0.98000 0.83783 0.98324 1.23400 1.02389 1.02078 0.91772 1.21229 0.96285 0.91249 0.84712 0.91471 1.42269 1.57417 1.37225 0.99739 1.20026 1.26103 1.12271 0.88338 0.91549 1.25820 1.00699 0.99830 0.97608 1.70883 1.32290 1.20638 1.34675 0.83234 0.75071 0.74580 0.75990 1.20977 1.22170 1.22174 1.22578 1.00564 0.97115 0.82526 0.92385 0.90973 0.91442 0.91352 0.91139 0.92618 0.92751 0.92224 0.92648 0.92759 0.92671 0.91642 0.93226 0.92245 0.91961 0.91805 0.90803 0.90649 0.79704 0.93295 0.90646 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.54 37.15 0.28 -1.11 16 2 C -0.11 -1.18 1.81 -91.77 -0.17 -1.35 16 3 H 0.10 0.94 5.61 -51.93 -0.29 0.65 16 4 C -0.09 -0.93 3.15 -26.73 -0.08 -1.01 16 5 C -0.07 -0.56 0.80 -154.51 -0.12 -0.69 16 6 C -0.15 -1.09 7.84 37.16 0.29 -0.80 16 7 C -0.14 -1.06 8.35 37.16 0.31 -0.75 16 8 C -0.15 -1.08 7.31 37.16 0.27 -0.81 16 9 C 0.53 8.17 6.93 -10.99 -0.08 8.09 16 10 O -0.55 -10.51 16.23 5.56 0.09 -10.42 16 11 N -0.61 -9.50 3.26 -170.53 -0.56 -10.05 16 12 C 0.10 1.32 6.07 -3.07 -0.02 1.30 16 13 C -0.16 -2.51 6.65 -24.90 -0.17 -2.68 16 14 C 0.18 3.47 3.71 -65.78 -0.24 3.22 16 15 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 16 N -0.73 -17.71 5.24 -51.35 -0.27 -17.98 16 17 C -0.34 -9.23 9.96 -15.06 -0.15 -9.38 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.04 -1.19 5.50 -17.43 -0.10 -1.28 16 20 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 21 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.10 1.73 6.57 -2.52 -0.02 1.72 16 26 H 0.06 0.60 6.15 -51.93 -0.32 0.28 16 27 H 0.07 0.52 5.87 -51.93 -0.30 0.21 16 28 H 0.07 0.61 6.01 -51.93 -0.31 0.30 16 29 H 0.07 0.82 8.00 -51.93 -0.42 0.40 16 30 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.43 6.13 -51.93 -0.32 0.11 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 5.31 -51.93 -0.28 0.16 16 38 H 0.05 0.32 7.90 -51.93 -0.41 -0.09 16 39 H 0.06 0.44 6.35 -51.93 -0.33 0.11 16 40 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.37 9.34 6.59 -40.82 -0.27 9.07 16 45 H 0.26 7.68 6.77 -40.82 -0.28 7.41 16 46 H 0.08 1.46 8.00 -51.93 -0.42 1.05 16 47 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -31.94 353.77 -7.81 -39.76 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.10 Total: 6.46 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.01 Total: -5.52 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.06 Total: -55.98 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.94 -7.81 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186111994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.882 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds