Wall clock time and date at job start Tue Mar 31 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47171 * 2 1 4 4 C 1.52999 * 109.47022 * 119.99700 * 2 1 3 5 5 C 1.53003 * 109.47153 * 65.88271 * 4 2 1 6 6 H 1.09001 * 109.47506 * 305.55330 * 5 4 2 7 7 C 1.53005 * 109.46830 * 65.54900 * 5 4 2 8 8 C 1.52997 * 109.47454 * 185.54931 * 5 4 2 9 9 C 1.50698 * 109.47482 * 174.99864 * 8 5 4 10 10 O 1.21284 * 119.99593 * 0.27690 * 9 8 5 11 11 N 1.34775 * 120.00404 * 180.02562 * 9 8 5 12 12 C 1.47430 * 125.64310 * 359.69384 * 11 9 8 13 13 C 1.55131 * 104.71879 * 155.81947 * 12 11 9 14 14 C 1.55158 * 101.48749 * 37.29140 * 13 12 11 15 15 H 1.09006 * 110.71864 * 82.69646 * 14 13 12 16 16 N 1.46498 * 110.72156 * 205.96869 * 14 13 12 17 17 C 1.36942 * 120.00041 * 268.52835 * 16 14 13 18 18 H 1.07996 * 119.99863 * 359.97438 * 17 16 14 19 19 C 1.38809 * 119.99797 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00417 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47031 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.47257 * 119.99340 * 21 19 17 24 24 H 1.48493 * 109.47181 * 239.99522 * 21 19 17 25 25 C 1.47016 * 125.65093 * 180.02562 * 11 9 8 26 26 H 1.08999 * 109.46833 * 300.00314 * 1 2 3 27 27 H 1.09005 * 109.46596 * 60.00313 * 1 2 3 28 28 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46833 * 239.99686 * 2 1 3 30 30 H 1.08988 * 109.47419 * 65.09967 * 3 2 1 31 31 H 1.09002 * 109.47209 * 185.10358 * 3 2 1 32 32 H 1.09004 * 109.47247 * 305.09632 * 3 2 1 33 33 H 1.08997 * 109.47172 * 305.88274 * 4 2 1 34 34 H 1.08999 * 109.47164 * 185.87824 * 4 2 1 35 35 H 1.09004 * 109.46884 * 177.72210 * 7 5 4 36 36 H 1.09000 * 109.47362 * 297.71910 * 7 5 4 37 37 H 1.09001 * 109.47278 * 57.73194 * 7 5 4 38 38 H 1.09000 * 109.46959 * 55.00022 * 8 5 4 39 39 H 1.08997 * 109.47062 * 295.00178 * 8 5 4 40 40 H 1.09004 * 110.36237 * 274.74626 * 12 11 9 41 41 H 1.08994 * 110.36623 * 37.06960 * 12 11 9 42 42 H 1.09004 * 111.19035 * 279.18868 * 13 12 11 43 43 H 1.08997 * 110.94014 * 155.28793 * 13 12 11 44 44 H 0.96996 * 119.99837 * 88.51934 * 16 14 13 45 45 H 0.96995 * 120.00336 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.88369 * 300.43641 * 25 11 9 47 47 H 1.09001 * 109.88393 * 61.44609 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6543 -2.2001 1.1776 6 1 0.5787 -2.2881 1.0243 7 6 2.3915 -2.8635 0.0125 8 6 2.0412 -2.8921 2.4861 9 6 1.5519 -4.3172 2.4646 10 8 0.9570 -4.7395 1.4956 11 7 1.7796 -5.1241 3.5198 12 6 2.4966 -4.7461 4.7514 13 6 1.9656 -5.7238 5.8324 14 6 1.8145 -7.0346 5.0161 15 1 2.7694 -7.5552 4.9423 16 7 0.7947 -7.9015 5.6116 17 6 1.1529 -8.8418 6.5406 18 1 2.1872 -8.9445 6.8338 19 6 0.1866 -9.6635 7.1044 20 7 -1.0739 -9.5387 6.7466 21 14 0.6752 -10.9466 8.3710 22 1 2.1416 -10.8852 8.5976 23 1 -0.0349 -10.6779 9.6473 24 1 0.3076 -12.2970 7.8749 25 6 1.3604 -6.5288 3.6307 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.7533 1.9292 0.9320 31 1 3.1262 1.4438 -0.0914 32 1 1.6041 1.9820 -0.8408 33 1 1.5933 -0.2717 2.1361 34 1 3.1249 -0.6309 1.3035 35 1 2.1480 -3.9256 -0.0138 36 1 2.0851 -2.3972 -0.9239 37 1 3.4663 -2.7404 0.1453 38 1 1.5864 -2.3644 3.3245 39 1 3.1256 -2.8819 2.5957 40 1 3.5712 -4.8712 4.6182 41 1 2.2646 -3.7167 5.0246 42 1 1.0031 -5.3939 6.2234 43 1 2.6907 -5.8460 6.6370 44 1 -0.1342 -7.8094 5.3480 45 1 -1.7491 -10.1126 7.1409 46 1 0.2758 -6.5997 3.5477 47 1 1.8315 -7.1194 2.8449 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187004651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:23 Heat of formation + Delta-G solvation = -52.255812 kcal Electronic energy + Delta-G solvation = -22489.169636 eV Core-core repulsion = 19285.069539 eV Total energy + Delta-G solvation = -3204.100097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97789 -38.06249 -36.98296 -34.12938 -33.62897 -31.55415 -29.54681 -28.73142 -27.40275 -26.99200 -26.70458 -23.73408 -22.78353 -21.35179 -20.04850 -19.58753 -18.84764 -17.42513 -16.90531 -16.16345 -15.58318 -15.12873 -15.02183 -14.49414 -14.10304 -13.98549 -13.65806 -13.45819 -13.20737 -12.93462 -12.85868 -12.53856 -12.41612 -12.05723 -11.94398 -11.79383 -11.68703 -11.50391 -11.40227 -11.20523 -11.09562 -10.87106 -10.76463 -10.70216 -10.53890 -10.46126 -10.31400 -10.07599 -9.78841 -9.46921 -8.99205 -8.35578 -7.06279 -5.83843 -3.14600 2.84230 3.20510 3.39485 3.45147 3.47484 4.45433 4.53174 4.57002 4.65670 4.78261 4.92426 5.02914 5.04670 5.22694 5.30296 5.37703 5.38619 5.42105 5.44109 5.48823 5.55582 5.60173 5.60475 5.62207 5.70020 5.74372 5.77031 5.87544 5.90425 5.96156 6.03476 6.05196 6.13115 6.18284 6.26708 6.35476 6.37934 6.45222 6.58736 6.62518 6.88762 7.63878 7.78993 8.33227 8.39855 9.44977 9.99447 10.34051 11.38404 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.002682 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.077242 B =10435.573975 C =10556.942475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.078 4.078 6 H 0.081 0.919 7 C -0.153 4.153 8 C -0.132 4.132 9 C 0.523 3.477 10 O -0.544 6.544 11 N -0.615 5.615 12 C 0.099 3.901 13 C -0.155 4.155 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.716 5.716 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.099 3.901 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 20.077 -10.182 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.096 4.096 6 H 0.099 0.901 7 C -0.210 4.210 8 C -0.172 4.172 9 C 0.312 3.688 10 O -0.422 6.422 11 N -0.349 5.349 12 C -0.025 4.025 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.356 5.356 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.024 4.024 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.183 19.745 -10.640 23.875 hybrid contribution -0.075 -0.652 0.818 1.048 sum 8.108 19.093 -9.822 22.951 Atomic orbital electron populations 1.21911 0.95305 1.02180 1.01409 1.21155 0.95975 0.95810 0.98791 1.21846 1.00754 0.96238 1.01606 1.21716 1.00757 0.94534 0.97734 1.20955 1.01664 0.93453 0.93566 0.90077 1.21988 0.99002 1.02674 0.97348 1.21723 1.02594 0.92743 1.00114 1.20338 0.79565 0.87445 0.81425 1.90657 1.42202 1.76454 1.32865 1.48558 1.56176 1.12994 1.17163 1.22429 0.96029 0.99351 0.84670 1.23607 1.01706 0.97179 0.97163 1.21183 0.93857 0.90159 0.88830 0.91595 1.42380 1.05579 1.39508 1.48110 1.19270 0.93556 1.09942 1.14784 0.90891 1.24787 0.95386 1.00005 1.00578 1.69675 0.99926 1.41788 1.46337 0.86096 0.77538 0.81379 0.81001 1.20476 1.21804 1.21790 1.22324 1.00599 0.80415 0.99081 0.92828 0.93042 0.92092 0.90889 0.92809 0.92883 0.92899 0.91992 0.91989 0.90660 0.92892 0.93584 0.89228 0.89257 0.91687 0.91366 0.90670 0.90594 0.77944 0.93387 0.91261 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.97 37.16 0.33 -0.89 16 2 C -0.10 -0.77 2.80 -90.62 -0.25 -1.03 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.11 -0.89 4.13 -26.73 -0.11 -1.00 16 5 C -0.08 -0.80 1.92 -90.62 -0.17 -0.98 16 6 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 7 C -0.15 -1.67 8.68 37.16 0.32 -1.35 16 8 C -0.13 -1.41 4.18 -27.89 -0.12 -1.53 16 9 C 0.52 7.94 7.55 -10.99 -0.08 7.85 16 10 O -0.54 -10.08 14.29 5.55 0.08 -10.00 16 11 N -0.61 -9.45 3.32 -170.38 -0.57 -10.02 16 12 C 0.10 1.25 6.70 -2.41 -0.02 1.24 16 13 C -0.16 -2.48 6.78 -24.46 -0.17 -2.65 16 14 C 0.17 3.27 3.61 -66.10 -0.24 3.04 16 15 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 16 N -0.72 -17.46 5.22 -51.65 -0.27 -17.73 16 17 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 C 0.10 1.79 6.62 -3.07 -0.02 1.77 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.56 6.48 -51.93 -0.34 0.22 16 29 H 0.07 0.60 6.38 -51.93 -0.33 0.26 16 30 H 0.05 0.35 8.14 -51.94 -0.42 -0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.04 5.90 -51.93 -0.31 0.73 16 36 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.39 10.18 7.56 -40.82 -0.31 9.87 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.38 7.72 -51.93 -0.40 0.98 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -30.62 365.55 -8.58 -39.20 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.60 Total: 6.46 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.43 Total: -3.31 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.76 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.62 -8.58 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187004651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.056 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds