Wall clock time and date at job start Tue Mar 31 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46696 * 2 1 4 4 C 1.52996 * 109.47009 * 240.00029 * 2 1 3 5 5 C 1.50698 * 109.47578 * 64.99841 * 4 2 1 6 6 O 1.21283 * 119.99578 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00352 * 179.97438 * 5 4 2 8 8 C 1.47019 * 125.64595 * 0.05354 * 7 5 4 9 9 C 1.54330 * 107.26866 * 181.01194 * 8 7 5 10 10 C 1.55157 * 102.94049 * 22.19588 * 9 8 7 11 11 H 1.09002 * 111.00633 * 82.57450 * 10 9 8 12 12 N 1.46496 * 110.99995 * 206.41920 * 10 9 8 13 13 C 1.36939 * 120.00545 * 273.54762 * 12 10 9 14 14 H 1.07996 * 119.99415 * 359.97438 * 13 12 10 15 15 C 1.38813 * 120.00247 * 180.02562 * 13 12 10 16 16 N 1.31615 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99856 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47392 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46853 * 120.00072 * 17 15 13 20 20 H 1.48498 * 109.47285 * 239.99817 * 17 15 13 21 21 C 1.47426 * 125.65028 * 180.02562 * 7 5 4 22 22 C 1.52997 * 109.46957 * 119.99747 * 2 1 3 23 23 C 1.53007 * 109.46962 * 180.02562 * 22 2 1 24 24 C 1.52996 * 109.47491 * 299.99987 * 22 2 1 25 25 C 1.52998 * 109.47320 * 60.00174 * 22 2 1 26 26 H 1.09000 * 109.47430 * 300.00428 * 1 2 3 27 27 H 1.08995 * 109.47435 * 60.00058 * 1 2 3 28 28 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47320 * 304.99651 * 4 2 1 30 30 H 1.08998 * 109.47257 * 184.99897 * 4 2 1 31 31 H 1.09000 * 109.88042 * 61.59824 * 8 7 5 32 32 H 1.08996 * 109.88551 * 300.42965 * 8 7 5 33 33 H 1.08996 * 110.71860 * 263.82642 * 9 8 7 34 34 H 1.09002 * 110.71679 * 140.55640 * 9 8 7 35 35 H 0.97005 * 119.99908 * 93.54885 * 12 10 9 36 36 H 0.96995 * 120.00245 * 180.02562 * 16 15 13 37 37 H 1.09004 * 110.36498 * 37.07621 * 21 7 5 38 38 H 1.09000 * 110.45813 * 274.80371 * 21 7 5 39 39 H 1.08993 * 109.47087 * 59.99860 * 23 22 2 40 40 H 1.08992 * 109.46953 * 180.02562 * 23 22 2 41 41 H 1.08998 * 109.46857 * 299.99749 * 23 22 2 42 42 H 1.09004 * 109.46967 * 59.99702 * 24 22 2 43 43 H 1.09001 * 109.47516 * 180.02562 * 24 22 2 44 44 H 1.09008 * 109.47180 * 300.00033 * 24 22 2 45 45 H 1.09009 * 109.47105 * 59.99967 * 25 22 2 46 46 H 1.08995 * 109.47240 * 179.97438 * 25 22 2 47 47 H 1.09003 * 109.47202 * 299.99862 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0116 1.0873 -2.3633 7 7 1.9852 -0.3915 -3.7001 8 6 2.7440 -1.6191 -3.9806 9 6 2.9201 -1.7092 -5.5112 10 6 2.7415 -0.2374 -5.9687 11 1 3.6694 0.3229 -5.8539 12 7 2.2587 -0.1720 -7.3503 13 6 3.1503 -0.2002 -8.3893 14 1 4.2094 -0.2703 -8.1901 15 6 2.6928 -0.1377 -9.6984 16 7 1.4021 -0.0508 -9.9410 17 14 3.9091 -0.1756 -11.1156 18 1 5.2905 -0.2754 -10.5799 19 1 3.6273 -1.3508 -11.9785 20 1 3.7764 1.0687 -11.9152 21 6 1.6625 0.2674 -4.9788 22 6 2.0399 -0.7212 1.2493 23 6 3.5700 -0.7206 1.2496 24 6 1.5300 0.0000 2.4985 25 6 1.5300 -2.1637 1.2493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6053 -1.7199 -1.2951 30 1 3.1262 -0.7995 -1.2056 31 1 2.1920 -2.4867 -3.6193 32 1 3.7198 -1.5704 -3.4975 33 1 2.1523 -2.3457 -5.9509 34 1 3.9159 -2.0734 -5.7640 35 1 1.3074 -0.1086 -7.5292 36 1 1.0824 -0.0075 -10.8557 37 1 1.7218 1.3507 -4.8730 38 1 0.6692 -0.0260 -5.3186 39 1 3.9329 0.3071 1.2497 40 1 3.9333 -1.2348 2.1393 41 1 3.9336 -1.2343 0.3596 42 1 0.4399 0.0001 2.4984 43 1 1.8936 -0.5135 3.3885 44 1 1.8933 1.0278 2.4985 45 1 1.8934 -2.6776 0.3593 46 1 1.8936 -2.6776 2.1391 47 1 0.4399 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187413435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:57 Heat of formation + Delta-G solvation = -44.756340 kcal Electronic energy + Delta-G solvation = -22955.485269 eV Core-core repulsion = 19751.710374 eV Total energy + Delta-G solvation = -3203.774896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18049 -38.58469 -37.07552 -34.13905 -32.08890 -31.44822 -29.59738 -29.03593 -27.74628 -27.55023 -26.25113 -23.85031 -23.01701 -22.34441 -20.09830 -19.03791 -18.23727 -17.34879 -17.00698 -16.04676 -15.58891 -15.10845 -14.74532 -14.47955 -14.22545 -13.88440 -13.76128 -13.47482 -13.23987 -13.11376 -12.76863 -12.34321 -12.22371 -12.12881 -12.03206 -11.94824 -11.78769 -11.58050 -11.31817 -11.27929 -11.17116 -10.87858 -10.71310 -10.56631 -10.49782 -10.46771 -10.30613 -10.04691 -9.79022 -9.47819 -8.98226 -8.37142 -7.06402 -5.84057 -3.14662 2.82824 3.19100 3.39486 3.45411 3.47546 4.44081 4.52249 4.53445 4.60142 4.81830 4.96227 5.05155 5.08280 5.24744 5.31512 5.35422 5.40470 5.42540 5.44587 5.51326 5.56743 5.60181 5.61727 5.70890 5.74194 5.74355 5.76094 5.85436 5.88904 5.97640 5.99535 6.05785 6.13855 6.19635 6.24568 6.32849 6.37819 6.47422 6.57095 6.62189 6.90424 7.64252 7.78120 8.33149 8.38432 9.45046 9.99260 10.34147 11.38285 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041960 B = 0.002970 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.145557 B = 9426.922017 C = 9699.036346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.063 4.063 3 H 0.077 0.923 4 C -0.135 4.135 5 C 0.524 3.476 6 O -0.544 6.544 7 N -0.615 5.615 8 C 0.102 3.898 9 C -0.155 4.155 10 C 0.172 3.828 11 H 0.062 0.938 12 N -0.716 5.716 13 C -0.243 4.243 14 H 0.073 0.927 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.099 3.901 22 C -0.066 4.066 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -4.814 23.287 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.081 4.081 3 H 0.095 0.905 4 C -0.175 4.175 5 C 0.313 3.687 6 O -0.422 6.422 7 N -0.349 5.349 8 C -0.022 4.022 9 C -0.196 4.196 10 C 0.060 3.940 11 H 0.080 0.920 12 N -0.356 5.356 13 C -0.374 4.374 14 H 0.091 0.909 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.024 4.024 22 C -0.066 4.066 23 C -0.203 4.203 24 C -0.199 4.199 25 C -0.203 4.203 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.860 -4.227 23.281 23.734 hybrid contribution 0.379 -0.218 -0.971 1.065 sum 2.239 -4.445 22.310 22.858 Atomic orbital electron populations 1.22056 0.94829 1.01456 1.02996 1.20889 0.96472 0.99329 0.91457 0.90478 1.21848 1.02844 1.00212 0.92569 1.20356 0.79326 0.85572 0.83419 1.90655 1.40632 1.24917 1.86033 1.48522 1.55139 1.25393 1.05859 1.22084 0.95174 0.86491 0.98405 1.23413 1.02692 1.02012 0.91515 1.21288 0.94930 0.92478 0.85343 0.91989 1.42269 1.07017 1.87761 0.98548 1.19250 0.89603 1.43099 0.85472 0.90937 1.24776 0.95996 1.02536 0.97413 1.69669 1.11821 1.56889 1.19387 0.86098 0.80103 0.77235 0.82601 1.20484 1.21803 1.21777 1.22492 0.99479 0.97987 0.82463 1.20576 0.95369 0.95589 0.95088 1.21960 0.94768 1.01883 1.01677 1.21907 1.01325 1.00123 0.96544 1.21990 1.01378 0.95379 1.01573 0.92814 0.90666 0.93175 0.89042 0.88930 0.92128 0.91979 0.90562 0.90758 0.77946 0.93393 0.90673 0.91470 0.92604 0.92793 0.92355 0.92254 0.92931 0.92706 0.92462 0.92955 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.23 37.16 0.31 -1.41 16 2 C -0.06 -0.65 1.40 -90.62 -0.13 -0.77 16 3 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 4 C -0.14 -1.44 3.65 -27.89 -0.10 -1.54 16 5 C 0.52 7.85 7.57 -10.99 -0.08 7.77 16 6 O -0.54 -9.95 14.22 5.55 0.08 -9.88 16 7 N -0.61 -9.38 3.33 -170.54 -0.57 -9.95 16 8 C 0.10 1.31 6.49 -3.06 -0.02 1.29 16 9 C -0.16 -2.49 6.65 -24.89 -0.17 -2.65 16 10 C 0.17 3.30 3.68 -65.80 -0.24 3.06 16 11 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 12 N -0.72 -17.40 5.28 -51.37 -0.27 -17.67 16 13 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 14 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 17 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.10 1.77 6.53 -2.54 -0.02 1.75 16 22 C -0.07 -0.53 0.57 -154.51 -0.09 -0.62 16 23 C -0.15 -1.10 8.13 37.16 0.30 -0.80 16 24 C -0.14 -1.08 8.12 37.16 0.30 -0.78 16 25 C -0.15 -1.08 7.77 37.16 0.29 -0.79 16 26 H 0.05 0.53 6.43 -51.93 -0.33 0.20 16 27 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 28 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.09 0.87 6.71 -51.93 -0.35 0.52 16 30 H 0.09 0.86 6.18 -51.93 -0.32 0.54 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.39 10.04 7.71 -40.82 -0.31 9.72 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 38 H 0.07 1.25 7.99 -51.93 -0.42 0.83 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 42 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 45 H 0.06 0.41 6.55 -51.92 -0.34 0.07 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -30.37 357.68 -7.88 -38.24 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.31 Total: 6.42 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 0.11 Total: -2.58 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.11 Total: -54.49 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.37 -7.88 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187413435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.512 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds